Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

12217270 .. 12222038

Gene Structure 4769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3375 bp

ATGGGCGCGGCGGCGGAGGCGGAGAGGCCTACCGTCCGAGTCACCAACATCCCCTGCACCATCACCGCCAAAGACCTCCTCACCTTCCTCGAGTCCACTCTGGGGCCCGACTCCATCTTCGCCATCGAAATCGCCAGCGACCACAAGAACTGGAAATCCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTATCCCACAAAGGCAGAGCTCAGTCTCTCTCCTCCTCCGCTGACCTCGTCTTCAAGTCCCACAACCTCCGCCTCTTCGACACCAACGATGACATCATCCCCCGGCCGCTGGACCCCAAGCACCGGCTCGACGACACCCTTTTGCACGCCGGGTTTGTCGTCAACGACGAGACCATGAGCGTGCTGGAGTCGTGGGAGGGCGTCCGGGCTTGGGTCATGCCCGAGAGGCGGCGGGTCGAGTTTTGGGTCCGGCGGGGCGGTGACTGTTTCAAGATGGAGGTTGCGTTTGAGAATATCGTGGAGTCTGTTGGGTGCTGTTTGGGCGGGGATAAAGTTAATGCTCTGCTTTTGAAGCTCAAGTTTGGCCCAAAGATTTTTCGGAAAGTATCAGGACCTAATGTAGCTTCCAAGTTTGGTACTGATCGGTATCACTTTTGCAAGGAAGACTTTGATTATCTGTGGGTGAGGACTACGGATTTTTCTGAGACGAAGTCGATTGGCCATTCGACTTCGTTTTGCTGGGAGATTCAGGAGGACTTTTTGGTGGCAGGTCTTTTTATGAAGTTTCCGAGCTTTAGGAAAGATGTGGTGGATCTCATGTTTGAGGATGGTGATGGGTATCTTTCGGTTTCTGAGACAGTTCCGCTTGTGAAATGTGAAGCAGATTCAGAGTTACCTTATGAGATTCTTTTCCAGCTTAATGCACTTGTTCATGCTCAGAAGATTAGCCTTGCTGCAGCGGAGTGTGATCTGATTGAGTTCTTTGGTGGTTTGAGTATGGACACTGCTAATGTGCTTCTTCAGAAGCTGCAGATGCTCAAGACCACTTGTTATGACCCTCTATCATATGTAAAGGTGCAGTTGCAACTCTTAGAGGGGAACTCTAAGAAACGTCTCTCCCCCCATCAAAGATTAATGGAGCATAACGTTATGAGTTGTCATAGAGCCTTGATTACCCCATCAAAGATTTACTGCTTGGGTCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCTCAATATGCTTCAGATTTTATGAGGGTTACATTTGTTGAAGAGGATTGGAGCAAGCTTCCAGTAAATGCTCTCTCCACAAGTATTGAACAAGGTTTCTTTGCAAAACCTTTTAGAACTGGAATATATCAGCGGATATTGTCTATTCTTCGAGATGGAATTGTGATTGGAGATAAAAGATTTGAGTTTCTGGCTTTCTCGGCGAGTCAACTCCGATCAAATTCTGTTTGGATGTTTGCTTCAAATGACAGTGTAAAGGCAGAAGATATTAGAAAATGGATGGGTTGCTTCCACAAGATCCGCAGTGTATCTAAATGTGCAGCTAGGATGGGTCAGCTATTCAGTTCTTCAACGCAAACTCTTGTTGTTCCTCAACAGGATGTGGAGCTCATTCCTGACATTGAGACTTCTTCTGATGGTGTGAGTTACTGCTTCTCTGATGGTATTGGAAAGATTTCCTTATCTTTTGCCAGGCAAGTTGCTCAAAAGTGTGGACTGAATCACACTCCTTCGGCATTCCAAATTCGATATGGTGGATATAAAGGGGTGATAGCCATTGACCGTAATTCTTTCCGGAAGCTGTCTCTACGTAGTAGTATGCTCAAATTTGAGTCGAACAACAGAATGCTTAATGTCACTAAATGGAGTTCCTCCATGCCCTGCTTTCTGAATCGAGAAATTATAACCCTCATGTCTACGCTAGGGGTAGAGGATGAAGCATTTGAAGCATTGCAACAGGCGCAATTGGATCTGTTAGGAAGGATGCGGAAAGAAAGAAATGTAGCACTAACTGCCCTAGAGAAACTAAGCGGTGCTGATTCCAATAACATTCTTGTTAAGATGTTGCTCCAAGGTTATGAGCCTAATCTGGAACCTTATCTCTCAATGATGCTTCAAGCACACTATGAGCACCACTTGACTGATTTAAAGAGTAGGTGCCGCATATATGTCCCAAAAGGAAGAATCCTGGTTGGGTGCTTGGATGAAACTGGTAGTTTAAACTATGGCCAAGTTTATGTTCGAATAACCATGACCAAAGCAGAGCAAGAAATGGGGCATCAGAATTTCTTCCAGAGGGTGGATGAGGCAACATGTATAGTAACAGGGAAGGTGGTTGTCACCAAAAATCCTTGTCTTCATCCTGGAGACATCAGGGTACTTGAGGCTGTCTATGATGTGGGACTAGAGGAGAAGAATATGGTGGATTGCCTTGTATTTCCCCAGAAAGGAGAAAGGCCTCATCCAAATGAATGCTCCGGGGGTGATCTGGACGGAGATTTGTTTTTTATAAGTTGGGATAAAAGTCTTGTTCCTCCTCATACTGTACCTCCGATGGACTACTCTGCACGGAGACCTCGCAATATGGATCACGATGTGACTTTAGAGGAAATTCAAAAGTTCTTTGTGGATTACATGATAAATGATAATTTGGGTGCCATCTCTACTGCACATCTAGTTCATTCTGACCACGAACCAGAAAAAGCCCGGAGTAAAAAATGCCTGGAGTTGGCAGACCTGCACTCCATGGCTGTTGACTTTGCCAAAACTGGTGCACCAGCTGAAATGTCCTGGATTTTAAAACCAAGAGAATTTCCGGATTTCATGGAAAGGGTGGACAAACCGATGTACATCTCCGATGGGGCATTAGGAAAGCTATACCGTGCAATTCTTAGCTCAGTGGTTCAAGAACAAACAACTGTTGTCTGGTCAGAGCAGATGGCTCAAACAGCTTATGACAGGGAGCTTGAAGCGCAAGGTTTCGAGTCCTTTCTTGACATTGCAGAGAGTCACAGGGACAAATACAAGGAGAAGATGAGAAGTCTCATGAACTATTATGAAGCAGCGACTGAAGATGAAATACTGACTGGTAACCTCCGAAACCGTGCAGCCTATCTGCAGCGCGATAATAGGAGGTATTTTGACTTGAAGGATCGAATCTTGCTGTCACTCAAGACCCTACAGAAGGAAGCGAAAGGATGGTTTGAAAGCAGCTGCAAGGTGAGTGAGCAGCAGCAGTTGGCCTCAGCATGGTACCATGTGACTTACAACTCATCTTATTTCCAGAAAGACATGAACTGCCTGAGCTTTCCATGGATTGTGGGCGACATTCTGGTCAACATCAAGTCTCTGAATAGCCGAAGAAACCGCACGGTTACAAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1124

Amino Acids

127.84

Weight (kDa)

6.36

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	11 - 94	3.2e-27	RdRP1/2, RRM domain
PH_RDR2	PF24823	111 - 262	1e-62	RDR2 PH-like domain
RdRP_helical	PF26252	278 - 363	2e-13	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	381 - 959	2.1e-191	RNA dependent RNA polymerase
RdRP_head	PF26253	980 - 1119	1.1e-39	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1892, 2498
AasI	GACNNNNNNGTC	1 cut(s)	3320
Acc36I	ACCTGC	2 cut(s)	728, 2733
Acc65I	GGTACC	1 cut(s)	3240
AccB1I	GGYRCC	3 cut(s)	2145, 2642, 3240
AccB7I	CCANNNNNTGG	1 cut(s)	2287
AccI	GTMKAC	1 cut(s)	1904
AccII	CGCG	3 cut(s)	8, 162, 3111
AccIII	TCCGGA	2 cut(s)	1782, 2803
AclI	AACGTT	1 cut(s)	1116
AclWI	GGATC	5 cut(s)	789, 1501, 1965, 2583, 3147
AcoI	YGGCCR	4 cut(s)	169, 293, 688, 2215
AcsI	RAATTY	6 cut(s)	1429, 1731, 1814, 2272, 2598, 2798
AcuI	CTGAAG	3 cut(s)	974, 1206, 3078
AcyI	GRCGYC	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	2584
AfaI	GTAC	5 cut(s)	607, 2367, 2535, 2837, 3242
AflIII	ACRYGT	1 cut(s)	2300
AjnI	CCWGG	5 cut(s)	1679, 2175, 2350, 2709, 2777
