Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Forward (+)

57411346 .. 57415691

Gene Structure 4346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3408 bp

ATGGGCGCTGCGGCGGCGGAGGTGGAGGCGGAGAGGCCCACTGTCCGAGTCACCAACATCCCCTGCACCATCACCGCCACCGACCTCCTCACCTTCCTCGAGTCCACTCTCGGCCCCGACTCCATCTTCGCCATCGAAATCGCCAGCGACCGCAAGAACTGGAAATCCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTAGCCCACAAAGCCAGAGCTCAGTCTCTCTCCTCCTCCGCCGACCTCGTCTTCAAGTCCCACAACCTCCGCCTCTTCGACACCCACGATGACATCATCCCCCGGCCGCTGGACCCCAAGCACCGGCTCGACGACACCCTTTTGCACGCCGGGTTTGTCGTCAACGACGAGACCATGAGCGTGCTGGAGTCGTGGGAGGGCGTCCGGGCTTGGGTCATGCCCGAGAGGCGGCGGGTCGAGTTTTGGGTCCGGCGGGGCGGTGACTGTTTCAAGATGGAGGTTGCGTTTGAGAATATTGTGGAGTCTGTTGGGTGTTGTTTGGGTGGGGATAAAGTTAATGCTCTGCTTTTGAAGCTCAAGTTTGGCCCGAAGATTTTTCGGAAAGTATCAGGACCTAATGTAGCTTCCAAGTTTAGTGCTGATCGGTATCAGTTTTGCAAGGAAGACTTTGATTATCTGTGGGTGAGGACTACAGATTTTTCTGAGACGAAGTCAATTGGCCATTCGACTTCGTTTTGCTGGGAGATTCAGGAGGACTTTTTGGCGGCGGGTGTTTTTATGAAGTTTCCTAGCTTTAGGAAAGATGTGGTGGATCTCATGTTTGAGGATGGTGATGGGTATCTTTCGGTTTCTGAGACAGTTCCGCATGTGAAATGTGAAGCAGATTCAGAGTTACCTTATGAGATTCTTTTCCAGCTTAATGCACTTGTTCATGCTCAGAAGATTAGCCTTGCCGCAGCGGAGTGTGATCTGATTGAGTTCTTTGGTGGTTTGAGTACCGACACTGTGAATGTGCTTCTTCAGAAGCTGCAGAAGCTCAAGACCACTTGTTATGACCCTCTATCATATGCAAAGGTGCAGTTGCAACTCTTAGAGGAGAACTCTAAGAAACGTCTCTCCCCCCATCAAAGATTAATGGAGCATAACGTTATGAGTTGTCATAGAGCCTTGATTACCCCATCAAAGATTTACTGCTTGGGTCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCACAATATGCTTCAGATTTTATGAGGGTTACATTTGTTGAAGAGGATTGGAGCAAGCTTCCTGTAAATGCTCTCTCCACAAGTATTGAACAAGGTTTCTTTGCAAAACCTTTTAGAACTACAATATATCAGCGGATATTGTCTATTCTTCGAGATGGAATTGTGATTGGAGATAAAAGATTTGAGTTTCTGGCTTTCTCGGCGAGTCAACTCCGATCAAATTCTGTTTGGATGTTTGCTTCAAATGACAATGTAAAGGCAGCTAATATTAGAGAATGGATGGGTTGCTTCCACAAGATCCGCAGTGTATCTAAATGTGCTGCTAGGATGGGTCAGCTATTCAGTTCTTCAACGCAAACTCTTGTTGTCCCTCAACAGGATGTGGATCTCATTCCTGACATTGAGACTTCTTCTGATGGTGTGAGTTACTGCTTCTCTGATGGTATTGGAAAGATTTCCTTATCTTTTGCCAGGCAAGTTGCTCAAAAGTGCGGACTGAATCACACTCCTTCAGCATTCCAAATTCAATATGGTGGATATAAAGGGGTGATAGCCGTTGACCGTAATTCTTTCCGGAAGCTGTCTCTACGTAGTAGTATGCTCAAATTTGAGTCGAACAACAGAATGCTTAATGTCATTAAATGGAGTTCCTCCTTGCCCTGCTTTCTGAATCGAGAAATTATAACCCTCATGTCTACGTTAGGGGTAGAGGATGAAGCATTTGAGGCATTGCAACAGGAGCAATTGGATCTGTTAGGAAGGATGCGGAAAGAAAGAAATGCAGCACTAACTGCCCTAGAGAAACTAAGCGGTGCTGATTCCAGTAACATTCTTGTTAAGATGTTGCTCCAAGGTTATGAGCCTAATCTGGAACCTTATCTCTCAATGATGCTTCAAGCACACTATGAGCACCACTTGACTGATTTAAAGAGTAGGTGCCGCATATATGTCCCAAAAGGAAGAATCCTGGTTGGGTGCTTGGATGAAACTGGTAGTTTAAACTATGGCCAAGTTTATGTTCGAATAACCATGACTAAAGCAGAGCAAGAAATTGGGCATCAGAATTTCTTCCAGAGGGTGGATGAGGCAACATGTATAGTAACAGGGAAGGTGGTTGTCACCAAAAATCCTTGTCTTCATCCTGGAGACATCAGGGTACTTGAGGCTGTCTATGATGTGGGACTAGAGGAGAAGCATATGGTGGATTGCCTTGTATTTCCCCAGAAAGGAGGAAGGCCTCATCCAAATGAATGCTCCGGGGGTGATCTGGACGGAGACTTGTTTTTTATAAGTTGGGATGAAAGTCTTGCTCCTCCTCATACTGTACCTCCGATGGACTATTCTGCACGGAGGCCTCCCAATTTGGATCACGATGTGACTTTAGAGGAAATTCAAAAGTTCTTTGTGGATTACATGATAAATGATAATTTGGGTGCCATCTCTACTGCACATATAGTTCATTCTGACCACGAACCAGAAAAAGCCCTGAGTAAAAAATGCCTGGAGTTGGCAGCCCTGCACTTCATGGCTGTTGACTTTGCCGAAACTGGTGCACCAGCTGAAATGTCCTGGATTTTAAAACCAAGAGAATTTCCCGATTTCATGGAAAGGGTGGACAAACCGATGTACATCTCCGATGGGGCATTAGGAAAGCTATACCGTGCAACTCTTAGCTCAGTGGTTCAAGAACAAACAACTGTTGTCTGGTCAGGGCATATGGCTCAAGCAGCTTATGACAGGGAGCTTGAAGCGCAAGGTTTCGAGTCCTTTCTTGACATTGCAGAGAGTCACAGGGACACATACATAGAGAAGATGAGAAGTCTCATGAACTATTATGAAGCAGCGACTGAAGATGAAATACTGACTGGTAACCTCCGAAACCGTGCAGCCTATCTGCAGCACGATAACAGGAGATATATTGACTTGAAGGATCGAATCTTGCTGTCACTCAAGACCCTACAGAAGGAAGCAAAAGGATGGTTCGAAAGCAGCTGCAAGGTGAGTGAGCAGCAGCAGTTGGCCTCGGCATGGTACCATGTGACTTACAACTCATCTTATTTCCAGGAAGACGTGAACTGCCTGAGCTTTCCATGGATTGTGGGCGACATTCTGCTCAACATCAAGTCTCTGAATAGCCGAAGAAACCGCACGGCTCCTGTCAAACCATTTCATCAGTCTGATATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1136

Amino Acids

128.68

Weight (kDa)

5.92

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	14 - 97	6.6e-28	RdRP1/2, RRM domain
PH_RDR2	PF24823	114 - 265	1.6e-62	RDR2 PH-like domain
RdRP_helical	PF26252	281 - 366	5.8e-14	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	384 - 961	2.3e-186	RNA dependent RNA polymerase
RdRP_head	PF26253	983 - 1123	1.2e-38	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1901, 2507
Acc65I	GGTACC	1 cut(s)	3249
AccB1I	GGYRCC	3 cut(s)	2154, 2651, 3249
AccB7I	CCANNNNNTGG	1 cut(s)	2296
AccI	GTMKAC	1 cut(s)	1913
AccII	CGCG	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	1791
AclI	AACGTT	1 cut(s)	1125
AclWI	GGATC	6 cut(s)	798, 1510, 1611, 1974, 2592, 3156
AcoI	YGGCCR	4 cut(s)	178, 302, 697, 2224
