Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

27653172 .. 27656108

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1184100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGGGGGTGGCAGAGCGACCCACAGTGCGAGTGACAAACATTCCGCAAACAGTCACAGCCCAAGAGCTATTAACCTTCCTCGAGTCGAAACTCGGCCGTGACTCAGTCTTCGCCGTCGAAATCAGCAGCGATCACAAGAACTGGAAGTCACGCGGCTTCGGCCGCATCCAGTTCACGACCCTCAAGGCCAAATTGGAAGCTCAGTCACTCTCCCTGAAAAACGACCTCGTTTTCAAGTCCGAAAGCCTCCGCCTTTCCGAGACCTACGACGACATCATCCAGCGGCCGGTGGACCCGAAGCGCCGGGTAAACGGCGCCGTTTTGCATGTGGGTTTTATGGTGAAGGAAGATTGCATGAATGTGCTGGAGACGTGGGAGGGCGTGAGGGCCTGGGTCATGCCCGAGAGGAAGCGGGTCGAGTTCTGCGTATGGCGGAAAGACGAGTGTTATAAGCTGGAGATTGCGTTTGAGAATGTTATGGATTCTGTTGGGTGCTGCTTGGGTGGCGAGAAAGTGAATGCCCTGCTTTTGAAGCTAAAGTTTGGTCCGAGGATCTTTCGAAAAGTTTCAGGACCTAACATAGCAGCCAAGTTCAGCGCTGATCGTTATCATGTTTGTAAGGAGGATTATGATTACCTCTGGGTACGAACTACTGATTTTTCGGACATGAAGTCCCTCGGTTATGCTACTTCATTCTGCTGGGAGATTGAGGAGGAGTTTTCTGTGCCAGATGTATTCGAGTGTTTCCCGTTCTATAAAGATAATGATGTGGTGGATCTCATTTTAGAGGACGGTGAAAGATACTGTTTGCGGTCGGATACAGTTCCACTTGTGAACTGCGGATCAAATTCAAAGTTGCCATATGAGGTCCTCTTCCAAATCAATGCACTCGTTCATTCCCAGAAAATTAGTCTTGCAGCAGCGGACTCTGATCTGATTGAGTTCCTTAGTGGTTTAAGTGTAGACACTGCTAATGCGCTTCTTGAGAAGCTGCACAAGCGCAATACCATTTGTTATGACCCTCTATTATTCGTAAGGATTCAATCACATGACTTGGAAGGAAAGTCTAAGAGTCGTCCCTCAGCCCATAAAAGATTAGTGGAACATAACGTAATGAGTGTTCATAGAGCCTTGATTACCCCATCAAAGATTTGTTGCTGTGGGCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCAGACTATGCTTCCGATTTTATGAGAGTTACATTCGTTGATGAGGATTGGGGTAAGCTTTCTCCAAATGCTCTTTCCACAAGCATTCACAACGGTATGTTTACAAAACCCCATAGAACTGGAATATATCATCGGATATTGTCTATTCTTCGAGATGGGATTGTGATAGGGGAAAAGAAATTTGAGTTTCTGGCTTTCTCAGCTAGTCAACTTCGATCCAACTCTGTTTGGATGTTTTCTTCTAATGACAAAGTAAAAGCGGAAGATATTAGAGAATGGATGGGCTGCTTCACCAAAATCCGGAGCGTATCTAAGTGTGCAGCTAGGATGGGCCAACTATTCAGTTCTTCTACACAAACTCTTGTTGTTCCTGCACAAGATGTAGAGGTTATTCCTGACGTTGAGACTTCTTCTGATGGAGTTACGTACTGCTTCTCGGATGGTATAGGAAAGATTTCTCTATCTTTTGCCAGGCAAATTGCTCACAAGTGTGGTTTGGATCATATTCCTTCAGCATTTCAAATTCGATATGGTGGATATAAAGGGGTTATAGCTGTTGACCGTAATTCCTTTCGGAAGCTATCTTTGCGTGGCAGTATGCTCAAATTTGAGTCAAAAAACAGAATGCTCAATGTTACCAAATGGACTGATTCCTCGCCCTGCTATCTGAATCGAGAGATTATCATCCTCATGTCTACCTTGGGGGTAAAGGATGAAACATTTGAGGCATTGCAAGAGGAACAATTGCGTCTTCTGGGGAAAATGCGGACAGAAAGAGCTGCAGCGTTGAATGTCTTAGAGGGATTCAGTGGGGCTAGTTCCAAAAATATTCTTGTAAAGATGTTACATCATGGTTATGAACCAAATGTGGAACCTTACCTCTCAATGATGCTTCAGTCATATTATGAGAACTACTTGTCTGATATAAAAAGTAGATGCCGCATATACGTCCCGAAAGGCCGGATCCTGGTTGGGTGCTTGGATGAAACTGGAAGTTTAAACTATGGTCAAGTTTATGTTCGAATAACCATGACAAAAGATGAGCTAGAAATGGGGGATCAGAGTTTCTTCCAGAAGGTTGATGAAACAACATGTGTAGTAACCGGGAAGGTGGTTGTCACAAAAAATCCTTGTCTTCACCCAGGAGACGTCCGGGTACTAGAGGCCGTATATGATGTGGTACTGGAGGAGAAGAATTTGATGGATTGCCTTATCTTTCCCCAAAAAGGAGAAAGGTATACATCACACTATTACTGGACTTATTTTCATCATGATGATTACGATTTTTCTTTTCACCAATTATGGTATGCTTGTGACAATATTATTGGAGACGTTGCACTGCTTTTGTTTTCCTTTCCCTGTATAATCCACTCTTTCTACTTTCATCCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

866

Amino Acids

98.76

Weight (kDa)

6.66

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	8 - 91	8.2e-27	RdRP1/2, RRM domain
PH_RDR2	PF24823	108 - 255	1.2e-65	RDR2 PH-like domain
RdRP_helical	PF26252	276 - 357	1.6e-14	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	379 - 813	3e-131	RNA dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AatII	GACGTC	1 cut(s)	2355
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	3 cut(s)	963, 1898, 2441
AccII	CGCG	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	1503
AclWI	GGATC	8 cut(s)	560, 783, 850, 1413, 1710, 2161, 2174, 2268
AcoI	YGGCCR	3 cut(s)	94, 160, 284
AcsI	RAATTY	5 cut(s)	847, 1382, 1725, 1808, 2398
AcuI	CTGAAG	2 cut(s)	1698, 2081
AcyI	GRCGYC	2 cut(s)	315, 2352
AfaI	GTAC	4 cut(s)	645, 1631, 2361, 2385
AfeI	AGCGCT	1 cut(s)	598
AfiI	CCNNNNNNNGG	4 cut(s)	286, 1503, 2170, 2429
AflIII	ACRYGT	1 cut(s)	2294
AgsI	TTSAA	7 cut(s)	235, 532, 852, 1043, 1175, 1724, 1993
AhdI	GACNNNNNGTC	1 cut(s)	670
AjiI	CACGTC	1 cut(s)	372
AjnI	CCWGG	4 cut(s)	389, 1673, 2169, 2344
AjuI	GAANNNNNNNTTGG	2 cut(s)	1261, 1293
AleI	CACNNNNGTG	1 cut(s)	1692
Alw26I	GTCTC	5 cut(s)	254, 362, 1601, 2343, 2526
AlwI	GGATC	8 cut(s)	560, 783, 850, 1413, 1710, 2161, 2174, 2268
Ama87I	CYCGRG	2 cut(s)	80, 401
Aor13HI	TCCGGA	1 cut(s)	1503
Aor51HI	AGCGCT	1 cut(s)	598
AoxI	GGCC	9 cut(s)	94, 160, 186, 284, 387, 1163, 1534, 2161, 2367
ApoI	RAATTY	5 cut(s)	847, 1382, 1725, 1808, 2398
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp700I	GAANNNNTTC	2 cut(s)	565, 1657
AspLEI	GCGC	5 cut(s)	303, 317, 599, 979, 1002
AspS9I	GGNCC	7 cut(s)	292, 387, 545, 572, 868, 1163, 1534
AsuC2I	CCSGG	3 cut(s)	305, 2308, 2357
AsuHPI	GGTGA	5 cut(s)	352, 806, 1486, 2333, 2489
