Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

41263824 .. 41265866

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034353

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTACCTTGTTCGGATCAAACTCTGTAGCTCCCCAAGCTTGTTAGATATACGTAGTGATCATGACACACTACGCGGATACCTTCACCATTTTGTTTTAGATATGAGGAAAATATTTAATTGTCTCGCTTCCATTGCAAATAGCGACCACAAGATCTGGAAATTCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTAGCCCACAAAGCCAGAGCTCAGTCTCTCTCCTCCTCCGCCGACCTCGTCTTTAAGTCCACAACCTCCGCCTCTGACACCCACGATGACATCGTCCCCCCGCCGCTTGACCCCAAGCACCGGCTCGACGATGCCGTTTTGCACTCCGGGTTTGCCGTCAACGATGAGACCATGAGTGTTTTGGAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

129

Amino Acids

14.4

Weight (kDa)

7.09

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	48 - 86	2e-08	RdRP1/2, RRM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	75, 168
AciI	CCGC	8 cut(s)	75, 166, 168, 178, 234, 264, 296, 299
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	30, 39, 215
AluI	AGCT	3 cut(s)	30, 39, 215
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	3 cut(s)	128, 225, 356
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	77, 181
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BceAI	ACGGC	2 cut(s)	314, 335
BciVI	GTATCC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	128, 225, 356
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	71
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	3 cut(s)	169, 178, 299
BlsI	GCNGC	3 cut(s)	170, 179, 300
Bme1390I	CCNGG	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	189, 316
BpuMI	CCSGG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	2 cut(s)	217, 220
BseX3I	CGGCCG	1 cut(s)	175
Bsh1236I	CGCG	2 cut(s)	75, 168
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	316, 342
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	3 cut(s)	128, 225, 356
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	15, 58, 153
BspACI	CCGC	8 cut(s)	75, 166, 168, 178, 234, 264, 296, 299
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	229
BspFNI	CGCG	2 cut(s)	75, 168
BspHI	TCATGA	1 cut(s)	61
BspPI	GGATC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	15, 58, 153
BstBAI	YACGTR	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	75, 168
BstKTI	GATC	3 cut(s)	18, 61, 156
BstMAI	GTCTC	3 cut(s)	128, 225, 356
BstMBI	GATC	3 cut(s)	15, 58, 153
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 134, 174, 177, 206
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	25
BstSNI	TACGTA	1 cut(s)	53
BstUI	CGCG	2 cut(s)	75, 168
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BstZI	CGGCCG	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	180
CciI	TCATGA	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	315
Cfr42I	CCGCGG	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	62, 367
CviJI	RGCY	8 cut(s)	30, 39, 171, 177, 200, 209, 215, 319
CviKI_1	RGCY	8 cut(s)	30, 39, 171, 177, 200, 209, 215, 319
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	17, 60, 155
DpnII	GATC	3 cut(s)	15, 58, 153
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
EciI	GGCGGA	2 cut(s)	223, 253
Ecl136II	GAGCTC	1 cut(s)	215
EclXI	CGGCCG	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	356
Eco52I	CGGCCG	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	2 cut(s)	65, 370
FaiI	YATR	4 cut(s)	50, 63, 104, 368
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	61, 366
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	169, 178, 299
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	3 cut(s)	169, 178, 299
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	3 cut(s)	169, 178, 299
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	316, 342
Hin1II	CATG	2 cut(s)	65, 370
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	2 cut(s)	316, 342
HphI	GGTGA	2 cut(s)	77, 181
Hpy166II	GTNNAC	3 cut(s)	189, 255, 355
Hpy188I	TCNGA	2 cut(s)	15, 271
Hpy188III	TCNNGA	3 cut(s)	62, 157, 384
Hpy8I	GTNNAC	3 cut(s)	189, 255, 355
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	137, 337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 134, 174, 177, 206
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	65, 370
Ksp22I	TGATCA	1 cut(s)	58
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	15, 58, 153
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	5 cut(s)	142, 197, 223, 329, 355
LweI	GCATC	2 cut(s)	189, 316
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	52
MalI	GATC	3 cut(s)	17, 60, 155
MboI	GATC	3 cut(s)	15, 58, 153
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	2 cut(s)	118, 161
MnlI	CCTC	6 cut(s)	99, 238, 241, 251, 271, 277
MseI	TTAA	2 cut(s)	117, 249
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	2 cut(s)	316, 342
MspR9I	CCNGG	1 cut(s)	343
MvnI	CGCG	2 cut(s)	75, 168
MwoI	GCNNNNNNNGC	5 cut(s)	36, 134, 174, 177, 206
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	3 cut(s)	15, 58, 153
NlaIII	CATG	2 cut(s)	65, 370
PagI	TCATGA	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 327
PflFI	GACNNNGTC	2 cut(s)	242, 287
PkrI	GCNGC	3 cut(s)	170, 179, 300
Ppu21I	YACGTR	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	2 cut(s)	242, 287
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	217
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	117, 249
SatI	GCNGC	3 cut(s)	169, 178, 299
Sau3AI	GATC	3 cut(s)	15, 58, 153
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	8 cut(s)	9, 32, 41, 55, 84, 217, 243, 263
SfaNI	GCATC	2 cut(s)	189, 316
SfcI	CTRYAG	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SnaBI	TACGTA	1 cut(s)	53
Sse9I	AATT	2 cut(s)	118, 161
SsiI	CCGC	8 cut(s)	75, 166, 168, 178, 234, 264, 296, 299
SspI	AATATT	1 cut(s)	114
SspMI	CTAG	1 cut(s)	197
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	341
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	118, 161
TauI	GCSGC	3 cut(s)	171, 180, 301
Tru1I	TTAA	2 cut(s)	117, 249
Tru9I	TTAA	2 cut(s)	117, 249
Tth111I	GACNNNGTC	2 cut(s)	242, 287
XapI	RAATTY	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.