Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

11274099 .. 11280195

Gene Structure 6097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG139700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3387 bp

ATGGGCGCTGCGGCGGCGGCGGCGGCGGAGGCGGAGAGGCCCACTGTCCGAGTCACCAACATCCCCTGCACCATCACCGCCAACGACCTCCTCACCTTCCTCGAGTCCACTCTCGGCCCCGACTCCATCTTCGCCATCGAAATCGCCAGCGACCACAAGAACTGGAAATCCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTATCCCACAAAGCCAGAGCTCAGTCTCTCTCCTCCTCCGCCGACCTCGTCTTCAAGTCCCACAACCTCCGCCTCTTCGACACCAACGATGACATCATCCCCCGGCCGCTGGACCCCAAGCACCGGCTCGACGACACCCTTTTGCACGCCGGGTTTGTCGTCAACGACGAGACCATGAGCGTGCTGGAGTCGTGGGAGGGCGTCCGGGCTTGGGTCATGCCCGAGAGGCGGCGGGTCGAGTTTTGGGTCCGGCGGGGCGGTGACTGTTTCAAGATGGAGGTTGCGTTTGAGAATATCGTGGAGTCTGTTGAGTGCTGTTTGGGTGGGGATAAAGTTAATGCTCTGCTTTTGAAGCTCAAGTTTGGCCCGAAGATTTTTCGGAAAGTATCAGGACCTAATGTAGCTTCCAAGTTTAGTGCTGATCGGTATCACTTTTGCAAGGAAGACTTTGATTATCTGTGGGTGAGGACTACAGATTTTTCTGAGACAAAGTCGATTGGCCATTCGACTTCATTTTGCTGGGAGATTCAGGAGGACTTTTTGGTGGCGGGTGTTTTTATGAAGTTTCCGAGCTTTAGGAAAGATGTGGTGGATCTCATGTTTGAGGATGGTGATGGGTATCTTTCGGTTTCTGAGACAGTTCCGCTTGTGAAATGTGAAGCAGATTCAGAGTTACCTTATGAGATTCTTTTCCAGCTTAATGCACTTGTTCATGCTCAGAAGATTAGCCTTGCTGCAGCGGAGTGTGATCTGATTGAGTTCTTTGGTGGTTTGAGTATGGACACTGCTAATGTGCTTCTTCAGAAGCTGCAGAAGCTCAAGACCACTTGTTATGACCCTCTATCATATGCAAAGGTGCAGTTGCAACTCTTAGAGGGGAACTCTAAGAAACGTCTCTCCCCCCATCAAAGATTAATGGAGCATAACGTTATGAGTTGTCATAGAGCCTTGATTACCCCATCAAAGATTTACTGCTTGGGTCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCTCAATATGCTTCAGATTTTATGAGGGTTACATTTGTTGAAGAGGATTGGAGCAAGCTTCCAGTAAATGCTCTCTCCACAAGTATTGAACAAGGTTTCTTTGCAAAACCTTTTAGAACTGGAATATATCAGCGGATATTGTCTATTCTTCGAGATGGAATTGTGATTGGAGATAAAAGATTTGAGTTTCTGGCTTTCTCGGCGAGTCAACTCCGATCAAATTCTGTTTGGATGTTTGCTTCAAATGACAGTGTAAAGGCAGAAGATATTAGAGAATGGATGGGTTGCTTCCACAAGATCCGCAGTGTATCTAAATGTGCAGCTAGGATGGGTCAGCTATTCAGTTCTTCAACACAAACTCTTGTTGTCCCTCAACAGGATGTGGAGCTCATTCCTGACATTGAGACTTCTTCTGATGGTGTGAGTTACTGCTTCTCTGATGGTATTGGAAAGATTTCCTTATCTTTTGCCAGGCAAGTTGCTCAAAAGTGCGGACTGAATCACACTCCTTCGGCATTCCAAATTCGATATGGTGGATATAAAGGGGTGATAGCCATTGACCGTAATTCTTTCCGGAAGCTGTCTCTACGTAGCAGTATGCTCAAATTTGAGTCGAACAACAGAATGCTTAATGTCACTAAATGGAGTTCCTCCATGCCCTGCTTTCTGAATCGAGAAATTATAACCCTCATGTCTACGCTAGGGGTAGAGGATGAAGCATTTGAAGCATTGCAACAGGAGCAATTGGATCTGTTAGGAAGGATGCGGAAAGAAAGAAATGTAGCACTAACTGCCCTAGAGAAACTAAGCGGTGCTGATTCCAATAACATTCTTGTTAAGATGTTGCTCCAAGGTTATGAGCCTAATCTGGAACCTTATCTCTCAATGATGCTTCAAGCACACTATGAGCACCACTTGACTGATTTAAAGAGTAGGTGCCGCATATATGTCCCAAAAGGAAGAATCCTGGTTGGGTGCTTGGATGAAACTGGTAGTTTAAACTATGGCCAAGTTTATGTTCGAATAACCATGACCAAAGCAGAGCAAGAAATGGGGCATCAGAATTTCTTCCAGAGGGTGGATGAGGCAACATGTATAGTAACAGGGAAGGTGGTTGTCACCAAAAATCCTTGTCTTCATCCTGGAGACGTCAGGGTACTTGAGGCTGTCTATGATGTGGGACTAGAGGAGAAGAATATGGTGGATTGCCTTGTATTTCCCCAGAAAGGAGAAAGGCCTCATCCAAATGAATGCTCCGGGGGTGATCTGGACGGAGATTTGTTTTTTATAAGTTGGGATAAAAGTCTTGTTCCTCCTCATACTGTACCTCCGATGGACTACTCTGCACGGAGACCTCGCAATATGGATCACGATGTGACTTTAGAGGAAATTCAAAAGTTCTTTGTGGATTACATGATAAATGATAATTTGGGTGCCATCTCTACTGCACATCTAGTTCATTCTGACCACGAACCAGAAAAAGCCCGGAGTAAAAAATGCCTGGAGTTGGCAGACCTGCACTCCATGGCTGTTGACTTTGCCAAAACTGGTGCACCAGCTGAAATGTCCTGGATTTTAAAACCAAGAGAATTTCCGGATTTCATGGAAAGGGTGGACAAACCGATGTACATCTCCGATGGGGCATTAGGAAAGCTATACCGTGCAATTCTTAGCTCAGTGGTTCAAGAACAAACAACTGTTGTCTGGTCAAAGCAGATGGCTCAAGCAGCTTATGACAGGGAGCTTGAAGCGCAAGGTTTCGAGTCCTTTCTTGACATTGCAGAGAGTCACAGGGACACATACATGGAGAAGATGGGAAGTCTCATGAACTATTATGAAGCAGCGACTGAAGATGAAATACTGACTGGTAACCTCCGAAACCGTGCAGCCTATCTGCAGCGCGATAACAGGAGATATTTTGACTTGAAGGATCGAATCTTGCTGTCACTCAAGACCCTACAGAAGGAAGCAAAAGGATGGTTCGAAAGCAGCTGCAAGGTGAGTGAGCAGCAGCAGTTGGCCTCGGCATGGTACCATGTGACTTACAACTCATCTTATTTCCAGGAAGACATGAACTGCCTGAGCTTTCCATGGATTGTGGGCGACATTCTGCTTAACATCAAGTCTCTGAATAGCCGAAGAAACCGCACGGTTACAAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1128

Amino Acids

128.05

Weight (kDa)

6.0

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	15 - 98	6e-28	RdRP1/2, RRM domain
PH_RDR2	PF24823	115 - 266	2.4e-62	RDR2 PH-like domain
RdRP_helical	PF26252	282 - 367	9e-14	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	385 - 963	1.4e-191	RNA dependent RNA polymerase
RdRP_head	PF26253	984 - 1123	9.8e-40	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1904, 2510
AatII	GACGTC	1 cut(s)	2373
Acc36I	ACCTGC	1 cut(s)	2745
Acc65I	GGTACC	1 cut(s)	3252
AccB1I	GGYRCC	3 cut(s)	2157, 2654, 3252
AccB7I	CCANNNNNTGG	1 cut(s)	2299
AccI	GTMKAC	1 cut(s)	1916
AccII	CGCG	2 cut(s)	174, 3123
AccIII	TCCGGA	2 cut(s)	1794, 2815
AclI	AACGTT	1 cut(s)	1128
AclWI	GGATC	5 cut(s)	801, 1513, 1977, 2595, 3159
AcoI	YGGCCR	4 cut(s)	181, 305, 700, 2227
AcsI	RAATTY	6 cut(s)	1441, 1743, 1826, 2284, 2610, 2810
AcuI	CTGAAG	3 cut(s)	986, 1218, 3090
AcyI	GRCGYC	2 cut(s)	402, 2370
AdeI	CACNNNGTG	1 cut(s)	2596
AfaI	GTAC	4 cut(s)	2379, 2547, 2849, 3254
AflIII	ACRYGT	1 cut(s)	2312