AsuII	TTCGAA	2 cut(s)	559, 2224
AvaI	CYCGRG	2 cut(s)	80, 401
AvaII	GGWCC	4 cut(s)	292, 545, 572, 868
BamHI	GGATCC	1 cut(s)	2166
BanI	GGYRCC	1 cut(s)	314
BbsI	GAAGAC	3 cut(s)	100, 1946, 2330
BbvCI	CCTCAGC	1 cut(s)	1081
BccI	CCATC	7 cut(s)	1150, 1352, 1477, 1525, 1613, 1637, 2398
BceAI	ACGGC	5 cut(s)	81, 98, 302, 328, 2354
BciT130I	CCWGG	4 cut(s)	391, 1675, 2171, 2346
BciVI	GTATCC	1 cut(s)	811
BcnI	CCSGG	3 cut(s)	305, 2308, 2357
BcoDI	GTCTC	5 cut(s)	254, 362, 1601, 2343, 2526
BfaI	CTAG	5 cut(s)	1407, 1527, 2019, 2249, 2363
BfmI	CTRYAG	1 cut(s)	1983
BfoI	RGCGCY	3 cut(s)	304, 318, 600
BfuI	GTATCC	1 cut(s)	811
Bme1390I	CCNGG	7 cut(s)	305, 391, 1675, 2171, 2308, 2346, 2357
Bme18I	GGWCC	4 cut(s)	292, 545, 572, 868
BmeRI	GACNNNNNGTC	1 cut(s)	670
BmeT110I	CYCGRG	2 cut(s)	80, 401
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	7 cut(s)	292, 387, 545, 572, 868, 1163, 1534
BmiI	GGNNCC	4 cut(s)	294, 316, 2076, 2168
BmrFI	CCNGG	7 cut(s)	305, 391, 1675, 2171, 2308, 2346, 2357
BmsI	GCATC	3 cut(s)	174, 2082, 2129
BpiI	GAAGAC	3 cut(s)	100, 1946, 2330
BpmI	CTGGAG	3 cut(s)	386, 476, 2408
Bpu10I	CCTNAGC	2 cut(s)	1081, 1167
Bpu14I	TTCGAA	2 cut(s)	559, 2224
BpuEI	CTTGAG	2 cut(s)	167, 1004
BpuMI	CCSGG	3 cut(s)	305, 2308, 2357
BsaAI	YACGTR	1 cut(s)	1629
BsaBI	GATNNNNATC	2 cut(s)	606, 1886
BsaHI	GRCGYC	2 cut(s)	315, 2352
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	6 cut(s)	390, 548, 676, 1902, 2344, 2591
BsaWI	WCCGGW	1 cut(s)	1503
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 1503, 2170, 2429
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	6 cut(s)	146, 169, 1327, 2197, 2391, 2462
Bse3DI	GCAATG	1 cut(s)	1931
Bse8I	GATNNNNATC	2 cut(s)	606, 1886
BseAI	TCCGGA	1 cut(s)	1503
BseBI	CCWGG	4 cut(s)	391, 1675, 2171, 2346
BseDI	CCNNGG	6 cut(s)	390, 548, 676, 1902, 2344, 2591
BseJI	GATNNNNATC	2 cut(s)	606, 1886
BseLI	CCNNNNNNNGG	4 cut(s)	286, 1503, 2170, 2429
BseMI	GCAATG	1 cut(s)	1931
BseMII	CTCAG	5 cut(s)	117, 215, 1095, 1158, 1416
BseNI	ACTGG	6 cut(s)	146, 169, 1327, 2197, 2391, 2462
BseRI	GAGGAG	3 cut(s)	725, 728, 2405
BseX3I	CGGCCG	3 cut(s)	94, 160, 284
BseYI	CCCAGC	1 cut(s)	699
BsgI	GTGCAG	3 cut(s)	977, 1542, 1560
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	4 cut(s)	97, 163, 287, 815
BshFI	GGCC	9 cut(s)	96, 162, 188, 286, 389, 1165, 1536, 2163, 2369
