Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

12113595 .. 12119840

Gene Structure 6246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGGGCGCGGCGGCGGAGGCGGAAAGGCCTACCGTCCGAGTCACCAACATCCCCTGCACCATCACCGCCAACGACCTCCTCACCTTCCTCGAGTCCACTCTCGGGCCCGACTCCATCTTCGCCATCGAAATCGCCAGCGACCACAAGAACTGGAAATCCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTATCCCACAAAGCCAGAGCTCAGTCTCTCTCCTCCACCGCCGACCTCGTCTTCAAGTCCCACAACCTCCGCCTCTTCGACACCAACGATGACATCATCCCCCGGCCGCTGGACCCCAAGCACCGGCTCGACGACACCCTTTTGCACGCCGGGTTTGTCGTCAACGACGAGACCATGAGCGTGCTGGAGTCGTGGGAGGGCGTCCGGGCTTGGGTCATGCCCGAGAGGCGGCGGGTCGAGTTTTGGGTCCGGCGGGGTGGTGACTGTTTCAAGATGGAGGTTGCGTTTGAGAATATCGTGGAGTCTGTTGGGTGCTGTTTGGGTGGGGATAAAGTTAATGCTCTGCTTTTGAAGCTCAAGTTTGGCCCAAAGATTTTTCGGAAAGTATCAGGACCTAATGTAGCTTCCAAGTTTGGTGCTGATCGGTATCACTTTTGCAAGGAAGACTTTGATTATCTGTGGGTGAGGACTACAGATTTTTCTGAGACGAAGTCGATTGGCCATTCGACTTCGTTTTGCTGGGAGATTCAGGAGGACTTTTTGGTGGCGGGTCTTTTTATGAAGTTTCCGAGCTTTAGGAAAGATGTGGTGGATCTCATGTTTGAGGATGGTGATGGGTATCTTTCGGTTTCTGAGACAGTTCCGCTTGTGAAATGTGAAGCAGATTCAGAGTTACCTTATGAGATTCTTTTCCAGCTTAATGCACTTGTTCATGCTCAGAAGATTAGCCTTGCTGCAGCGGAGTGTGATCTGATTGAGTTCTTTGGTGGTTTGAGTATGGACACTGCTAATGTGCTTCTTCAGAAGCTGCAGAAGCTCAAGACCACTTGTTATGACCCTCTATCATATGCAAAGGTGCAGTTGCAACTCTTAGAGGGGAACTCTAAGAAACGTCTCTCCCCCCATCAAAGATTAATGGAGCATAACGTTATGAGTTGTCATAGAGCCTTGATTACCCCATCAAAGATTTACTGCTTGGGTCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCTCAATATGCTTCAGATTTTATGAGGGTTACATTTGTTGAAGAGGATTGGAGCAAGCTTCCAGTAAATGCTCTCTCCACAAGTATTGAACAAGGTTTCTTTGCAAAACCTTTTAGAACTGGAATATATCAGCGGATATTGTCTATTCTTCGAGATGGAATTGTGATTGGAGATAAAAGATTTGAGTTTCTGGCTTTCTCGGCGAGTCAACTCCGATCAAATTCTGTTTGGATGTTTGCTTCAAATGACAGTGTAAAGGCAGAAGATATTAGAGAATGGATGGGTTGCTTCCACAAGATCCGCAGTGTATCTAAATGTGCAGCTAGGATGGGTCAGCTATTCAGTTCTTCAACGCAAACTCTTGTTGTCCCTCAACAGGATGTGGAGCTCATTCCTGACATTGAGACTTCTTCTGATGGTGTGAGTTACTGCTTCTCTGATGGTATTGGAAAGATTTCCTTATCTTTTGCCAGGCAAGTTGCTCAAAAGTGCGGACTGAATCACACTCCTTCGGCATTCCAAATTCGATATGGTGGATATAAAGGGGTGATAGCCATTGACCGTAATTCTTTCCGGAAGCTGTCTCTACGTAGTAGTATGCTCAAATTTGAGTCGAACAACAGAATGCTTAATGTCACTAAATGGAGTTCCTCCATGCCCTGCTTTCTGAATCGAGAAATTATAACCCTCATGTCTACGCTAGGGGTAGAGGATGAAGCATTTGAAGCATTGCAACAGGCGCAATTGGATCTGTTAGGAAGGATGCGGAAAGAAAGAAATGTAGCACTAACTGCCCTAGAGAAACTAAGCGGTGCTGATTCCAATAACATTCTTGTTAAGATGTTGCTCCAAGGTTATGAGCCTAATCTGGAACCTTATCTCTCAATGATGCTTCAAGCACACTATGAGCACCACTTGACTGATTTAAAGAGTAGGTGCCGCATATATGTCCCAAAAGGAAGAATCCTGGTTGGGTGCTTGGATGAAACTGGTAGTTTAAACTATGGCCAAGTTTATGTTCGAATAACCATGACCAAAGCAGAGCAAGAAATGGGGCATCAGAATTTCTTCCAGAGGGTGGATGAGGCAACATGTATAGTAACAGGGAAGGTGGTTGTCACCAAAAATCCTTGTCTTCATCCTGGAGACATCAGGGTACTTGAGGCTGTCTATGATGTGGGACTAGAGGAGAAGAATATGGTGGATTGCCTTGTATTTCCCCAGAAAGGAGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