AjnI	CCWGG	6 cut(s)	1691, 2187, 2362, 2721, 2789, 3282
AjuI	GAANNNNNNNTTGG	2 cut(s)	2223, 2255
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
Alw21I	GWGCWC	4 cut(s)	223, 1611, 2133, 2776
Alw44I	GTGCAC	1 cut(s)	2772
AlwI	GGATC	5 cut(s)	801, 1513, 1977, 2595, 3159
AlwNI	CAGNNNCTG	2 cut(s)	1009, 3068
Ama87I	CYCGRG	2 cut(s)	101, 422
Aor13HI	TCCGGA	2 cut(s)	1794, 2815
AoxI	GGCC	9 cut(s)	38, 115, 181, 305, 565, 700, 2227, 2456, 3240
ApaLI	GTGCAC	1 cut(s)	2772
ApoI	RAATTY	6 cut(s)	1441, 1743, 1826, 2284, 2610, 2810
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AseI	ATTAAT	1 cut(s)	1115
Asp700I	GAANNNNTTC	2 cut(s)	1675, 2288
Asp718I	GGTACC	1 cut(s)	3252
AspLEI	GCGC	3 cut(s)	8, 2974, 3123
AspS9I	GGNCC	7 cut(s)	39, 116, 313, 448, 566, 593, 1181
AsuC2I	CCSGG	5 cut(s)	304, 352, 407, 2479, 2707
AsuII	TTCGAA	2 cut(s)	2242, 3204
AvaI	CYCGRG	2 cut(s)	101, 422
AvaII	GGWCC	4 cut(s)	313, 448, 593, 1181
BaeGI	GKGCMC	1 cut(s)	2776
BalI	TGGCCA	2 cut(s)	702, 2229
BanI	GGYRCC	3 cut(s)	2157, 2654, 3252
BanII	GRGCYC	2 cut(s)	223, 1611
BarI	GAAGNNNNNNTAC	2 cut(s)	3063, 3095
BbsI	GAAGAC	4 cut(s)	244, 651, 2348, 3294
Bbv12I	GWGCWC	4 cut(s)	223, 1611, 2133, 2776
BciT130I	CCWGG	6 cut(s)	1693, 2189, 2364, 2723, 2791, 3284
BcnI	CCSGG	5 cut(s)	304, 352, 407, 2479, 2707
BfaI	CTAG	5 cut(s)	1545, 1922, 2018, 2405, 2675
BfmI	CTRYAG	5 cut(s)	672, 936, 1010, 3116, 3179
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	2745
BglI	GCCNNNNNGGC	1 cut(s)	427
Bme18I	GGWCC	4 cut(s)	313, 448, 593, 1181
BmeT110I	CYCGRG	2 cut(s)	101, 422
BmgT120I	GGNCC	7 cut(s)	39, 116, 313, 448, 566, 593, 1181
BmiI	GGNNCC	8 cut(s)	118, 315, 449, 1182, 2094, 2159, 2656, 3254
BmsI	GCATC	4 cut(s)	195, 1974, 2100, 2287
BpiI	GAAGAC	4 cut(s)	244, 651, 2348, 3294
BplI	GAGNNNNNCTC	2 cut(s)	1067, 1099
BpmI	CTGGAG	3 cut(s)	407, 2385, 2744
Bpu10I	CCTNAGC	2 cut(s)	1185, 3302
Bpu14I	TTCGAA	2 cut(s)	2242, 3204
BpuEI	CTTGAG	5 cut(s)	542, 1004, 2402, 2928, 3155
BpuMI	CCSGG	5 cut(s)	304, 352, 407, 2479, 2707
BsaAI	YACGTR	1 cut(s)	1811
BsaBI	GATNNNNATC	3 cut(s)	627, 819, 2849
BsaHI	GRCGYC	2 cut(s)	402, 2370
BsaI	GGTCTC	2 cut(s)	365, 2566
BsaJI	CCNNGG	7 cut(s)	172, 302, 2071, 2478, 2745, 3243, 3311
BsaWI	WCCGGW	2 cut(s)	1794, 2815
BsaXI	ACNNNNNCTCC	6 cut(s)	470, 500, 2533, 2563, 2726, 2756
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	7 cut(s)	167, 190, 1283, 1345, 2215, 2773, 3091
Bse3DI	GCAATG	2 cut(s)	1949, 2997