AcsI	RAATTY	6 cut(s)	1438, 1740, 1823, 2281, 2607, 2807
AcuI	CTGAAG	4 cut(s)	983, 1215, 1713, 3087
AcyI	GRCGYC	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	2593
AfaI	GTAC	5 cut(s)	976, 2376, 2544, 2846, 3251
AflIII	ACRYGT	1 cut(s)	2309
AjiI	CACGTC	1 cut(s)	3289
AjnI	CCWGG	6 cut(s)	1688, 2184, 2359, 2718, 2786, 3279
AjuI	GAANNNNNNNTTGG	2 cut(s)	2220, 2252
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
Alw21I	GWGCWC	3 cut(s)	220, 2130, 2773
Alw44I	GTGCAC	1 cut(s)	2769
AlwI	GGATC	6 cut(s)	798, 1510, 1611, 1974, 2592, 3156
AlwNI	CAGNNNCTG	2 cut(s)	1006, 3065
Ama87I	CYCGRG	2 cut(s)	98, 419
Aor13HI	TCCGGA	1 cut(s)	1791
ApaLI	GTGCAC	1 cut(s)	2769
ApoI	RAATTY	6 cut(s)	1438, 1740, 1823, 2281, 2607, 2807
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AseI	ATTAAT	1 cut(s)	1112
Asp700I	GAANNNNTTC	2 cut(s)	1672, 2285
Asp718I	GGTACC	1 cut(s)	3249
AspLEI	GCGC	2 cut(s)	8, 2971
AspS9I	GGNCC	7 cut(s)	36, 113, 310, 445, 563, 590, 1178
AsuC2I	CCSGG	4 cut(s)	301, 349, 404, 2476
AsuII	TTCGAA	2 cut(s)	2239, 3201
AvaI	CYCGRG	2 cut(s)	98, 419
AvaII	GGWCC	4 cut(s)	310, 445, 590, 1178
BaeGI	GKGCMC	1 cut(s)	2773
BalI	TGGCCA	2 cut(s)	699, 2226
BanI	GGYRCC	3 cut(s)	2154, 2651, 3249
BanII	GRGCYC	1 cut(s)	220
BarI	GAAGNNNNNNTAC	2 cut(s)	3060, 3092
BbsI	GAAGAC	4 cut(s)	241, 648, 2345, 3291
Bbv12I	GWGCWC	3 cut(s)	220, 2130, 2773
BceAI	ACGGC	2 cut(s)	1757, 3384
BcgI	CGANNNNNNTGC	2 cut(s)	2750, 2784
BciT130I	CCWGG	6 cut(s)	1690, 2186, 2361, 2720, 2788, 3281
BcnI	CCSGG	4 cut(s)	301, 349, 404, 2476
BfaI	CTAG	5 cut(s)	200, 768, 1542, 2015, 2402
BfmI	CTRYAG	4 cut(s)	669, 1007, 3113, 3176
BfoI	RGCGCY	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	424
Bme18I	GGWCC	4 cut(s)	310, 445, 590, 1178
BmeT110I	CYCGRG	2 cut(s)	98, 419
BmgBI	CACGTC	1 cut(s)	3289
BmgT120I	GGNCC	7 cut(s)	36, 113, 310, 445, 563, 590, 1178
BmiI	GGNNCC	9 cut(s)	115, 312, 446, 1179, 2091, 2156, 2653, 3251, 3372
BmsI	GCATC	4 cut(s)	192, 1971, 2097, 2284
BpiI	GAAGAC	4 cut(s)	241, 648, 2345, 3291
BplI	GAGNNNNNCTC	2 cut(s)	1064, 1096
BpmI	CTGGAG	3 cut(s)	404, 2382, 2741
Bpu10I	CCTNAGC	2 cut(s)	1182, 3299
Bpu14I	TTCGAA	2 cut(s)	2239, 3201
BpuEI	CTTGAG	5 cut(s)	539, 1001, 2399, 2925, 3152
BpuMI	CCSGG	4 cut(s)	301, 349, 404, 2476
BsaAI	YACGTR	1 cut(s)	1808
BsaBI	GATNNNNATC	4 cut(s)	624, 816, 1602, 2846
BsaHI	GRCGYC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	6 cut(s)	169, 299, 2068, 2475, 3240, 3308
BsaWI	WCCGGW	1 cut(s)	1791
BsaXI	ACNNNNNCTCC	4 cut(s)	467, 497, 2530, 2560
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	6 cut(s)	164, 187, 2040, 2212, 2770, 3088
Bse3DI	GCAATG	2 cut(s)	1946, 2994
Bse8I	GATNNNNATC	4 cut(s)	624, 816, 1602, 2846
BseAI	TCCGGA	1 cut(s)	1791
BseBI	CCWGG	6 cut(s)	1690, 2186, 2361, 2720, 2788, 3281
BseDI	CCNNGG	6 cut(s)	169, 299, 2068, 2475, 3240, 3308
BseJI	GATNNNNATC	4 cut(s)	624, 816, 1602, 2846
BseMI	GCAATG	2 cut(s)	1946, 2994
BseMII	CTCAG	8 cut(s)	233, 672, 822, 929, 1173, 2696, 2907, 3290
BseNI	ACTGG	6 cut(s)	164, 187, 2040, 2212, 2770, 3088
BseRI	GAGGAG	7 cut(s)	77, 220, 223, 1088, 2420, 2520, 2523
BseSI	GKGCMC	1 cut(s)	2773
BseX3I	CGGCCG	2 cut(s)	178, 302
BseYI	CCCAGC	1 cut(s)	717
BsgI	GTGCAG	6 cut(s)	49, 1076, 2547, 2649, 2720, 3123
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	3 cut(s)	151, 181, 305
BshNI	GGYRCC	3 cut(s)	2154, 2651, 3249
BsiEI	CGRYCG	3 cut(s)	151, 181, 305
BsiHKAI	GWGCWC	3 cut(s)	220, 2130, 2773
BsiHKCI	CYCGRG	2 cut(s)	98, 419
BsiSI	CCGG	7 cut(s)	301, 322, 348, 403, 448, 1792, 2475
BslFI	GGGAC	5 cut(s)	241, 1571, 2153, 2412, 3026
BsmBI	CGTCTC	2 cut(s)	677, 1097
BsmFI	GGGAC	5 cut(s)	241, 1571, 2153, 2412, 3026
BsmI	GAATGC	3 cut(s)	1733, 1848, 2474
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	98, 419
Bsp119I	TTCGAA	2 cut(s)	2239, 3201
Bsp1286I	GDGCHC	3 cut(s)	220, 2130, 2773
Bsp13I	TCCGGA	1 cut(s)	1791
Bsp1407I	TGTACA	1 cut(s)	2844
Bsp19I	CCATGG	1 cut(s)	3308
BspCNI	CTCAG	8 cut(s)	232, 673, 823, 928, 1174, 2697, 2906, 3291
BspEI	TCCGGA	1 cut(s)	1791
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	3042
BspLI	GGNNCC	9 cut(s)	115, 312, 446, 1179, 2091, 2156, 2653, 3251, 3372
BspMAI	CTGCAG	2 cut(s)	1011, 3117
BspPI	GGATC	6 cut(s)	798, 1510, 1611, 1974, 2592, 3156
BspT104I	TTCGAA	2 cut(s)	2239, 3201
BspT107I	GGYRCC	3 cut(s)	2154, 2651, 3249
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	1946, 2994
BsrFI	RCCGGY	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	2844