815

Amino Acids

92.11

Weight (kDa)

6.67

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	11 - 94	8.7e-28	RdRP1/2, RRM domain
PH_RDR2	PF24823	111 - 262	9.1e-63	RDR2 PH-like domain
RdRP_helical	PF26252	278 - 363	5.9e-14	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	381 - 815	3.7e-132	RNA dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1892
AccB1I	GGYRCC	1 cut(s)	2145
AccB7I	CCANNNNNTGG	1 cut(s)	2287
AccI	GTMKAC	1 cut(s)	1904
AccII	CGCG	2 cut(s)	8, 162
AccIII	TCCGGA	1 cut(s)	1782
AclI	AACGTT	1 cut(s)	1116
AclWI	GGATC	3 cut(s)	789, 1501, 1965
AcoI	YGGCCR	4 cut(s)	169, 293, 688, 2215
AcsI	RAATTY	4 cut(s)	1429, 1731, 1814, 2272
AcuI	CTGAAG	2 cut(s)	974, 1206
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	2367
AfiI	CCNNNNNNNGG	8 cut(s)	102, 298, 312, 400, 417, 1585, 2287, 2435
AflIII	ACRYGT	1 cut(s)	2300
AjnI	CCWGG	3 cut(s)	1679, 2175, 2350
AjuI	GAANNNNNNNTTGG	2 cut(s)	2211, 2243
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
Alw21I	GWGCWC	3 cut(s)	211, 1599, 2121
Alw26I	GTCTC	8 cut(s)	219, 353, 668, 818, 1088, 1607, 1797, 2349
AlwI	GGATC	3 cut(s)	789, 1501, 1965
AlwNI	CAGNNNCTG	1 cut(s)	997
Ama87I	CYCGRG	3 cut(s)	89, 101, 410
Aor13HI	TCCGGA	1 cut(s)	1782
AoxI	GGCC	7 cut(s)	26, 104, 169, 293, 553, 688, 2215
ApaI	GGGCCC	1 cut(s)	108
ApeKI	GCWGC	4 cut(s)	923, 926, 997, 1529
ApoI	RAATTY	4 cut(s)	1429, 1731, 1814, 2272
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AseI	ATTAAT	1 cut(s)	1103
Asp700I	GAANNNNTTC	2 cut(s)	1663, 2276
AspLEI	GCGC	2 cut(s)	8, 1951
AspS9I	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
AsuC2I	CCSGG	3 cut(s)	292, 340, 395
AsuHPI	GGTGA	9 cut(s)	34, 55, 73, 175, 461, 664, 812, 1768, 2320
AsuII	TTCGAA	1 cut(s)	2230
AvaI	CYCGRG	3 cut(s)	89, 101, 410
AvaII	GGWCC	4 cut(s)	301, 436, 581, 1169
BaeGI	GKGCMC	1 cut(s)	108
BalI	TGGCCA	2 cut(s)	690, 2217
BanI	GGYRCC	1 cut(s)	2145
BanII	GRGCYC	3 cut(s)	108, 211, 1599
BbsI	GAAGAC	3 cut(s)	232, 639, 2336
Bbv12I	GWGCWC	3 cut(s)	211, 1599, 2121
BbvI	GCAGC	4 cut(s)	910, 938, 984, 1541
BciT130I	CCWGG	3 cut(s)	1681, 2177, 2352
BcnI	CCSGG	3 cut(s)	292, 340, 395
BcoDI	GTCTC	8 cut(s)	219, 353, 668, 818, 1088, 1607, 1797, 2349
BfaI	CTAG	4 cut(s)	1533, 1910, 2006, 2393
BfmI	CTRYAG	3 cut(s)	660, 924, 998
BglI	GCCNNNNNGGC	1 cut(s)	415