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	4 cut(s)	97, 163, 287, 815
BsiHKCI	CYCGRG	2 cut(s)	80, 401
BsiSI	CCGG	6 cut(s)	287, 304, 1504, 2164, 2307, 2356
BslFI	GGGAC	3 cut(s)	658, 1062, 2138
BslI	CCNNNNNNNGG	4 cut(s)	286, 1503, 2170, 2429
BsmAI	GTCTC	5 cut(s)	254, 362, 1601, 2343, 2526
BsmBI	CGTCTC	3 cut(s)	362, 2343, 2526
BsmFI	GGGAC	3 cut(s)	658, 1062, 2138
BsmI	GAATGC	3 cut(s)	523, 1287, 1833
BsnI	GGCC	9 cut(s)	96, 162, 188, 286, 389, 1165, 1536, 2163, 2369
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	2 cut(s)	80, 401
Bsp119I	TTCGAA	2 cut(s)	559, 2224
Bsp13I	TCCGGA	1 cut(s)	1503
BspANI	GGCC	9 cut(s)	96, 162, 188, 286, 389, 1165, 1536, 2163, 2369
BspCNI	CTCAG	5 cut(s)	116, 214, 1094, 1159, 1415
BspEI	TCCGGA	1 cut(s)	1503
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	2473
BspLI	GGNNCC	4 cut(s)	294, 316, 2076, 2168
BspMAI	CTGCAG	1 cut(s)	1987
BspPI	GGATC	8 cut(s)	560, 783, 850, 1413, 1710, 2161, 2174, 2268
BspT104I	TTCGAA	2 cut(s)	559, 2224
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	1931
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	6 cut(s)	146, 169, 1327, 2197, 2391, 2462
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	6 cut(s)	390, 548, 676, 1902, 2344, 2591
BssNAI	GTATAC	1 cut(s)	2442
BssNI	GRCGYC	2 cut(s)	315, 2352
BssT1I	CCWWGG	2 cut(s)	1902, 2591
Bst1107I	GTATAC	1 cut(s)	2442
Bst2UI	CCWGG	4 cut(s)	391, 1675, 2171, 2346
Bst4CI	ACNGT	7 cut(s)	25, 52, 794, 806, 823, 1298, 1766
Bst6I	CTCTTC	1 cut(s)	878
BstACI	GRCGYC	2 cut(s)	315, 2352
BstAPI	GCANNNNNTGC	1 cut(s)	1211
BstBAI	YACGTR	1 cut(s)	1629
BstBI	TTCGAA	2 cut(s)	559, 2224
BstDEI	CTNAG	9 cut(s)	103, 201, 947, 1068, 1081, 1167, 1402, 1515, 1999
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	3 cut(s)	304, 318, 600
BstHHI	GCGC	5 cut(s)	303, 317, 599, 979, 1002
BstMAI	GTCTC	5 cut(s)	254, 362, 1601, 2343, 2526
BstMCI	CGRYCG	4 cut(s)	97, 163, 287, 815
BstMWI	GCNNNNNNNGC	8 cut(s)	159, 162, 504, 532, 997, 1211, 1403, 1789
BstNI	CCWGG	4 cut(s)	391, 1675, 2171, 2346
BstNSI	RCATGY	2 cut(s)	329, 2298
BstSCI	CCNGG	7 cut(s)	303, 389, 1673, 2169, 2306, 2344, 2355
BstSFI	CTRYAG	1 cut(s)	1983
BstSNI	TACGTA	1 cut(s)	1629
BstUI	CGCG	1 cut(s)	153
BstV2I	GAAGAC	3 cut(s)	100, 1946, 2330
BstX2I	RGATCY	3 cut(s)	552, 775, 2166