BsrI	ACTGG	6 cut(s)	164, 187, 2040, 2212, 2770, 3088
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	6 cut(s)	169, 299, 2068, 2475, 3240, 3308
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	2068, 3308
Bst2UI	CCWGG	6 cut(s)	1690, 2186, 2361, 2720, 2788, 3281
Bst4CI	ACNGT	9 cut(s)	43, 464, 838, 985, 1781, 2542, 2879, 2917, 3101
Bst6I	CTCTTC	2 cut(s)	278, 1254
BstACI	GRCGYC	1 cut(s)	399
BstAPI	GCANNNNNTGC	2 cut(s)	1226, 2009
BstAUI	TGTACA	1 cut(s)	2844
BstBAI	YACGTR	1 cut(s)	1808
BstBI	TTCGAA	2 cut(s)	2239, 3201
BstC8I	GCNNGC	4 cut(s)	145, 345, 380, 1274
BstDSI	CCRYGG	2 cut(s)	169, 3308
BstEII	GGTNACC	1 cut(s)	3086
BstENI	CCTNNNNNAGG	1 cut(s)	3179
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 2971
BstMCI	CGRYCG	3 cut(s)	151, 181, 305
BstNI	CCWGG	6 cut(s)	1690, 2186, 2361, 2720, 2788, 3281
BstNSI	RCATGY	2 cut(s)	848, 2313
BstPI	GGTNACC	1 cut(s)	3086
BstSFI	CTRYAG	4 cut(s)	669, 1007, 3113, 3176
BstSLI	GKGCMC	1 cut(s)	2773
BstSNI	TACGTA	1 cut(s)	1808
BstUI	CGCG	1 cut(s)	171
BstV2I	GAAGAC	4 cut(s)	241, 648, 2345, 3291
BstX2I	RGATCY	4 cut(s)	790, 1515, 1603, 1966
BstYI	RGATCY	4 cut(s)	790, 1515, 1603, 1966
BstZI	CGGCCG	2 cut(s)	178, 302
BtgI	CCRYGG	2 cut(s)	169, 3308
BtrI	CACGTC	1 cut(s)	3289
BtsI	GCAGTG	1 cut(s)	1528
BtsIMutI	CAGTG	4 cut(s)	39, 981, 1528, 2901
Cac8I	GCNNGC	4 cut(s)	145, 345, 380, 1274
CaiI	CAGNNNCTG	2 cut(s)	1006, 3065
CciI	TCATGA	1 cut(s)	3042
CfoI	GCGC	2 cut(s)	8, 2971
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	7 cut(s)	36, 113, 310, 445, 563, 590, 1178
Cfr42I	CCGCGG	1 cut(s)	172
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	5 cut(s)	975, 2375, 2543, 2845, 3250
CspCI	CAANNNNNGTGG	2 cut(s)	1285, 1320
CviQI	GTAC	5 cut(s)	975, 2375, 2543, 2845, 3250
DraI	TTTAAA	3 cut(s)	2145, 2217, 2796
DraIII	CACNNNGTG	1 cut(s)	2593
EaeI	YGGCCR	4 cut(s)	178, 302, 697, 2224
EagI	CGGCCG	2 cut(s)	178, 302
Eam1104I	CTCTTC	2 cut(s)	278, 1254
EarI	CTCTTC	2 cut(s)	278, 1254
EciI	GGCGGA	4 cut(s)	32, 44, 226, 257
Ecl136II	GAGCTC	1 cut(s)	218
EclXI	CGGCCG	2 cut(s)	178, 302
Eco105I	TACGTA	1 cut(s)	1808
Eco130I	CCWWGG	2 cut(s)	2068, 3308
Eco147I	AGGCCT	2 cut(s)	2455, 2572
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	4 cut(s)	310, 445, 590, 1178