Bme1390I	CCNGG	6 cut(s)	292, 340, 395, 1681, 2177, 2352
Bme18I	GGWCC	4 cut(s)	301, 436, 581, 1169
BmeT110I	CYCGRG	3 cut(s)	89, 101, 410
BmgT120I	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
BmiI	GGNNCC	6 cut(s)	106, 303, 437, 1170, 2082, 2147
BmrFI	CCNGG	6 cut(s)	292, 340, 395, 1681, 2177, 2352
BmsI	GCATC	4 cut(s)	183, 1962, 2088, 2275
BpiI	GAAGAC	3 cut(s)	232, 639, 2336
BplI	GAGNNNNNCTC	2 cut(s)	1055, 1087
BpmI	CTGGAG	2 cut(s)	395, 2373
Bpu10I	CCTNAGC	1 cut(s)	1173
Bpu14I	TTCGAA	1 cut(s)	2230
BpuEI	CTTGAG	3 cut(s)	530, 992, 2390
BpuMI	CCSGG	3 cut(s)	292, 340, 395
BsaAI	YACGTR	1 cut(s)	1799
BsaBI	GATNNNNATC	2 cut(s)	615, 807
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	160, 290, 2059
BsaWI	WCCGGW	1 cut(s)	1782
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	8 cut(s)	102, 298, 312, 400, 417, 1585, 2287, 2435
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	5 cut(s)	155, 178, 1271, 1333, 2203
Bse3DI	GCAATG	1 cut(s)	1937
Bse8I	GATNNNNATC	2 cut(s)	615, 807
BseAI	TCCGGA	1 cut(s)	1782
BseBI	CCWGG	3 cut(s)	1681, 2177, 2352
BseDI	CCNNGG	3 cut(s)	160, 290, 2059
BseJI	GATNNNNATC	2 cut(s)	615, 807
BseLI	CCNNNNNNNGG	8 cut(s)	102, 298, 312, 400, 417, 1585, 2287, 2435
BseMI	GCAATG	1 cut(s)	1937
BseMII	CTCAG	5 cut(s)	224, 663, 813, 920, 1164
BseNI	ACTGG	5 cut(s)	155, 178, 1271, 1333, 2203
BseRI	GAGGAG	3 cut(s)	68, 211, 2411
BseSI	GKGCMC	1 cut(s)	108
BseX3I	CGGCCG	2 cut(s)	169, 293
BseXI	GCAGC	4 cut(s)	910, 938, 984, 1541
BseYI	CCCAGC	1 cut(s)	708
BsgI	GTGCAG	3 cut(s)	40, 1067, 1548
Bsh1236I	CGCG	2 cut(s)	8, 162
Bsh1285I	CGRYCG	2 cut(s)	172, 296
BshFI	GGCC	7 cut(s)	28, 106, 171, 295, 555, 690, 2217
BshNI	GGYRCC	1 cut(s)	2145
BsiEI	CGRYCG	2 cut(s)	172, 296
BsiHKAI	GWGCWC	3 cut(s)	211, 1599, 2121
BsiHKCI	CYCGRG	3 cut(s)	89, 101, 410
BsiSI	CCGG	6 cut(s)	292, 313, 339, 394, 439, 1783
BslFI	GGGAC	4 cut(s)	232, 1562, 2144, 2403
BslI	CCNNNNNNNGG	8 cut(s)	102, 298, 312, 400, 417, 1585, 2287, 2435
BsmAI	GTCTC	8 cut(s)	219, 353, 668, 818, 1088, 1607, 1797, 2349
BsmBI	CGTCTC	2 cut(s)	668, 1088
BsmFI	GGGAC	4 cut(s)	232, 1562, 2144, 2403
BsmI	GAATGC	2 cut(s)	1724, 1839
BsnI	GGCC	7 cut(s)	28, 106, 171, 295, 555, 690, 2217
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	3 cut(s)	89, 101, 410
Bsp119I	TTCGAA	1 cut(s)	2230
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	4 cut(s)	108, 211, 1599, 2121
Bsp13I	TCCGGA	1 cut(s)	1782
Bsp143I	GATC	6 cut(s)	610, 781, 937, 1424, 1506, 1957
BspANI	GGCC	7 cut(s)	28, 106, 171, 295, 555, 690, 2217