Bse8I	GATNNNNATC	3 cut(s)	627, 819, 2849
BseAI	TCCGGA	2 cut(s)	1794, 2815
BseBI	CCWGG	6 cut(s)	1693, 2189, 2364, 2723, 2791, 3284
BseDI	CCNNGG	7 cut(s)	172, 302, 2071, 2478, 2745, 3243, 3311
BseJI	GATNNNNATC	3 cut(s)	627, 819, 2849
BseMI	GCAATG	2 cut(s)	1949, 2997
BseMII	CTCAG	7 cut(s)	236, 675, 825, 932, 1176, 2910, 3293
BseNI	ACTGG	7 cut(s)	167, 190, 1283, 1345, 2215, 2773, 3091
BseRI	GAGGAG	5 cut(s)	80, 223, 226, 2423, 2526
BseSI	GKGCMC	1 cut(s)	2776
BseX3I	CGGCCG	2 cut(s)	181, 305
BseYI	CCCAGC	1 cut(s)	720
BsgI	GTGCAG	7 cut(s)	52, 1079, 1560, 2550, 2652, 2723, 3126
Bsh1236I	CGCG	2 cut(s)	174, 3123
Bsh1285I	CGRYCG	2 cut(s)	184, 308
BshFI	GGCC	9 cut(s)	40, 117, 183, 307, 567, 702, 2229, 2458, 3242
BshNI	GGYRCC	3 cut(s)	2157, 2654, 3252
BsiEI	CGRYCG	2 cut(s)	184, 308
BsiHKAI	GWGCWC	4 cut(s)	223, 1611, 2133, 2776
BsiHKCI	CYCGRG	2 cut(s)	101, 422
BsiSI	CCGG	9 cut(s)	304, 325, 351, 406, 451, 1795, 2478, 2707, 2816
BslFI	GGGAC	5 cut(s)	244, 1574, 2156, 2415, 3029
BsmBI	CGTCTC	2 cut(s)	1100, 2361
BsmFI	GGGAC	5 cut(s)	244, 1574, 2156, 2415, 3029
BsmI	GAATGC	3 cut(s)	1736, 1851, 2477
BsnI	GGCC	9 cut(s)	40, 117, 183, 307, 567, 702, 2229, 2458, 3242
Bso31I	GGTCTC	2 cut(s)	365, 2566
BsoBI	CYCGRG	2 cut(s)	101, 422
Bsp119I	TTCGAA	2 cut(s)	2242, 3204
Bsp1286I	GDGCHC	4 cut(s)	223, 1611, 2133, 2776
Bsp13I	TCCGGA	2 cut(s)	1794, 2815
Bsp1407I	TGTACA	1 cut(s)	2847
Bsp143I	GATC	9 cut(s)	622, 793, 949, 1436, 1518, 1969, 2485, 2587, 3151
Bsp19I	CCATGG	2 cut(s)	2745, 3311
BspANI	GGCC	9 cut(s)	40, 117, 183, 307, 567, 702, 2229, 2458, 3242
BspCNI	CTCAG	7 cut(s)	235, 676, 826, 931, 1177, 2909, 3294
BspEI	TCCGGA	2 cut(s)	1794, 2815
BspFNI	CGCG	2 cut(s)	174, 3123
BspHI	TCATGA	1 cut(s)	3045
BspLI	GGNNCC	8 cut(s)	118, 315, 449, 1182, 2094, 2159, 2656, 3254
BspMAI	CTGCAG	3 cut(s)	940, 1014, 3120
BspMI	ACCTGC	1 cut(s)	2745
BspPI	GGATC	5 cut(s)	801, 1513, 1977, 2595, 3159
BspT104I	TTCGAA	2 cut(s)	2242, 3204
BspT107I	GGYRCC	3 cut(s)	2157, 2654, 3252
BspTNI	GGTCTC	2 cut(s)	365, 2566
BsrDI	GCAATG	2 cut(s)	1949, 2997
BsrFI	RCCGGY	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	2847
BsrI	ACTGG	7 cut(s)	167, 190, 1283, 1345, 2215, 2773, 3091
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	7 cut(s)	172, 302, 2071, 2478, 2745, 3243, 3311
BssMI	GATC	9 cut(s)	622, 793, 949, 1436, 1518, 1969, 2485, 2587, 3151
BssNI	GRCGYC	2 cut(s)	402, 2370