Eco52I	CGGCCG	2 cut(s)	178, 302
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	4 cut(s)	983, 1215, 1713, 3087
Eco88I	CYCGRG	2 cut(s)	98, 419
Eco91I	GGTNACC	1 cut(s)	3086
EcoICRI	GAGCTC	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	3179
EcoO109I	RGGNCCY	2 cut(s)	590, 1178
EcoO65I	GGTNACC	1 cut(s)	3086
EcoRII	CCWGG	6 cut(s)	1688, 2184, 2359, 2718, 2786, 3279
EcoT14I	CCWWGG	2 cut(s)	2068, 3308
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	2068, 3308
Esp3I	CGTCTC	2 cut(s)	677, 1097
FalI	AAGNNNNNCTT	4 cut(s)	629, 661, 1661, 1693
FaqI	GGGAC	5 cut(s)	241, 1571, 2153, 2412, 3026
FauI	CCCGC	4 cut(s)	176, 423, 444, 739
FauNDI	CATATG	3 cut(s)	1045, 2415, 2934
FblI	GTMKAC	1 cut(s)	1913
FriOI	GRGCYC	1 cut(s)	220
FspBI	CTAG	5 cut(s)	200, 768, 1542, 2015, 2402
GlaI	GCGC	2 cut(s)	7, 2970
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	3 cut(s)	404, 2382, 2741
HaeII	RGCGCY	1 cut(s)	9
HapII	CCGG	7 cut(s)	301, 322, 348, 403, 448, 1792, 2475
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	2 cut(s)	8, 2971
Hin1I	GRCGYC	1 cut(s)	399
Hin6I	GCGC	2 cut(s)	6, 2969
HinP1I	GCGC	2 cut(s)	6, 2969
HincII	GTYRAC	4 cut(s)	361, 1427, 1777, 2752
HindII	GTYRAC	4 cut(s)	361, 1427, 1777, 2752
HindIII	AAGCTT	1 cut(s)	1274
HpaII	CCGG	7 cut(s)	301, 322, 348, 403, 448, 1792, 2475
Hpy99I	CGWCG	2 cut(s)	332, 368
HpyAV	CCTTC	7 cut(s)	103, 1737, 1971, 2320, 2445, 3139, 3175
HpyCH4III	ACNGT	9 cut(s)	43, 464, 838, 985, 1781, 2542, 2879, 2917, 3101
HpyCH4IV	ACGT	5 cut(s)	1090, 1125, 1807, 1916, 3288
HpySE526I	ACGT	5 cut(s)	1090, 1125, 1807, 1916, 3288
Hsp92I	GRCGYC	1 cut(s)	399
HspAI	GCGC	2 cut(s)	6, 2969
Kpn2I	TCCGGA	1 cut(s)	1791
KpnI	GGTACC	1 cut(s)	3253
KspI	CCGCGG	1 cut(s)	172
LmnI	GCTCC	8 cut(s)	1117, 1269, 1957, 2070, 2477, 2533, 2959, 3376
LweI	GCATC	4 cut(s)	192, 1971, 2097, 2284
MaeI	CTAG	5 cut(s)	200, 768, 1542, 2015, 2402
MaeII	ACGT	5 cut(s)	1090, 1125, 1807, 1916, 3288
MfeI	CAATTG	2 cut(s)	693, 1961
MflI	RGATCY	4 cut(s)	790, 1515, 1603, 1966
MhlI	GDGCHC	3 cut(s)	220, 2130, 2773
MlsI	TGGCCA	2 cut(s)	699, 2226
MluNI	TGGCCA	2 cut(s)	699, 2226
MlyI	GAGTC	9 cut(s)	57, 110, 113, 395, 509, 1432, 1838, 2990, 3013
Mox20I	TGGCCA	2 cut(s)	699, 2226
MroI	TCCGGA	1 cut(s)	1791
MroXI	GAANNNNTTC	2 cut(s)	1672, 2285