AjuI	GAANNNNNNNTTGG	2 cut(s)	2211, 2243
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
Alw21I	GWGCWC	4 cut(s)	211, 1599, 2121, 2764
Alw44I	GTGCAC	1 cut(s)	2760
AlwI	GGATC	5 cut(s)	789, 1501, 1965, 2583, 3147
AlwNI	CAGNNNCTG	2 cut(s)	997, 3056
Ama87I	CYCGRG	2 cut(s)	89, 410
Aor13HI	TCCGGA	2 cut(s)	1782, 2803
AoxI	GGCC	9 cut(s)	26, 104, 169, 293, 553, 688, 2215, 2444, 3228
ApaI	GGGCCC	1 cut(s)	108
ApaLI	GTGCAC	1 cut(s)	2760
ApoI	RAATTY	6 cut(s)	1429, 1731, 1814, 2272, 2598, 2798
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AseI	ATTAAT	1 cut(s)	1103
Asp700I	GAANNNNTTC	2 cut(s)	1663, 2276
Asp718I	GGTACC	1 cut(s)	3240
AspLEI	GCGC	4 cut(s)	8, 1951, 2962, 3111
AspS9I	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
AsuC2I	CCSGG	5 cut(s)	292, 340, 395, 2467, 2695
AsuII	TTCGAA	1 cut(s)	2230
AvaI	CYCGRG	2 cut(s)	89, 410
AvaII	GGWCC	4 cut(s)	301, 436, 581, 1169
BaeGI	GKGCMC	2 cut(s)	108, 2764
BalI	TGGCCA	2 cut(s)	690, 2217
BanI	GGYRCC	3 cut(s)	2145, 2642, 3240
BanII	GRGCYC	3 cut(s)	108, 211, 1599
BarI	GAAGNNNNNNTAC	2 cut(s)	3051, 3083
BbsI	GAAGAC	3 cut(s)	232, 639, 2336
Bbv12I	GWGCWC	4 cut(s)	211, 1599, 2121, 2764
BbvCI	CCTCAGC	1 cut(s)	3232
BciT130I	CCWGG	5 cut(s)	1681, 2177, 2352, 2711, 2779
BcnI	CCSGG	5 cut(s)	292, 340, 395, 2467, 2695
BfaI	CTAG	5 cut(s)	1533, 1910, 2006, 2393, 2663
BfmI	CTRYAG	4 cut(s)	924, 998, 3104, 3167
BfuAI	ACCTGC	2 cut(s)	728, 2733
BglI	GCCNNNNNGGC	1 cut(s)	415
Bme18I	GGWCC	4 cut(s)	301, 436, 581, 1169
BmeT110I	CYCGRG	2 cut(s)	89, 410
BmgT120I	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
BmiI	GGNNCC	9 cut(s)	105, 106, 303, 437, 1170, 2082, 2147, 2644, 3242
BmsI	GCATC	5 cut(s)	183, 993, 1962, 2088, 2275
BpiI	GAAGAC	3 cut(s)	232, 639, 2336
BplI	GAGNNNNNCTC	2 cut(s)	1055, 1087
BpmI	CTGGAG	3 cut(s)	395, 2373, 2732
Bpu10I	CCTNAGC	3 cut(s)	1173, 3232, 3290
Bpu14I	TTCGAA	1 cut(s)	2230
BpuEI	CTTGAG	4 cut(s)	530, 992, 2390, 3143
BpuMI	CCSGG	5 cut(s)	292, 340, 395, 2467, 2695
BsaAI	YACGTR	1 cut(s)	1799
BsaBI	GATNNNNATC	3 cut(s)	615, 807, 2837
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	2 cut(s)	353, 2554
BsaJI	CCNNGG	6 cut(s)	160, 290, 2059, 2466, 2733, 3299
BsaWI	WCCGGW	2 cut(s)	1782, 2803
BsaXI	ACNNNNNCTCC	6 cut(s)	458, 488, 2521, 2551, 2714, 2744
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	7 cut(s)	155, 178, 1271, 1333, 2203, 2761, 3079
