Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8264681.1

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 767

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8264681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 766 bp

atgtttgaggatggtgatgggtatctttcggtttctgagacagttccgcttgtgaaatgtgaagcagattcagagttaccttatgagattcttttccagcttaatgcacttgttcatgctcagaagattagccttgctgcagcggagtgtgatctgattgagttctttggtggtttgagtatggacactgctaatgtgcttcttcagaagctgcagaagctcaagaccacttgttatgaccctctatcatatgcaaaggtgcagttgcaactcttagaggggaactctaagaaacgtctctccccccatcaaagattaatggagcataacgttatgagttgtcatagagccttgattaccccatcaaagatttactgcttgggtcctgagcttgaaaaatcaaactatgttgtgaagaactttgctcaatatgcttcagattttatgagggttacatttgttgaagaggattggagcaagcttccagtaaatgctctctccacaagtattgaacaaggtttctttgcaaaaccttttagaactggaatatatcagcggatattgtctattcttcgagatggaattgtgattggagataaaagatttgagtttctggctttctcggcgagtcaactccgatcaaattctgtttggatgtttgcttcaaatgacagtgtaaaggcagaagatattagagaatggatgggttgcttccacaagatccgcagtgtatctaaatgtgcagctaggatgggtcagctattca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

255

Amino Acids

28.94

Weight (kDa)