BssT1I	CCWWGG	3 cut(s)	2071, 2745, 3311
Bst2UI	CCWGG	6 cut(s)	1693, 2189, 2364, 2723, 2791, 3284
Bst6I	CTCTTC	2 cut(s)	281, 1257
BstACI	GRCGYC	2 cut(s)	402, 2370
BstAPI	GCANNNNNTGC	1 cut(s)	2012
BstAUI	TGTACA	1 cut(s)	2847
BstBAI	YACGTR	1 cut(s)	1811
BstBI	TTCGAA	2 cut(s)	2242, 3204
BstC8I	GCNNGC	4 cut(s)	148, 348, 383, 1277
BstDSI	CCRYGG	3 cut(s)	172, 2745, 3311
BstEII	GGTNACC	1 cut(s)	3089
BstENI	CCTNNNNNAGG	1 cut(s)	3182
BstFNI	CGCG	2 cut(s)	174, 3123
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	3 cut(s)	8, 2974, 3123
BstKTI	GATC	9 cut(s)	625, 796, 952, 1439, 1521, 1972, 2488, 2590, 3154
BstMBI	GATC	9 cut(s)	622, 793, 949, 1436, 1518, 1969, 2485, 2587, 3151
BstMCI	CGRYCG	2 cut(s)	184, 308
BstNI	CCWGG	6 cut(s)	1693, 2189, 2364, 2723, 2791, 3284
BstNSI	RCATGY	1 cut(s)	2316
BstPI	GGTNACC	1 cut(s)	3089
BstSFI	CTRYAG	5 cut(s)	672, 936, 1010, 3116, 3179
BstSLI	GKGCMC	1 cut(s)	2776
BstSNI	TACGTA	1 cut(s)	1811
BstUI	CGCG	2 cut(s)	174, 3123
BstV2I	GAAGAC	4 cut(s)	244, 651, 2348, 3294
BstX2I	RGATCY	3 cut(s)	793, 1518, 1969
BstYI	RGATCY	3 cut(s)	793, 1518, 1969
BstZI	CGGCCG	2 cut(s)	181, 305
BsuRI	GGCC	9 cut(s)	40, 117, 183, 307, 567, 702, 2229, 2458, 3242
BtgI	CCRYGG	3 cut(s)	172, 2745, 3311
BtsI	GCAGTG	2 cut(s)	984, 1531
BtsIMutI	CAGTG	5 cut(s)	42, 984, 1477, 1531, 2904
BveI	ACCTGC	1 cut(s)	2745
Cac8I	GCNNGC	4 cut(s)	148, 348, 383, 1277
CaiI	CAGNNNCTG	2 cut(s)	1009, 3068
CciI	TCATGA	1 cut(s)	3045
CfoI	GCGC	3 cut(s)	8, 2974, 3123
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	7 cut(s)	39, 116, 313, 448, 566, 593, 1181
Cfr42I	CCGCGG	1 cut(s)	175
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	4 cut(s)	2378, 2546, 2848, 3253
CspCI	CAANNNNNGTGG	2 cut(s)	1288, 1323
CviQI	GTAC	4 cut(s)	2378, 2546, 2848, 3253
DpnI	GATC	9 cut(s)	624, 795, 951, 1438, 1520, 1971, 2487, 2589, 3153
DpnII	GATC	9 cut(s)	622, 793, 949, 1436, 1518, 1969, 2485, 2587, 3151
DraI	TTTAAA	3 cut(s)	2148, 2220, 2799
DraIII	CACNNNGTG	1 cut(s)	2596
EaeI	YGGCCR	4 cut(s)	181, 305, 700, 2227
EagI	CGGCCG	2 cut(s)	181, 305
Eam1104I	CTCTTC	2 cut(s)	281, 1257
EarI	CTCTTC	2 cut(s)	281, 1257
EciI	GGCGGA	4 cut(s)	41, 47, 229, 260
Ecl136II	GAGCTC	2 cut(s)	221, 1609
EclXI	CGGCCG	2 cut(s)	181, 305
Eco105I	TACGTA	1 cut(s)	1811
Eco130I	CCWWGG	3 cut(s)	2071, 2745, 3311
Eco147I	AGGCCT	1 cut(s)	2458
Eco24I	GRGCYC	2 cut(s)	223, 1611
Eco31I	GGTCTC	2 cut(s)	365, 2566