Bse3DI	GCAATG	2 cut(s)	1937, 2985
Bse8I	GATNNNNATC	3 cut(s)	615, 807, 2837
BseAI	TCCGGA	2 cut(s)	1782, 2803
BseBI	CCWGG	5 cut(s)	1681, 2177, 2352, 2711, 2779
BseDI	CCNNGG	6 cut(s)	160, 290, 2059, 2466, 2733, 3299
BseJI	GATNNNNATC	3 cut(s)	615, 807, 2837
BseMI	GCAATG	2 cut(s)	1937, 2985
BseMII	CTCAG	8 cut(s)	224, 663, 813, 920, 1164, 2898, 3246, 3281
BseNI	ACTGG	7 cut(s)	155, 178, 1271, 1333, 2203, 2761, 3079
BseRI	GAGGAG	5 cut(s)	68, 211, 214, 2411, 2514
BseSI	GKGCMC	2 cut(s)	108, 2764
BseX3I	CGGCCG	2 cut(s)	169, 293
BseYI	CCCAGC	1 cut(s)	708
BsgI	GTGCAG	7 cut(s)	40, 1067, 1548, 2538, 2640, 2711, 3114
Bsh1236I	CGCG	3 cut(s)	8, 162, 3111
Bsh1285I	CGRYCG	2 cut(s)	172, 296
BshFI	GGCC	9 cut(s)	28, 106, 171, 295, 555, 690, 2217, 2446, 3230
BshNI	GGYRCC	3 cut(s)	2145, 2642, 3240
BsiEI	CGRYCG	2 cut(s)	172, 296
BsiHKAI	GWGCWC	4 cut(s)	211, 1599, 2121, 2764
BsiHKCI	CYCGRG	2 cut(s)	89, 410
BsiSI	CCGG	9 cut(s)	292, 313, 339, 394, 439, 1783, 2466, 2695, 2804
BslFI	GGGAC	4 cut(s)	232, 2144, 2403, 3017
BsmBI	CGTCTC	2 cut(s)	668, 1088
BsmFI	GGGAC	4 cut(s)	232, 2144, 2403, 3017
BsmI	GAATGC	3 cut(s)	1724, 1839, 2465
BsnI	GGCC	9 cut(s)	28, 106, 171, 295, 555, 690, 2217, 2446, 3230
Bso31I	GGTCTC	2 cut(s)	353, 2554
BsoBI	CYCGRG	2 cut(s)	89, 410
Bsp119I	TTCGAA	1 cut(s)	2230
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	5 cut(s)	108, 211, 1599, 2121, 2764
Bsp13I	TCCGGA	2 cut(s)	1782, 2803
Bsp1407I	TGTACA	1 cut(s)	2835
Bsp143I	GATC	9 cut(s)	610, 781, 937, 1424, 1506, 1957, 2473, 2575, 3139
Bsp19I	CCATGG	2 cut(s)	2733, 3299
BspANI	GGCC	9 cut(s)	28, 106, 171, 295, 555, 690, 2217, 2446, 3230
BspCNI	CTCAG	8 cut(s)	223, 664, 814, 919, 1165, 2897, 3245, 3282
BspEI	TCCGGA	2 cut(s)	1782, 2803
BspFNI	CGCG	3 cut(s)	8, 162, 3111
BspHI	TCATGA	1 cut(s)	3033
BspLI	GGNNCC	9 cut(s)	105, 106, 303, 437, 1170, 2082, 2147, 2644, 3242
BspMAI	CTGCAG	3 cut(s)	928, 1002, 3108
BspMI	ACCTGC	2 cut(s)	728, 2733
BspPI	GGATC	5 cut(s)	789, 1501, 1965, 2583, 3147
BspT104I	TTCGAA	1 cut(s)	2230
BspT107I	GGYRCC	3 cut(s)	2145, 2642, 3240
BspTNI	GGTCTC	2 cut(s)	353, 2554
BsrDI	GCAATG	2 cut(s)	1937, 2985
BsrFI	RCCGGY	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	2835
BsrI	ACTGG	7 cut(s)	155, 178, 1271, 1333, 2203, 2761, 3079
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	6 cut(s)	160, 290, 2059, 2466, 2733, 3299