MscI	TGGCCA	2 cut(s)	699, 2226
MseI	TTAA	9 cut(s)	534, 897, 1112, 1848, 1857, 2055, 2144, 2216, 2795
MslI	CAYNNNNRTG	2 cut(s)	377, 2463
Msp20I	TGGCCA	2 cut(s)	699, 2226
MspA1I	CMGCKG	6 cut(s)	171, 307, 938, 1351, 2777, 3210
MspI	CCGG	7 cut(s)	301, 322, 348, 403, 448, 1792, 2475
MssI	GTTTAAAC	1 cut(s)	2217
MunI	CAATTG	2 cut(s)	693, 1961
Mva1269I	GAATGC	3 cut(s)	1733, 1848, 2474
MvaI	CCWGG	6 cut(s)	1690, 2186, 2361, 2720, 2788, 3281
MvnI	CGCG	1 cut(s)	171
NciI	CCSGG	4 cut(s)	301, 349, 404, 2476
NcoI	CCATGG	1 cut(s)	3308
NdeI	CATATG	3 cut(s)	1045, 2415, 2934
NlaIV	GGNNCC	9 cut(s)	115, 312, 446, 1179, 2091, 2156, 2653, 3251, 3372
NmeAIII	GCCGAG	3 cut(s)	90, 1397, 3221
NmuCI	GTSAC	7 cut(s)	49, 458, 2335, 2593, 3005, 3162, 3256
NspI	RCATGY	2 cut(s)	848, 2313
NspV	TTCGAA	2 cut(s)	2239, 3201
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	3042
PceI	AGGCCT	2 cut(s)	2455, 2572
PciI	ACATGT	1 cut(s)	2309
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 363
PctI	GAATGC	3 cut(s)	1733, 1848, 2474
PdmI	GAANNNNTTC	2 cut(s)	1672, 2285
PfeI	GAWTC	8 cut(s)	724, 863, 883, 1717, 1888, 2036, 2181, 3153
PflFI	GACNNNGTC	2 cut(s)	245, 688
PflMI	CCANNNNNTGG	1 cut(s)	2296
PfoI	TCCNGGA	3 cut(s)	2359, 2786, 3279
PleI	GAGTC	9 cut(s)	56, 109, 113, 394, 508, 1431, 1837, 2989, 3012
PmeI	GTTTAAAC	1 cut(s)	2217
PpsI	GAGTC	9 cut(s)	56, 109, 113, 394, 508, 1431, 1837, 2989, 3012
Ppu21I	YACGTR	1 cut(s)	1808
PpuMI	RGGWCCY	2 cut(s)	590, 1178
PscI	ACATGT	1 cut(s)	2309
PshBI	ATTAAT	1 cut(s)	1112
PsiI	TTATAA	2 cut(s)	1901, 2507
Psp124BI	GAGCTC	1 cut(s)	220
Psp1406I	AACGTT	1 cut(s)	1125
Psp5II	RGGWCCY	2 cut(s)	590, 1178
Psp6I	CCWGG	6 cut(s)	1688, 2184, 2359, 2718, 2786, 3279
PspEI	GGTNACC	1 cut(s)	3086
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	6 cut(s)	1688, 2184, 2359, 2718, 2786, 3279
PspN4I	GGNNCC	9 cut(s)	115, 312, 446, 1179, 2091, 2156, 2653, 3251, 3372
PspPI	GGNCC	7 cut(s)	36, 113, 310, 445, 563, 590, 1178
PspPPI	RGGWCCY	2 cut(s)	590, 1178
PspXI	VCTCGAGB	1 cut(s)	98
PstI	CTGCAG	2 cut(s)	1011, 3117
PstNI	CAGNNNCTG	2 cut(s)	1006, 3065
PsuI	RGATCY	4 cut(s)	790, 1515, 1603, 1966
PsyI	GACNNNGTC	2 cut(s)	245, 688
PvuII	CAGCTG	2 cut(s)	2777, 3210
RsaI	GTAC	5 cut(s)	976, 2376, 2544, 2846, 3251