6.95

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	47, 143, 556, 724
AclI	AACGTT	1 cut(s)	330
AclWI	GGATC	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	188, 420
AgsI	TTSAA	4 cut(s)	395, 464, 512, 666
AluBI	AGCT	7 cut(s)	100, 211, 220, 391, 481, 746, 760
AluI	AGCT	7 cut(s)	100, 211, 220, 391, 481, 746, 760
Alw26I	GTCTC	2 cut(s)	32, 302
AlwI	GGATC	1 cut(s)	715
AlwNI	CAGNNNCTG	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	137, 140, 211, 743
ApoI	RAATTY	1 cut(s)	643
AseI	ATTAAT	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	383
BbvI	GCAGC	4 cut(s)	124, 152, 198, 755
BccI	CCATC	7 cut(s)	5, 11, 315, 370, 572, 697, 745
BcoDI	GTCTC	2 cut(s)	32, 302
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	2 cut(s)	138, 212
BisI	GCNGC	4 cut(s)	138, 141, 212, 744
BlsI	GCNGC	4 cut(s)	139, 142, 213, 745
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	485, 547
Bse8I	GATNNNNATC	1 cut(s)	21
BseGI	GGATG	4 cut(s)	16, 660, 708, 756
BseJI	GATNNNNATC	1 cut(s)	21
BseMII	CTCAG	3 cut(s)	27, 134, 378
BseNI	ACTGG	2 cut(s)	485, 547
BseXI	GCAGC	4 cut(s)	124, 152, 198, 755
BsgI	GTGCAG	2 cut(s)	281, 762
BsmAI	GTCTC	2 cut(s)	32, 302
BsmBI	CGTCTC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	151, 638, 720
BspACI	CCGC	4 cut(s)	47, 143, 556, 724
BspCNI	CTCAG	3 cut(s)	28, 133, 379
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	2 cut(s)	142, 216
BspPI	GGATC	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	485, 547
BssMI	GATC	3 cut(s)	151, 638, 720
Bst4CI	ACNGT	2 cut(s)	43, 674
Bst6I	CTCTTC	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	5 cut(s)	36, 120, 274, 288, 387
BstF5I	GGATG	4 cut(s)	16, 660, 708, 756
BstKTI	GATC	3 cut(s)	154, 641, 723
BstMAI	GTCTC	2 cut(s)	32, 302
BstMBI	GATC	3 cut(s)	151, 638, 720
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 431, 623
BstSFI	CTRYAG	2 cut(s)	138, 212
BstV1I	GCAGC	4 cut(s)	124, 152, 198, 755
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BtsCI	GGATG	4 cut(s)	16, 660, 708, 756
BtsI	GCAGTG	2 cut(s)	186, 733
BtsIMutI	CAGTG	3 cut(s)	186, 679, 733
Cac8I	GCNNGC	1 cut(s)	479
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	383
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	1 cut(s)	116
DdeI	CTNAG	5 cut(s)	36, 120, 274, 288, 387
DpnI	GATC	3 cut(s)	153, 640, 722
DpnII	GATC	3 cut(s)	151, 638, 720
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	188, 420
EcoO109I	RGGNCCY	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	1 cut(s)	119
FatI	CATG	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	138, 141, 212, 744
FokI	GGATG	3 cut(s)	23, 667, 715
Fsp4HI	GCNGC	4 cut(s)	138, 141, 212, 744
FspBI	CTAG	1 cut(s)	747
GluI	GCNGC	4 cut(s)	138, 141, 212, 744
Hin1II	CATG	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	632
HindII	GTYRAC	1 cut(s)	632
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	68, 88, 628
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188I	TCNGA	7 cut(s)	37, 73, 123, 156, 207, 439, 638
Hpy188III	TCNNGA	3 cut(s)	223, 386, 575
Hpy8I	GTNNAC	1 cut(s)	632
HpyCH4III	ACNGT	2 cut(s)	43, 674
HpyCH4IV	ACGT	2 cut(s)	295, 330
HpyCH4V	TGCA	8 cut(s)	107, 140, 214, 254, 262, 268, 527, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 431, 623
HpyF3I	CTNAG	5 cut(s)	36, 120, 274, 288, 387
HpySE526I	ACGT	2 cut(s)	295, 330
Hsp92II	CATG	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	151, 638, 720
LmnI	GCTCC	2 cut(s)	322, 474
LpnPI	CCDG	5 cut(s)	110, 399, 498, 528, 599
Lsp1109I	GCAGC	4 cut(s)	124, 152, 198, 755
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	2 cut(s)	295, 330
MaeIII	GTNAC	2 cut(s)	75, 451
MalI	GATC	3 cut(s)	153, 640, 722
MboI	GATC	3 cut(s)	151, 638, 720
MboII	GAAGA	6 cut(s)	136, 194, 427, 476, 563, 698
MflI	RGATCY	1 cut(s)	720
MluCI	AATT	2 cut(s)	582, 643
MlyI	GAGTC	1 cut(s)	637
MnlI	CCTC	4 cut(s)	252, 271, 441, 460
MseI	TTAA	2 cut(s)	102, 317
MspA1I	CMGCKG	2 cut(s)	143, 556
MwoI	GCNNNNNNNGC	3 cut(s)	217, 431, 623
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	3 cut(s)	151, 638, 720
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	384
NmeAIII	GCCGAG	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	68, 88
PkrI	GCNGC	4 cut(s)	139, 142, 213, 745
PleI	GAGTC	1 cut(s)	636
PpsI	GAGTC	1 cut(s)	636
PpuMI	RGGWCCY	1 cut(s)	383
PshBI	ATTAAT	1 cut(s)	317
Psp1406I	AACGTT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	383
PspPPI	RGGWCCY	1 cut(s)	383
PstI	CTGCAG	2 cut(s)	142, 216
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	102, 317
SatI	GCNGC	4 cut(s)	138, 141, 212, 744
Sau3AI	GATC	3 cut(s)	151, 638, 720
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	637
SfcI	CTRYAG	2 cut(s)	138, 212
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	582, 643
SsiI	CCGC	4 cut(s)	47, 143, 556, 724
SspMI	CTAG	1 cut(s)	747
TaaI	ACNGT	2 cut(s)	43, 674
TaiI	ACGT	2 cut(s)	298, 333
TaqI	TCGA	1 cut(s)	574
TasI	AATT	2 cut(s)	582, 643
TfiI	GAWTC	2 cut(s)	68, 88
Tru1I	TTAA	2 cut(s)	102, 317
Tru9I	TTAA	2 cut(s)	102, 317
TscAI	CASTG	3 cut(s)	193, 679, 733
TseI	GCWGC	4 cut(s)	137, 140, 211, 743
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	3 cut(s)	193, 679, 733
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	1 cut(s)	643
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.