BssMI	GATC	9 cut(s)	610, 781, 937, 1424, 1506, 1957, 2473, 2575, 3139
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	3 cut(s)	2059, 2733, 3299
Bst2UI	CCWGG	5 cut(s)	1681, 2177, 2352, 2711, 2779
Bst6I	CTCTTC	2 cut(s)	269, 1245
BstACI	GRCGYC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	2000
BstAUI	TGTACA	1 cut(s)	2835
BstBAI	YACGTR	1 cut(s)	1799
BstBI	TTCGAA	1 cut(s)	2230
BstC8I	GCNNGC	4 cut(s)	136, 336, 371, 1265
BstDSI	CCRYGG	3 cut(s)	160, 2733, 3299
BstEII	GGTNACC	1 cut(s)	3077
BstENI	CCTNNNNNAGG	1 cut(s)	3170
BstFNI	CGCG	3 cut(s)	8, 162, 3111
BstHHI	GCGC	4 cut(s)	8, 1951, 2962, 3111
BstKTI	GATC	9 cut(s)	613, 784, 940, 1427, 1509, 1960, 2476, 2578, 3142
BstMBI	GATC	9 cut(s)	610, 781, 937, 1424, 1506, 1957, 2473, 2575, 3139
BstMCI	CGRYCG	2 cut(s)	172, 296
BstNI	CCWGG	5 cut(s)	1681, 2177, 2352, 2711, 2779
BstNSI	RCATGY	1 cut(s)	2304
BstPI	GGTNACC	1 cut(s)	3077
BstSFI	CTRYAG	4 cut(s)	924, 998, 3104, 3167
BstSLI	GKGCMC	2 cut(s)	108, 2764
BstSNI	TACGTA	1 cut(s)	1799
BstUI	CGCG	3 cut(s)	8, 162, 3111
BstV2I	GAAGAC	3 cut(s)	232, 639, 2336
BstX2I	RGATCY	3 cut(s)	781, 1506, 1957
BstYI	RGATCY	3 cut(s)	781, 1506, 1957
BstZI	CGGCCG	2 cut(s)	169, 293
BsuRI	GGCC	9 cut(s)	28, 106, 171, 295, 555, 690, 2217, 2446, 3230
BtgI	CCRYGG	3 cut(s)	160, 2733, 3299
BtsI	GCAGTG	2 cut(s)	972, 1519
BtsIMutI	CAGTG	4 cut(s)	972, 1465, 1519, 2892
BveI	ACCTGC	2 cut(s)	728, 2733
Cac8I	GCNNGC	4 cut(s)	136, 336, 371, 1265
CaiI	CAGNNNCTG	2 cut(s)	997, 3056
CciI	TCATGA	1 cut(s)	3033
CfoI	GCGC	4 cut(s)	8, 1951, 2962, 3111
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
Cfr42I	CCGCGG	1 cut(s)	163
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	5 cut(s)	606, 2366, 2534, 2836, 3241
CspCI	CAANNNNNGTGG	2 cut(s)	1276, 1311
CviQI	GTAC	5 cut(s)	606, 2366, 2534, 2836, 3241
DpnI	GATC	9 cut(s)	612, 783, 939, 1426, 1508, 1959, 2475, 2577, 3141
DpnII	GATC	9 cut(s)	610, 781, 937, 1424, 1506, 1957, 2473, 2575, 3139
DraI	TTTAAA	3 cut(s)	2136, 2208, 2787
DraIII	CACNNNGTG	1 cut(s)	2584
DrdI	GACNNNNNNGTC	1 cut(s)	3320
DseDI	GACNNNNNNGTC	1 cut(s)	3320
EaeI	YGGCCR	4 cut(s)	169, 293, 688, 2215
EagI	CGGCCG	2 cut(s)	169, 293
Eam1104I	CTCTTC	2 cut(s)	269, 1245
EarI	CTCTTC	2 cut(s)	269, 1245
EciI	GGCGGA	3 cut(s)	29, 35, 248
Ecl136II	GAGCTC	2 cut(s)	209, 1597
EclXI	CGGCCG	2 cut(s)	169, 293
Eco105I	TACGTA	1 cut(s)	1799
Eco130I	CCWWGG	3 cut(s)	2059, 2733, 3299