BstXI	CCANNNNNNTGG	1 cut(s)	1322
BstYI	RGATCY	3 cut(s)	552, 775, 2166
BstZ17I	GTATAC	1 cut(s)	2442
BstZI	CGGCCG	3 cut(s)	94, 160, 284
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	9 cut(s)	96, 162, 188, 286, 389, 1165, 1536, 2163, 2369
BtrI	CACGTC	1 cut(s)	372
BtsI	GCAGTG	2 cut(s)	966, 2540
BtsIMutI	CAGTG	4 cut(s)	30, 966, 2017, 2540
CciI	TCATGA	1 cut(s)	2473
CfoI	GCGC	5 cut(s)	303, 317, 599, 979, 1002
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	7 cut(s)	292, 387, 545, 572, 868, 1163, 1534
CseI	GACGC	1 cut(s)	1940
Csp6I	GTAC	4 cut(s)	644, 1630, 2360, 2384
CviQI	GTAC	4 cut(s)	644, 1630, 2360, 2384
DdeI	CTNAG	9 cut(s)	103, 201, 947, 1068, 1081, 1167, 1402, 1515, 1999
DinI	GGCGCC	1 cut(s)	316
DraI	TTTAAA	1 cut(s)	2202
DriI	GACNNNNNGTC	1 cut(s)	670
EaeI	YGGCCR	3 cut(s)	94, 160, 284
EagI	CGGCCG	3 cut(s)	94, 160, 284
Eam1104I	CTCTTC	1 cut(s)	878
Eam1105I	GACNNNNNGTC	1 cut(s)	670
EarI	CTCTTC	1 cut(s)	878
EciI	GGCGGA	2 cut(s)	239, 448
EclXI	CGGCCG	3 cut(s)	94, 160, 284
Eco105I	TACGTA	1 cut(s)	1629
Eco130I	CCWWGG	2 cut(s)	1902, 2591
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	4 cut(s)	292, 545, 572, 868
Eco47III	AGCGCT	1 cut(s)	598
Eco52I	CGGCCG	3 cut(s)	94, 160, 284
Eco57I	CTGAAG	2 cut(s)	1698, 2081
Eco88I	CYCGRG	2 cut(s)	80, 401
EcoO109I	RGGNCCY	3 cut(s)	387, 572, 868
EcoRII	CCWGG	4 cut(s)	389, 1673, 2169, 2344
EcoT14I	CCWWGG	2 cut(s)	1902, 2591
EgeI	GGCGCC	1 cut(s)	316
EheI	GGCGCC	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	1902, 2591
Esp3I	CGTCTC	3 cut(s)	362, 2343, 2526
FaqI	GGGAC	3 cut(s)	658, 1062, 2138
FauI	CCCGC	1 cut(s)	405
FauNDI	CATATG	1 cut(s)	862
FblI	GTMKAC	3 cut(s)	963, 1898, 2441
FspBI	CTAG	5 cut(s)	1407, 1527, 2019, 2249, 2363
GlaI	GCGC	5 cut(s)	302, 316, 598, 978, 1001
GsaI	CCCAGC	1 cut(s)	703
GsuI	CTGGAG	3 cut(s)	386, 476, 2408
HaeII	RGCGCY	3 cut(s)	304, 318, 600
HaeIII	GGCC	9 cut(s)	96, 162, 188, 286, 389, 1165, 1536, 2163, 2369
HapII	CCGG	6 cut(s)	287, 304, 1504, 2164, 2307, 2356
HgaI	GACGC	1 cut(s)	1940
HhaI	GCGC	5 cut(s)	303, 317, 599, 979, 1002
Hin1I	GRCGYC	2 cut(s)	315, 2352
Hin6I	GCGC	5 cut(s)	301, 315, 597, 977, 1000
HinP1I	GCGC	5 cut(s)	301, 315, 597, 977, 1000
HincII	GTYRAC	2 cut(s)	1412, 1762
HindII	GTYRAC	2 cut(s)	1412, 1762
HindIII	AAGCTT	1 cut(s)	1259