Eco47I	GGWCC	4 cut(s)	313, 448, 593, 1181
Eco52I	CGGCCG	2 cut(s)	181, 305
Eco53kI	GAGCTC	2 cut(s)	221, 1609
Eco57I	CTGAAG	3 cut(s)	986, 1218, 3090
Eco88I	CYCGRG	2 cut(s)	101, 422
Eco91I	GGTNACC	1 cut(s)	3089
EcoICRI	GAGCTC	2 cut(s)	221, 1609
EcoNI	CCTNNNNNAGG	1 cut(s)	3182
EcoO109I	RGGNCCY	2 cut(s)	593, 1181
EcoO65I	GGTNACC	1 cut(s)	3089
EcoRII	CCWGG	6 cut(s)	1691, 2187, 2362, 2721, 2789, 3282
EcoT14I	CCWWGG	3 cut(s)	2071, 2745, 3311
EcoT38I	GRGCYC	2 cut(s)	223, 1611
ErhI	CCWWGG	3 cut(s)	2071, 2745, 3311
Esp3I	CGTCTC	2 cut(s)	1100, 2361
FalI	AAGNNNNNCTT	4 cut(s)	632, 664, 1664, 1696
FaqI	GGGAC	5 cut(s)	244, 1574, 2156, 2415, 3029
FauI	CCCGC	4 cut(s)	179, 426, 447, 742
FauNDI	CATATG	1 cut(s)	1048
FblI	GTMKAC	1 cut(s)	1916
FriOI	GRGCYC	2 cut(s)	223, 1611
FspBI	CTAG	5 cut(s)	1545, 1922, 2018, 2405, 2675
GlaI	GCGC	3 cut(s)	7, 2973, 3122
GsaI	CCCAGC	1 cut(s)	724
GsuI	CTGGAG	3 cut(s)	407, 2385, 2744
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	9 cut(s)	40, 117, 183, 307, 567, 702, 2229, 2458, 3242
HapII	CCGG	9 cut(s)	304, 325, 351, 406, 451, 1795, 2478, 2707, 2816
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	3 cut(s)	8, 2974, 3123
Hin1I	GRCGYC	2 cut(s)	402, 2370
Hin6I	GCGC	3 cut(s)	6, 2972, 3121
HinP1I	GCGC	3 cut(s)	6, 2972, 3121
HincII	GTYRAC	3 cut(s)	364, 1430, 2755
HindII	GTYRAC	3 cut(s)	364, 1430, 2755
HindIII	AAGCTT	1 cut(s)	1277
HpaII	CCGG	9 cut(s)	304, 325, 351, 406, 451, 1795, 2478, 2707, 2816
Hpy166II	GTNNAC	8 cut(s)	108, 195, 364, 1430, 1917, 2755, 2774, 2836
Hpy8I	GTNNAC	8 cut(s)	108, 195, 364, 1430, 1917, 2755, 2774, 2836
Hpy99I	CGWCG	2 cut(s)	335, 371
HpyAV	CCTTC	6 cut(s)	106, 1740, 1974, 2323, 3142, 3178
HpyCH4IV	ACGT	4 cut(s)	1093, 1128, 1810, 2370
HpySE526I	ACGT	4 cut(s)	1093, 1128, 1810, 2370
Hsp92I	GRCGYC	2 cut(s)	402, 2370
HspAI	GCGC	3 cut(s)	6, 2972, 3121
Kpn2I	TCCGGA	2 cut(s)	1794, 2815
KpnI	GGTACC	1 cut(s)	3256
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	9 cut(s)	622, 793, 949, 1436, 1518, 1969, 2485, 2587, 3151
LmnI	GCTCC	7 cut(s)	1120, 1272, 1606, 1960, 2073, 2480, 2962
LweI	GCATC	4 cut(s)	195, 1974, 2100, 2287
MaeI	CTAG	5 cut(s)	1545, 1922, 2018, 2405, 2675
MaeII	ACGT	4 cut(s)	1093, 1128, 1810, 2370
MalI	GATC	9 cut(s)	624, 795, 951, 1438, 1520, 1971, 2487, 2589, 3153
MboI	GATC	9 cut(s)	622, 793, 949, 1436, 1518, 1969, 2485, 2587, 3151
MfeI	CAATTG	1 cut(s)	1964