Eco147I	AGGCCT	2 cut(s)	28, 2446
Eco24I	GRGCYC	3 cut(s)	108, 211, 1599
Eco31I	GGTCTC	2 cut(s)	353, 2554
Eco47I	GGWCC	4 cut(s)	301, 436, 581, 1169
Eco52I	CGGCCG	2 cut(s)	169, 293
Eco53kI	GAGCTC	2 cut(s)	209, 1597
Eco57I	CTGAAG	3 cut(s)	974, 1206, 3078
Eco88I	CYCGRG	2 cut(s)	89, 410
Eco91I	GGTNACC	1 cut(s)	3077
EcoICRI	GAGCTC	2 cut(s)	209, 1597
EcoNI	CCTNNNNNAGG	1 cut(s)	3170
EcoO109I	RGGNCCY	3 cut(s)	104, 581, 1169
EcoO65I	GGTNACC	1 cut(s)	3077
EcoRII	CCWGG	5 cut(s)	1679, 2175, 2350, 2709, 2777
EcoT14I	CCWWGG	3 cut(s)	2059, 2733, 3299
EcoT38I	GRGCYC	3 cut(s)	108, 211, 1599
ErhI	CCWWGG	3 cut(s)	2059, 2733, 3299
Esp3I	CGTCTC	2 cut(s)	668, 1088
FalI	AAGNNNNNCTT	4 cut(s)	620, 652, 1652, 1684
FaqI	GGGAC	4 cut(s)	232, 2144, 2403, 3017
FauI	CCCGC	4 cut(s)	167, 414, 435, 506
FauNDI	CATATG	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	1904
FriOI	GRGCYC	3 cut(s)	108, 211, 1599
FspBI	CTAG	5 cut(s)	1533, 1910, 2006, 2393, 2663
GlaI	GCGC	4 cut(s)	7, 1950, 2961, 3110
GsaI	CCCAGC	1 cut(s)	712
GsuI	CTGGAG	3 cut(s)	395, 2373, 2732
HaeIII	GGCC	9 cut(s)	28, 106, 171, 295, 555, 690, 2217, 2446, 3230
HapII	CCGG	9 cut(s)	292, 313, 339, 394, 439, 1783, 2466, 2695, 2804
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	4 cut(s)	8, 1951, 2962, 3111
Hin1I	GRCGYC	1 cut(s)	390
Hin6I	GCGC	4 cut(s)	6, 1949, 2960, 3109
HinP1I	GCGC	4 cut(s)	6, 1949, 2960, 3109
HincII	GTYRAC	4 cut(s)	352, 1418, 2743, 3325
HindII	GTYRAC	4 cut(s)	352, 1418, 2743, 3325
HindIII	AAGCTT	1 cut(s)	1265
HpaII	CCGG	9 cut(s)	292, 313, 339, 394, 439, 1783, 2466, 2695, 2804
Hpy99I	CGWCG	2 cut(s)	323, 359
HpyAV	CCTTC	6 cut(s)	94, 1728, 1962, 2311, 3130, 3166
HpyCH4IV	ACGT	3 cut(s)	1081, 1116, 1798
HpySE526I	ACGT	3 cut(s)	1081, 1116, 1798
Hsp92I	GRCGYC	1 cut(s)	390
HspAI	GCGC	4 cut(s)	6, 1949, 2960, 3109
Kpn2I	TCCGGA	2 cut(s)	1782, 2803
KpnI	GGTACC	1 cut(s)	3244
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	9 cut(s)	610, 781, 937, 1424, 1506, 1957, 2473, 2575, 3139
LmnI	GCTCC	6 cut(s)	1108, 1260, 1594, 2061, 2468, 2950
LweI	GCATC	5 cut(s)	183, 993, 1962, 2088, 2275
MaeI	CTAG	5 cut(s)	1533, 1910, 2006, 2393, 2663
MaeII	ACGT	3 cut(s)	1081, 1116, 1798
MalI	GATC	9 cut(s)	612, 783, 939, 1426, 1508, 1959, 2475, 2577, 3141
MboI	GATC	9 cut(s)	610, 781, 937, 1424, 1506, 1957, 2473, 2575, 3139
MfeI	CAATTG	1 cut(s)	1952
MflI	RGATCY	3 cut(s)	781, 1506, 1957