BspCNI	CTCAG	5 cut(s)	223, 664, 814, 919, 1165
BspEI	TCCGGA	1 cut(s)	1782
BspFNI	CGCG	2 cut(s)	8, 162
BspLI	GGNNCC	6 cut(s)	106, 303, 437, 1170, 2082, 2147
BspMAI	CTGCAG	2 cut(s)	928, 1002
BspPI	GGATC	3 cut(s)	789, 1501, 1965
BspT104I	TTCGAA	1 cut(s)	2230
BspT107I	GGYRCC	1 cut(s)	2145
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	1937
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	5 cut(s)	155, 178, 1271, 1333, 2203
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	3 cut(s)	160, 290, 2059
BssMI	GATC	6 cut(s)	610, 781, 937, 1424, 1506, 1957
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	2059
Bst2UI	CCWGG	3 cut(s)	1681, 2177, 2352
Bst4CI	ACNGT	5 cut(s)	34, 455, 829, 1460, 1772
Bst6I	CTCTTC	2 cut(s)	269, 1245
BstACI	GRCGYC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	2000
BstBAI	YACGTR	1 cut(s)	1799
BstBI	TTCGAA	1 cut(s)	2230
BstC8I	GCNNGC	4 cut(s)	136, 336, 371, 1265
BstDEI	CTNAG	8 cut(s)	210, 672, 822, 906, 1060, 1074, 1173, 2015
BstDSI	CCRYGG	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	8, 162
BstHHI	GCGC	2 cut(s)	8, 1951
BstKTI	GATC	6 cut(s)	613, 784, 940, 1427, 1509, 1960
BstMAI	GTCTC	8 cut(s)	219, 353, 668, 818, 1088, 1607, 1797, 2349
BstMBI	GATC	6 cut(s)	610, 781, 937, 1424, 1506, 1957
BstMCI	CGRYCG	2 cut(s)	172, 296
BstNI	CCWGG	3 cut(s)	1681, 2177, 2352
BstNSI	RCATGY	1 cut(s)	2304
BstSCI	CCNGG	6 cut(s)	290, 338, 393, 1679, 2175, 2350
BstSFI	CTRYAG	3 cut(s)	660, 924, 998
BstSLI	GKGCMC	1 cut(s)	108
BstSNI	TACGTA	1 cut(s)	1799
BstUI	CGCG	2 cut(s)	8, 162
BstV1I	GCAGC	4 cut(s)	910, 938, 984, 1541
BstV2I	GAAGAC	3 cut(s)	232, 639, 2336
BstX2I	RGATCY	3 cut(s)	781, 1506, 1957
BstYI	RGATCY	3 cut(s)	781, 1506, 1957
BstZI	CGGCCG	2 cut(s)	169, 293
BsuRI	GGCC	7 cut(s)	28, 106, 171, 295, 555, 690, 2217
BtgI	CCRYGG	1 cut(s)	160
BtsI	GCAGTG	2 cut(s)	972, 1519
BtsIMutI	CAGTG	3 cut(s)	972, 1465, 1519
Cac8I	GCNNGC	4 cut(s)	136, 336, 371, 1265
CaiI	CAGNNNCTG	1 cut(s)	997
CfoI	GCGC	2 cut(s)	8, 1951
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
Cfr42I	CCGCGG	1 cut(s)	163
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	2366
CspCI	CAANNNNNGTGG	2 cut(s)	1276, 1311
CviAII	CATG	8 cut(s)	364, 406, 787, 902, 1864, 1900, 2239, 2301
CviQI	GTAC	1 cut(s)	2366
DdeI	CTNAG	8 cut(s)	210, 672, 822, 906, 1060, 1074, 1173, 2015
DpnI	GATC	6 cut(s)	612, 783, 939, 1426, 1508, 1959
DpnII	GATC	6 cut(s)	610, 781, 937, 1424, 1506, 1957
DraI	TTTAAA	2 cut(s)	2136, 2208
EaeI	YGGCCR	4 cut(s)	169, 293, 688, 2215