RsaNI	GTAC	5 cut(s)	975, 2375, 2543, 2845, 3250
RseI	CAYNNNNRTG	2 cut(s)	377, 2463
SacI	GAGCTC	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	172
SaqAI	TTAA	9 cut(s)	534, 897, 1112, 1848, 1857, 2055, 2144, 2216, 2795
Sau96I	GGNCC	7 cut(s)	36, 113, 310, 445, 563, 590, 1178
SchI	GAGTC	9 cut(s)	57, 110, 113, 395, 509, 1432, 1838, 2990, 3013
SduI	GDGCHC	3 cut(s)	220, 2130, 2773
SfaNI	GCATC	4 cut(s)	192, 1971, 2097, 2284
SfcI	CTRYAG	4 cut(s)	669, 1007, 3113, 3176
Sfr274I	CTCGAG	1 cut(s)	98
Sfr303I	CCGCGG	1 cut(s)	172
SfuI	TTCGAA	2 cut(s)	2239, 3201
SgrBI	CCGCGG	1 cut(s)	172
SinI	GGWCC	4 cut(s)	310, 445, 590, 1178
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	377, 2463
SmlI	CTYRAG	6 cut(s)	98, 554, 1016, 2378, 2940, 3167
SmoI	CTYRAG	6 cut(s)	98, 554, 1016, 2378, 2940, 3167
SnaBI	TACGTA	1 cut(s)	1808
SseBI	AGGCCT	2 cut(s)	2455, 2572
SspI	AATATT	2 cut(s)	493, 1486
SspMI	CTAG	5 cut(s)	200, 768, 1542, 2015, 2402
SstI	GAGCTC	1 cut(s)	220
StuI	AGGCCT	2 cut(s)	2455, 2572
StyI	CCWWGG	2 cut(s)	2068, 3308
TaaI	ACNGT	9 cut(s)	43, 464, 838, 985, 1781, 2542, 2879, 2917, 3101
TaiI	ACGT	5 cut(s)	1093, 1128, 1810, 1919, 3291
TatI	WGTACW	1 cut(s)	2844
TauI	GCSGC	9 cut(s)	14, 17, 174, 183, 307, 430, 746, 935, 2160
TfiI	GAWTC	8 cut(s)	724, 863, 883, 1717, 1888, 2036, 2181, 3153
Tru1I	TTAA	9 cut(s)	534, 897, 1112, 1848, 1857, 2055, 2144, 2216, 2795
Tru9I	TTAA	9 cut(s)	534, 897, 1112, 1848, 1857, 2055, 2144, 2216, 2795
TscAI	CASTG	4 cut(s)	46, 988, 1528, 2901
TseFI	GTSAC	7 cut(s)	49, 458, 2335, 2593, 3005, 3162, 3256
Tsp45I	GTSAC	7 cut(s)	49, 458, 2335, 2593, 3005, 3162, 3256
TspGWI	ACGGA	2 cut(s)	2505, 2581
TspRI	CASTG	4 cut(s)	46, 988, 1528, 2901
Tth111I	GACNNNGTC	2 cut(s)	245, 688
Van91I	CCANNNNNTGG	1 cut(s)	2296
VneI	GTGCAC	1 cut(s)	2769
VpaK11BI	GGWCC	4 cut(s)	310, 445, 590, 1178
VspI	ATTAAT	1 cut(s)	1112
XagI	CCTNNNNNAGG	1 cut(s)	3179
XapI	RAATTY	6 cut(s)	1438, 1740, 1823, 2281, 2607, 2807
XceI	RCATGY	2 cut(s)	848, 2313
XcmI	CCANNNNNNNNNTGG	2 cut(s)	379, 1745
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	1913
XmnI	GAANNNNTTC	2 cut(s)	1672, 2285
XspI	CTAG	5 cut(s)	200, 768, 1542, 2015, 2402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.