MflI	RGATCY	3 cut(s)	793, 1518, 1969
MhlI	GDGCHC	4 cut(s)	223, 1611, 2133, 2776
MlsI	TGGCCA	2 cut(s)	702, 2229
MluNI	TGGCCA	2 cut(s)	702, 2229
MlyI	GAGTC	9 cut(s)	60, 113, 116, 398, 512, 1435, 1841, 2993, 3016
Mox20I	TGGCCA	2 cut(s)	702, 2229
MroI	TCCGGA	2 cut(s)	1794, 2815
MroXI	GAANNNNTTC	2 cut(s)	1675, 2288
MscI	TGGCCA	2 cut(s)	702, 2229
MseI	TTAA	9 cut(s)	537, 900, 1115, 1851, 2058, 2147, 2219, 2798, 3336
MslI	CAYNNNNRTG	3 cut(s)	380, 2466, 3023
Msp20I	TGGCCA	2 cut(s)	702, 2229
MspA1I	CMGCKG	6 cut(s)	174, 310, 941, 1354, 2780, 3213
MspI	CCGG	9 cut(s)	304, 325, 351, 406, 451, 1795, 2478, 2707, 2816
MssI	GTTTAAAC	1 cut(s)	2220
MunI	CAATTG	1 cut(s)	1964
Mva1269I	GAATGC	3 cut(s)	1736, 1851, 2477
MvaI	CCWGG	6 cut(s)	1693, 2189, 2364, 2723, 2791, 3284
MvnI	CGCG	2 cut(s)	174, 3123
NciI	CCSGG	5 cut(s)	304, 352, 407, 2479, 2707
NcoI	CCATGG	2 cut(s)	2745, 3311
NdeI	CATATG	1 cut(s)	1048
NdeII	GATC	9 cut(s)	622, 793, 949, 1436, 1518, 1969, 2485, 2587, 3151
NlaIV	GGNNCC	8 cut(s)	118, 315, 449, 1182, 2094, 2159, 2656, 3254
NmeAIII	GCCGAG	3 cut(s)	93, 1400, 3224
NmuCI	GTSAC	8 cut(s)	52, 461, 1855, 2338, 2596, 3008, 3165, 3259
NspI	RCATGY	1 cut(s)	2316
NspV	TTCGAA	2 cut(s)	2242, 3204
PaeR7I	CTCGAG	1 cut(s)	101
PagI	TCATGA	1 cut(s)	3045
PceI	AGGCCT	1 cut(s)	2458
PciI	ACATGT	1 cut(s)	2312
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 366
PctI	GAATGC	3 cut(s)	1736, 1851, 2477
PdmI	GAANNNNTTC	2 cut(s)	1675, 2288
PfeI	GAWTC	8 cut(s)	727, 866, 886, 1720, 1891, 2039, 2184, 3156
PflFI	GACNNNGTC	2 cut(s)	248, 691
PflMI	CCANNNNNTGG	1 cut(s)	2299
PfoI	TCCNGGA	3 cut(s)	2362, 2789, 3282
PleI	GAGTC	9 cut(s)	59, 112, 116, 397, 511, 1434, 1840, 2992, 3015
PmeI	GTTTAAAC	1 cut(s)	2220
PpsI	GAGTC	9 cut(s)	59, 112, 116, 397, 511, 1434, 1840, 2992, 3015
Ppu21I	YACGTR	1 cut(s)	1811
PpuMI	RGGWCCY	2 cut(s)	593, 1181
PscI	ACATGT	1 cut(s)	2312
PshBI	ATTAAT	1 cut(s)	1115
PsiI	TTATAA	2 cut(s)	1904, 2510
Psp124BI	GAGCTC	2 cut(s)	223, 1611
Psp1406I	AACGTT	1 cut(s)	1128
Psp5II	RGGWCCY	2 cut(s)	593, 1181
Psp6I	CCWGG	6 cut(s)	1691, 2187, 2362, 2721, 2789, 3282
PspEI	GGTNACC	1 cut(s)	3089
PspFI	CCCAGC	1 cut(s)	720
PspGI	CCWGG	6 cut(s)	1691, 2187, 2362, 2721, 2789, 3282
PspN4I	GGNNCC	8 cut(s)	118, 315, 449, 1182, 2094, 2159, 2656, 3254
PspPI	GGNCC	7 cut(s)	39, 116, 313, 448, 566, 593, 1181
PspPPI	RGGWCCY	2 cut(s)	593, 1181
PspXI	VCTCGAGB	1 cut(s)	101