EagI	CGGCCG	2 cut(s)	169, 293
Eam1104I	CTCTTC	2 cut(s)	269, 1245
EarI	CTCTTC	2 cut(s)	269, 1245
EciI	GGCGGA	3 cut(s)	29, 35, 248
Ecl136II	GAGCTC	2 cut(s)	209, 1597
EclXI	CGGCCG	2 cut(s)	169, 293
Eco105I	TACGTA	1 cut(s)	1799
Eco130I	CCWWGG	1 cut(s)	2059
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	3 cut(s)	108, 211, 1599
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	4 cut(s)	301, 436, 581, 1169
Eco52I	CGGCCG	2 cut(s)	169, 293
Eco53kI	GAGCTC	2 cut(s)	209, 1597
Eco57I	CTGAAG	2 cut(s)	974, 1206
Eco88I	CYCGRG	3 cut(s)	89, 101, 410
EcoICRI	GAGCTC	2 cut(s)	209, 1597
EcoO109I	RGGNCCY	2 cut(s)	581, 1169
EcoRII	CCWGG	3 cut(s)	1679, 2175, 2350
EcoT14I	CCWWGG	1 cut(s)	2059
EcoT38I	GRGCYC	3 cut(s)	108, 211, 1599
ErhI	CCWWGG	1 cut(s)	2059
Esp3I	CGTCTC	2 cut(s)	668, 1088
FaeI	CATG	8 cut(s)	367, 409, 790, 905, 1867, 1903, 2242, 2304
FalI	AAGNNNNNCTT	4 cut(s)	620, 652, 1652, 1684
FaqI	GGGAC	4 cut(s)	232, 1562, 2144, 2403
FatI	CATG	8 cut(s)	363, 405, 786, 901, 1863, 1899, 2238, 2300
FauI	CCCGC	4 cut(s)	167, 414, 435, 730
FauNDI	CATATG	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	1904
FriOI	GRGCYC	3 cut(s)	108, 211, 1599
FspBI	CTAG	4 cut(s)	1533, 1910, 2006, 2393
GlaI	GCGC	2 cut(s)	7, 1950
GsaI	CCCAGC	1 cut(s)	712
GsuI	CTGGAG	2 cut(s)	395, 2373
HaeIII	GGCC	7 cut(s)	28, 106, 171, 295, 555, 690, 2217
HapII	CCGG	6 cut(s)	292, 313, 339, 394, 439, 1783
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	8, 1951
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	8 cut(s)	367, 409, 790, 905, 1867, 1903, 2242, 2304
Hin6I	GCGC	2 cut(s)	6, 1949
HinP1I	GCGC	2 cut(s)	6, 1949
HincII	GTYRAC	2 cut(s)	352, 1418
HindII	GTYRAC	2 cut(s)	352, 1418
HindIII	AAGCTT	1 cut(s)	1265
HpaII	CCGG	6 cut(s)	292, 313, 339, 394, 439, 1783
HphI	GGTGA	9 cut(s)	34, 55, 73, 175, 461, 664, 812, 1768, 2320
Hpy166II	GTNNAC	5 cut(s)	96, 183, 352, 1418, 1905
Hpy8I	GTNNAC	5 cut(s)	96, 183, 352, 1418, 1905
Hpy99I	CGWCG	2 cut(s)	323, 359
HpyAV	CCTTC	4 cut(s)	94, 1728, 1962, 2311
HpyCH4III	ACNGT	5 cut(s)	34, 455, 829, 1460, 1772
HpyCH4IV	ACGT	3 cut(s)	1081, 1116, 1798
HpyF3I	CTNAG	8 cut(s)	210, 672, 822, 906, 1060, 1074, 1173, 2015
HpySE526I	ACGT	3 cut(s)	1081, 1116, 1798
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	8 cut(s)	367, 409, 790, 905, 1867, 1903, 2242, 2304
HspAI	GCGC	2 cut(s)	6, 1949
Kpn2I	TCCGGA	1 cut(s)	1782
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	6 cut(s)	610, 781, 937, 1424, 1506, 1957
LmnI	GCTCC	4 cut(s)	1108, 1260, 1594, 2061