HpaII	CCGG	6 cut(s)	287, 304, 1504, 2164, 2307, 2356
HphI	GGTGA	5 cut(s)	352, 806, 1486, 2333, 2489
Hpy99I	CGWCG	2 cut(s)	119, 272
HpyAV	CCTTC	6 cut(s)	85, 337, 1052, 1722, 2272, 2305
HpyCH4III	ACNGT	7 cut(s)	25, 52, 794, 806, 823, 1298, 1766
HpyCH4IV	ACGT	7 cut(s)	371, 1110, 1602, 1628, 2151, 2352, 2535
HpyF10VI	GCNNNNNNNGC	8 cut(s)	159, 162, 504, 532, 997, 1211, 1403, 1789
HpyF3I	CTNAG	9 cut(s)	103, 201, 947, 1068, 1081, 1167, 1402, 1515, 1999
HpySE526I	ACGT	7 cut(s)	371, 1110, 1602, 1628, 2151, 2352, 2535
Hsp92I	GRCGYC	2 cut(s)	315, 2352
HspAI	GCGC	5 cut(s)	301, 315, 597, 977, 1000
KasI	GGCGCC	1 cut(s)	314
Kpn2I	TCCGGA	1 cut(s)	1503
LmnI	GCTCC	1 cut(s)	1506
LweI	GCATC	3 cut(s)	174, 2082, 2129
MaeI	CTAG	5 cut(s)	1407, 1527, 2019, 2249, 2363
MaeII	ACGT	7 cut(s)	371, 1110, 1602, 1628, 2151, 2352, 2535
MfeI	CAATTG	1 cut(s)	1946
MflI	RGATCY	3 cut(s)	552, 775, 2166
Mly113I	GGCGCC	1 cut(s)	315
MlyI	GAGTC	5 cut(s)	92, 95, 920, 1081, 1823
MmeI	TCCRAC	2 cut(s)	795, 1446
MroI	TCCGGA	1 cut(s)	1503
MroXI	GAANNNNTTC	2 cut(s)	565, 1657
MseI	TTAA	3 cut(s)	71, 956, 2201
MslI	CAYNNNNRTG	5 cut(s)	359, 1692, 1892, 2058, 2475
MspA1I	CMGCKG	2 cut(s)	283, 923
MspI	CCGG	6 cut(s)	287, 304, 1504, 2164, 2307, 2356
MspR9I	CCNGG	7 cut(s)	305, 391, 1675, 2171, 2308, 2346, 2357
MssI	GTTTAAAC	1 cut(s)	2202
MunI	CAATTG	1 cut(s)	1946
Mva1269I	GAATGC	3 cut(s)	523, 1287, 1833
MvaI	CCWGG	4 cut(s)	391, 1675, 2171, 2346
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	8 cut(s)	159, 162, 504, 532, 997, 1211, 1403, 1789
NarI	GGCGCC	1 cut(s)	315
NciI	CCSGG	3 cut(s)	305, 2308, 2357
NdeI	CATATG	1 cut(s)	862
NlaIV	GGNNCC	4 cut(s)	294, 316, 2076, 2168
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	7 cut(s)	31, 52, 98, 147, 204, 2320, 2516
NspI	RCATGY	2 cut(s)	329, 2298
NspV	TTCGAA	2 cut(s)	559, 2224
OliI	CACNNNNGTG	1 cut(s)	1692
PaeR7I	CTCGAG	1 cut(s)	80
PagI	TCATGA	1 cut(s)	2473
PciI	ACATGT	1 cut(s)	2294
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	3 cut(s)	523, 1287, 1833
PdmI	GAANNNNTTC	2 cut(s)	565, 1657
PfeI	GAWTC	5 cut(s)	482, 1039, 1853, 1873, 2007
PflFI	GACNNNGTC	1 cut(s)	104
PleI	GAGTC	5 cut(s)	91, 95, 920, 1080, 1822
PluTI	GGCGCC	1 cut(s)	318
PmeI	GTTTAAAC	1 cut(s)	2202
PpsI	GAGTC	5 cut(s)	91, 95, 920, 1080, 1822
Ppu21I	YACGTR	1 cut(s)	1629
PpuMI	RGGWCCY	2 cut(s)	572, 868