PstI	CTGCAG	3 cut(s)	940, 1014, 3120
PstNI	CAGNNNCTG	2 cut(s)	1009, 3068
PsuI	RGATCY	3 cut(s)	793, 1518, 1969
PsyI	GACNNNGTC	2 cut(s)	248, 691
PvuII	CAGCTG	2 cut(s)	2780, 3213
RsaI	GTAC	4 cut(s)	2379, 2547, 2849, 3254
RsaNI	GTAC	4 cut(s)	2378, 2546, 2848, 3253
RseI	CAYNNNNRTG	3 cut(s)	380, 2466, 3023
SacI	GAGCTC	2 cut(s)	223, 1611
SacII	CCGCGG	1 cut(s)	175
SaqAI	TTAA	9 cut(s)	537, 900, 1115, 1851, 2058, 2147, 2219, 2798, 3336
Sau3AI	GATC	9 cut(s)	622, 793, 949, 1436, 1518, 1969, 2485, 2587, 3151
Sau96I	GGNCC	7 cut(s)	39, 116, 313, 448, 566, 593, 1181
SchI	GAGTC	9 cut(s)	60, 113, 116, 398, 512, 1435, 1841, 2993, 3016
SduI	GDGCHC	4 cut(s)	223, 1611, 2133, 2776
SfaNI	GCATC	4 cut(s)	195, 1974, 2100, 2287
SfcI	CTRYAG	5 cut(s)	672, 936, 1010, 3116, 3179
Sfr274I	CTCGAG	1 cut(s)	101
Sfr303I	CCGCGG	1 cut(s)	175
SfuI	TTCGAA	2 cut(s)	2242, 3204
SgrBI	CCGCGG	1 cut(s)	175
SinI	GGWCC	4 cut(s)	313, 448, 593, 1181
SlaI	CTCGAG	1 cut(s)	101
SmiMI	CAYNNNNRTG	3 cut(s)	380, 2466, 3023
SmlI	CTYRAG	6 cut(s)	101, 557, 1019, 2381, 2943, 3170
SmoI	CTYRAG	6 cut(s)	101, 557, 1019, 2381, 2943, 3170
SnaBI	TACGTA	1 cut(s)	1811
SseBI	AGGCCT	1 cut(s)	2458
SspMI	CTAG	5 cut(s)	1545, 1922, 2018, 2405, 2675
SstI	GAGCTC	2 cut(s)	223, 1611
StuI	AGGCCT	1 cut(s)	2458
StyI	CCWWGG	3 cut(s)	2071, 2745, 3311
TaiI	ACGT	4 cut(s)	1096, 1131, 1813, 2373
TatI	WGTACW	1 cut(s)	2847
TfiI	GAWTC	8 cut(s)	727, 866, 886, 1720, 1891, 2039, 2184, 3156
Tru1I	TTAA	9 cut(s)	537, 900, 1115, 1851, 2058, 2147, 2219, 2798, 3336
Tru9I	TTAA	9 cut(s)	537, 900, 1115, 1851, 2058, 2147, 2219, 2798, 3336
TscAI	CASTG	5 cut(s)	49, 991, 1477, 1531, 2904
TseFI	GTSAC	8 cut(s)	52, 461, 1855, 2338, 2596, 3008, 3165, 3259
Tsp45I	GTSAC	8 cut(s)	52, 461, 1855, 2338, 2596, 3008, 3165, 3259
TspGWI	ACGGA	2 cut(s)	2508, 2584
TspRI	CASTG	5 cut(s)	49, 991, 1477, 1531, 2904
Tth111I	GACNNNGTC	2 cut(s)	248, 691
Van91I	CCANNNNNTGG	1 cut(s)	2299
VneI	GTGCAC	1 cut(s)	2772
VpaK11BI	GGWCC	4 cut(s)	313, 448, 593, 1181
VspI	ATTAAT	1 cut(s)	1115
XagI	CCTNNNNNAGG	1 cut(s)	3182
XapI	RAATTY	6 cut(s)	1441, 1743, 1826, 2284, 2610, 2810
XceI	RCATGY	1 cut(s)	2316
XcmI	CCANNNNNNNNNTGG	2 cut(s)	382, 1748
XhoI	CTCGAG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	1916
XmnI	GAANNNNTTC	2 cut(s)	1675, 2288
XspI	CTAG	5 cut(s)	1545, 1922, 2018, 2405, 2675
ZraI	GACGTC	1 cut(s)	2371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.