Lsp1109I	GCAGC	4 cut(s)	910, 938, 984, 1541
LweI	GCATC	4 cut(s)	183, 1962, 2088, 2275
MaeI	CTAG	4 cut(s)	1533, 1910, 2006, 2393
MaeII	ACGT	3 cut(s)	1081, 1116, 1798
MaeIII	GTNAC	8 cut(s)	40, 449, 861, 1237, 1634, 1843, 2308, 2326
MalI	GATC	6 cut(s)	612, 783, 939, 1426, 1508, 1959
MboI	GATC	6 cut(s)	610, 781, 937, 1424, 1506, 1957
MfeI	CAATTG	1 cut(s)	1952
MflI	RGATCY	3 cut(s)	781, 1506, 1957
MhlI	GDGCHC	4 cut(s)	108, 211, 1599, 2121
MlsI	TGGCCA	2 cut(s)	690, 2217
MluCI	AATT	8 cut(s)	1368, 1429, 1731, 1774, 1814, 1887, 1952, 2272
MluNI	TGGCCA	2 cut(s)	690, 2217
MlyI	GAGTC	7 cut(s)	48, 101, 104, 386, 500, 1423, 1829
Mox20I	TGGCCA	2 cut(s)	690, 2217
MroI	TCCGGA	1 cut(s)	1782
MroXI	GAANNNNTTC	2 cut(s)	1663, 2276
MscI	TGGCCA	2 cut(s)	690, 2217
MseI	TTAA	7 cut(s)	525, 888, 1103, 1839, 2046, 2135, 2207
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	2 cut(s)	690, 2217
MspA1I	CMGCKG	4 cut(s)	162, 298, 929, 1342
MspI	CCGG	6 cut(s)	292, 313, 339, 394, 439, 1783
MspR9I	CCNGG	6 cut(s)	292, 340, 395, 1681, 2177, 2352
MssI	GTTTAAAC	1 cut(s)	2208
MunI	CAATTG	1 cut(s)	1952
Mva1269I	GAATGC	2 cut(s)	1724, 1839
MvaI	CCWGG	3 cut(s)	1681, 2177, 2352
MvnI	CGCG	2 cut(s)	8, 162
NciI	CCSGG	3 cut(s)	292, 340, 395
NdeI	CATATG	1 cut(s)	1036
NdeII	GATC	6 cut(s)	610, 781, 937, 1424, 1506, 1957
NlaIII	CATG	8 cut(s)	367, 409, 790, 905, 1867, 1903, 2242, 2304
NlaIV	GGNNCC	6 cut(s)	106, 303, 437, 1170, 2082, 2147
NmeAIII	GCCGAG	1 cut(s)	1388
NmuCI	GTSAC	4 cut(s)	40, 449, 1843, 2326
NspI	RCATGY	1 cut(s)	2304
NspV	TTCGAA	1 cut(s)	2230
PaeR7I	CTCGAG	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	28
PciI	ACATGT	1 cut(s)	2300
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 354
PctI	GAATGC	2 cut(s)	1724, 1839
PdmI	GAANNNNTTC	2 cut(s)	1663, 2276
PfeI	GAWTC	7 cut(s)	715, 854, 874, 1708, 1879, 2027, 2172
PflFI	GACNNNGTC	2 cut(s)	236, 679
PflMI	CCANNNNNTGG	1 cut(s)	2287
PfoI	TCCNGGA	1 cut(s)	2350
PleI	GAGTC	7 cut(s)	47, 100, 104, 385, 499, 1422, 1828
PmeI	GTTTAAAC	1 cut(s)	2208
PpsI	GAGTC	7 cut(s)	47, 100, 104, 385, 499, 1422, 1828
Ppu21I	YACGTR	1 cut(s)	1799
PpuMI	RGGWCCY	2 cut(s)	581, 1169
PscI	ACATGT	1 cut(s)	2300
PshBI	ATTAAT	1 cut(s)	1103
PsiI	TTATAA	1 cut(s)	1892
Psp124BI	GAGCTC	2 cut(s)	211, 1599
Psp1406I	AACGTT	1 cut(s)	1116
Psp5II	RGGWCCY	2 cut(s)	581, 1169
Psp6I	CCWGG	3 cut(s)	1679, 2175, 2350
PspFI	CCCAGC	1 cut(s)	708
PspGI	CCWGG	3 cut(s)	1679, 2175, 2350
PspN4I	GGNNCC	6 cut(s)	106, 303, 437, 1170, 2082, 2147
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