MhlI	GDGCHC	5 cut(s)	108, 211, 1599, 2121, 2764
MlsI	TGGCCA	2 cut(s)	690, 2217
MluNI	TGGCCA	2 cut(s)	690, 2217
MlyI	GAGTC	9 cut(s)	48, 101, 104, 386, 500, 1423, 1829, 2981, 3004
Mox20I	TGGCCA	2 cut(s)	690, 2217
MroI	TCCGGA	2 cut(s)	1782, 2803
MroXI	GAANNNNTTC	2 cut(s)	1663, 2276
MscI	TGGCCA	2 cut(s)	690, 2217
MseI	TTAA	8 cut(s)	525, 888, 1103, 1839, 2046, 2135, 2207, 2786
MslI	CAYNNNNRTG	2 cut(s)	368, 2454
Msp20I	TGGCCA	2 cut(s)	690, 2217
MspA1I	CMGCKG	7 cut(s)	162, 230, 298, 929, 1342, 2768, 3201
MspI	CCGG	9 cut(s)	292, 313, 339, 394, 439, 1783, 2466, 2695, 2804
MssI	GTTTAAAC	1 cut(s)	2208
MunI	CAATTG	1 cut(s)	1952
Mva1269I	GAATGC	3 cut(s)	1724, 1839, 2465
MvaI	CCWGG	5 cut(s)	1681, 2177, 2352, 2711, 2779
MvnI	CGCG	3 cut(s)	8, 162, 3111
NciI	CCSGG	5 cut(s)	292, 340, 395, 2467, 2695
NcoI	CCATGG	2 cut(s)	2733, 3299
NdeI	CATATG	1 cut(s)	1036
NdeII	GATC	9 cut(s)	610, 781, 937, 1424, 1506, 1957, 2473, 2575, 3139
NlaIV	GGNNCC	9 cut(s)	105, 106, 303, 437, 1170, 2082, 2147, 2644, 3242
NmeAIII	GCCGAG	1 cut(s)	1388
NmuCI	GTSAC	8 cut(s)	40, 449, 1843, 2326, 2584, 2996, 3153, 3247
NspI	RCATGY	1 cut(s)	2304
NspV	TTCGAA	1 cut(s)	2230
PaeR7I	CTCGAG	1 cut(s)	89
PagI	TCATGA	1 cut(s)	3033
PceI	AGGCCT	2 cut(s)	28, 2446
PciI	ACATGT	1 cut(s)	2300
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 354
PctI	GAATGC	3 cut(s)	1724, 1839, 2465
PdmI	GAANNNNTTC	2 cut(s)	1663, 2276
PfeI	GAWTC	8 cut(s)	715, 854, 874, 1708, 1879, 2027, 2172, 3144
PflFI	GACNNNGTC	2 cut(s)	236, 679
PflMI	CCANNNNNTGG	1 cut(s)	2287
PfoI	TCCNGGA	2 cut(s)	2350, 2777
PleI	GAGTC	9 cut(s)	47, 100, 104, 385, 499, 1422, 1828, 2980, 3003
PmeI	GTTTAAAC	1 cut(s)	2208
PpsI	GAGTC	9 cut(s)	47, 100, 104, 385, 499, 1422, 1828, 2980, 3003
Ppu21I	YACGTR	1 cut(s)	1799
PpuMI	RGGWCCY	2 cut(s)	581, 1169
PscI	ACATGT	1 cut(s)	2300
PshBI	ATTAAT	1 cut(s)	1103
PsiI	TTATAA	2 cut(s)	1892, 2498
Psp124BI	GAGCTC	2 cut(s)	211, 1599
Psp1406I	AACGTT	1 cut(s)	1116
Psp5II	RGGWCCY	2 cut(s)	581, 1169
Psp6I	CCWGG	5 cut(s)	1679, 2175, 2350, 2709, 2777
PspEI	GGTNACC	1 cut(s)	3077
PspFI	CCCAGC	1 cut(s)	708
PspGI	CCWGG	5 cut(s)	1679, 2175, 2350, 2709, 2777
PspN4I	GGNNCC	9 cut(s)	105, 106, 303, 437, 1170, 2082, 2147, 2644, 3242
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
PspPPI	RGGWCCY	2 cut(s)	581, 1169
PspXI	VCTCGAGB	1 cut(s)	89
PstI	CTGCAG	3 cut(s)	928, 1002, 3108
PstNI	CAGNNNCTG	2 cut(s)	997, 3056