PscI	ACATGT	1 cut(s)	2294
PsiI	TTATAA	1 cut(s)	450
Psp5II	RGGWCCY	2 cut(s)	572, 868
Psp6I	CCWGG	4 cut(s)	389, 1673, 2169, 2344
PspFI	CCCAGC	1 cut(s)	699
PspGI	CCWGG	4 cut(s)	389, 1673, 2169, 2344
PspN4I	GGNNCC	4 cut(s)	294, 316, 2076, 2168
PspPI	GGNCC	7 cut(s)	292, 387, 545, 572, 868, 1163, 1534
PspPPI	RGGWCCY	2 cut(s)	572, 868
PspXI	VCTCGAGB	1 cut(s)	80
PsrI	GAACNNNNNNTAC	2 cut(s)	1104, 1136
PstI	CTGCAG	1 cut(s)	1987
PsuI	RGATCY	3 cut(s)	552, 775, 2166
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	4 cut(s)	645, 1631, 2361, 2385
RsaNI	GTAC	4 cut(s)	644, 1630, 2360, 2384
RseI	CAYNNNNRTG	5 cut(s)	359, 1692, 1892, 2058, 2475
SaqAI	TTAA	3 cut(s)	71, 956, 2201
Sau96I	GGNCC	7 cut(s)	292, 387, 545, 572, 868, 1163, 1534
SchI	GAGTC	5 cut(s)	92, 95, 920, 1081, 1823
ScrFI	CCNGG	7 cut(s)	305, 391, 1675, 2171, 2308, 2346, 2357
SfaNI	GCATC	3 cut(s)	174, 2082, 2129
SfcI	CTRYAG	1 cut(s)	1983
SfoI	GGCGCC	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	80
SfuI	TTCGAA	2 cut(s)	559, 2224
SinI	GGWCC	4 cut(s)	292, 545, 572, 868
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	5 cut(s)	359, 1692, 1892, 2058, 2475
SmlI	CTYRAG	3 cut(s)	80, 182, 983
SmoI	CTYRAG	3 cut(s)	80, 182, 983
SnaBI	TACGTA	1 cut(s)	1629
SspDI	GGCGCC	1 cut(s)	314
SspI	AATATT	2 cut(s)	2032, 2524
SspMI	CTAG	5 cut(s)	1407, 1527, 2019, 2249, 2363
StyD4I	CCNGG	7 cut(s)	303, 389, 1673, 2169, 2306, 2344, 2355
StyI	CCWWGG	2 cut(s)	1902, 2591
TaaI	ACNGT	7 cut(s)	25, 52, 794, 806, 823, 1298, 1766
TaiI	ACGT	7 cut(s)	374, 1113, 1605, 1631, 2154, 2355, 2538
TauI	GCSGC	4 cut(s)	156, 165, 286, 2145
TfiI	GAWTC	5 cut(s)	482, 1039, 1853, 1873, 2007
Tru1I	TTAA	3 cut(s)	71, 956, 2201
Tru9I	TTAA	3 cut(s)	71, 956, 2201
TscAI	CASTG	4 cut(s)	30, 973, 2017, 2547
TseFI	GTSAC	7 cut(s)	31, 52, 98, 147, 204, 2320, 2516
Tsp45I	GTSAC	7 cut(s)	31, 52, 98, 147, 204, 2320, 2516
TspRI	CASTG	4 cut(s)	30, 973, 2017, 2547
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	4 cut(s)	292, 545, 572, 868
XapI	RAATTY	5 cut(s)	847, 1382, 1725, 1808, 2398
XceI	RCATGY	2 cut(s)	329, 2298
XhoI	CTCGAG	1 cut(s)	80
XmiI	GTMKAC	3 cut(s)	963, 1898, 2441
XmnI	GAANNNNTTC	2 cut(s)	565, 1657
XspI	CTAG	5 cut(s)	1407, 1527, 2019, 2249, 2363
ZraI	GACGTC	1 cut(s)	2353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.