PspPPI	RGGWCCY	2 cut(s)	581, 1169
PspXI	VCTCGAGB	1 cut(s)	89
PstI	CTGCAG	2 cut(s)	928, 1002
PstNI	CAGNNNCTG	1 cut(s)	997
PsuI	RGATCY	3 cut(s)	781, 1506, 1957
PsyI	GACNNNGTC	2 cut(s)	236, 679
RsaI	GTAC	1 cut(s)	2367
RsaNI	GTAC	1 cut(s)	2366
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	2 cut(s)	211, 1599
SacII	CCGCGG	1 cut(s)	163
SaqAI	TTAA	7 cut(s)	525, 888, 1103, 1839, 2046, 2135, 2207
Sau3AI	GATC	6 cut(s)	610, 781, 937, 1424, 1506, 1957
Sau96I	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
SchI	GAGTC	7 cut(s)	48, 101, 104, 386, 500, 1423, 1829
ScrFI	CCNGG	6 cut(s)	292, 340, 395, 1681, 2177, 2352
SduI	GDGCHC	4 cut(s)	108, 211, 1599, 2121
SfaNI	GCATC	4 cut(s)	183, 1962, 2088, 2275
SfcI	CTRYAG	3 cut(s)	660, 924, 998
Sfr274I	CTCGAG	1 cut(s)	89
Sfr303I	CCGCGG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	2230
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	4 cut(s)	301, 436, 581, 1169
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	4 cut(s)	89, 545, 1007, 2369
SmoI	CTYRAG	4 cut(s)	89, 545, 1007, 2369
SnaBI	TACGTA	1 cut(s)	1799
Sse9I	AATT	8 cut(s)	1368, 1429, 1731, 1774, 1814, 1887, 1952, 2272
SseBI	AGGCCT	1 cut(s)	28
SspMI	CTAG	4 cut(s)	1533, 1910, 2006, 2393
SstI	GAGCTC	2 cut(s)	211, 1599
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	6 cut(s)	290, 338, 393, 1679, 2175, 2350
StyI	CCWWGG	1 cut(s)	2059
TaaI	ACNGT	5 cut(s)	34, 455, 829, 1460, 1772
TaiI	ACGT	3 cut(s)	1084, 1119, 1801
TasI	AATT	8 cut(s)	1368, 1429, 1731, 1774, 1814, 1887, 1952, 2272
TauI	GCSGC	7 cut(s)	11, 14, 165, 174, 298, 421, 2151
TfiI	GAWTC	7 cut(s)	715, 854, 874, 1708, 1879, 2027, 2172
Tru1I	TTAA	7 cut(s)	525, 888, 1103, 1839, 2046, 2135, 2207
Tru9I	TTAA	7 cut(s)	525, 888, 1103, 1839, 2046, 2135, 2207
TscAI	CASTG	3 cut(s)	979, 1465, 1519
TseFI	GTSAC	4 cut(s)	40, 449, 1843, 2326
TseI	GCWGC	4 cut(s)	923, 926, 997, 1529
Tsp45I	GTSAC	4 cut(s)	40, 449, 1843, 2326
TspDTI	ATGAA	5 cut(s)	764, 890, 1938, 2208, 2336
TspRI	CASTG	3 cut(s)	979, 1465, 1519
Tth111I	GACNNNGTC	2 cut(s)	236, 679
Van91I	CCANNNNNTGG	1 cut(s)	2287
VpaK11BI	GGWCC	4 cut(s)	301, 436, 581, 1169
VspI	ATTAAT	1 cut(s)	1103
XapI	RAATTY	4 cut(s)	1429, 1731, 1814, 2272
XceI	RCATGY	1 cut(s)	2304
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 1736
XhoI	CTCGAG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	1904
XmnI	GAANNNNTTC	2 cut(s)	1663, 2276
XspI	CTAG	4 cut(s)	1533, 1910, 2006, 2393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.