PsuI	RGATCY	3 cut(s)	781, 1506, 1957
PsyI	GACNNNGTC	2 cut(s)	236, 679
PvuII	CAGCTG	2 cut(s)	2768, 3201
RsaI	GTAC	5 cut(s)	607, 2367, 2535, 2837, 3242
RsaNI	GTAC	5 cut(s)	606, 2366, 2534, 2836, 3241
RseI	CAYNNNNRTG	2 cut(s)	368, 2454
SacI	GAGCTC	2 cut(s)	211, 1599
SacII	CCGCGG	1 cut(s)	163
SaqAI	TTAA	8 cut(s)	525, 888, 1103, 1839, 2046, 2135, 2207, 2786
Sau3AI	GATC	9 cut(s)	610, 781, 937, 1424, 1506, 1957, 2473, 2575, 3139
Sau96I	GGNCC	7 cut(s)	104, 105, 301, 436, 554, 581, 1169
SchI	GAGTC	9 cut(s)	48, 101, 104, 386, 500, 1423, 1829, 2981, 3004
SduI	GDGCHC	5 cut(s)	108, 211, 1599, 2121, 2764
SfaNI	GCATC	5 cut(s)	183, 993, 1962, 2088, 2275
SfcI	CTRYAG	4 cut(s)	924, 998, 3104, 3167
Sfr274I	CTCGAG	1 cut(s)	89
Sfr303I	CCGCGG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	2230
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	4 cut(s)	301, 436, 581, 1169
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	368, 2454
SmlI	CTYRAG	5 cut(s)	89, 545, 1007, 2369, 3158
SmoI	CTYRAG	5 cut(s)	89, 545, 1007, 2369, 3158
SnaBI	TACGTA	1 cut(s)	1799
SseBI	AGGCCT	2 cut(s)	28, 2446
SspMI	CTAG	5 cut(s)	1533, 1910, 2006, 2393, 2663
SstI	GAGCTC	2 cut(s)	211, 1599
StuI	AGGCCT	2 cut(s)	28, 2446
StyI	CCWWGG	3 cut(s)	2059, 2733, 3299
TaiI	ACGT	3 cut(s)	1084, 1119, 1801
TatI	WGTACW	1 cut(s)	2835
TauI	GCSGC	7 cut(s)	11, 14, 165, 174, 298, 421, 2151
TfiI	GAWTC	8 cut(s)	715, 854, 874, 1708, 1879, 2027, 2172, 3144
Tru1I	TTAA	8 cut(s)	525, 888, 1103, 1839, 2046, 2135, 2207, 2786
Tru9I	TTAA	8 cut(s)	525, 888, 1103, 1839, 2046, 2135, 2207, 2786
TscAI	CASTG	4 cut(s)	979, 1465, 1519, 2892
TseFI	GTSAC	8 cut(s)	40, 449, 1843, 2326, 2584, 2996, 3153, 3247
Tsp45I	GTSAC	8 cut(s)	40, 449, 1843, 2326, 2584, 2996, 3153, 3247
TspGWI	ACGGA	3 cut(s)	677, 2496, 2572
TspRI	CASTG	4 cut(s)	979, 1465, 1519, 2892
Tth111I	GACNNNGTC	2 cut(s)	236, 679
Van91I	CCANNNNNTGG	1 cut(s)	2287
VneI	GTGCAC	1 cut(s)	2760
VpaK11BI	GGWCC	4 cut(s)	301, 436, 581, 1169
VspI	ATTAAT	1 cut(s)	1103
XagI	CCTNNNNNAGG	1 cut(s)	3170
XapI	RAATTY	6 cut(s)	1429, 1731, 1814, 2272, 2598, 2798
XceI	RCATGY	1 cut(s)	2304
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 1736
XhoI	CTCGAG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	1904
XmnI	GAANNNNTTC	2 cut(s)	1663, 2276
XspI	CTAG	5 cut(s)	1533, 1910, 2006, 2393, 2663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.