Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

10428334 .. 10433270

Gene Structure 4937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG140300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3408 bp

ATGGGCGCGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGAGGCCCACCGTCCGAGTCACCAACATCCCCTGCACCATCACCGCCAACGACCTCCTCACCTTCCTCGAGTCCACTCTCGGCCCCGACTCCATCTTCGCCATCGAAATCGCCAGCGACCACAAGAACTGGAAATCCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTAACCCACAAAGCCAGAGCTCAGTCTCTCTCCTCCTCCGCCGACCTCGTCTTCAAGTCCCACAACCTCCGCCTCTTCGACACCAACGATGACATCATCCCCCGGCCGCTGGACCCCAAGCACCGTCTCGACGACACCGTTTTGCACGCCGGGTTTGTCGTCAACGACGAGACCATGAGCGTGCTGGAGTCGTGGGAGGGCGTCCGGGCTTGGGTCATGCCCGAGAGGCGGCGGGTCGAGTTTTGGGTCCGGCGGGGCGGTGACTGTTTCAAGATGGAGGTTGCGTTTGAGAATATTGTGGAGTCTGTTGGGTGTTGTTTGGGTGGGGCTAAAGTTAATGCTCTGCTTTTGAAGCTCAAGTTTGGCCCCAAGATTTTTCGGAAAGTATCAGGACCTAATGTAGCTTCCAAGTTTAGTGCTGATCGGTATCACTTTTGCAAGGAAGACTTTGATTATCTGTGGGTGAGGACTACAGATTTTTCTGAGACGAAGTCGATTGGCCATTCGACTTCGTTTTGCTGGGAGATTCAGGAGGACTTTTTGGTGGCGGGTCTTTTTATGAAGTTTCCGAGCTTTAGGAAAGATGTGGTGGATCTCATGTTTGAGGATGGTGATGGGTATCTTTCGGTTTCTGAGACAGTTCCGCTTGTGAAATGTGAAGCAGATTCAGAGTTACCTTATGAGATTCTTTTCCAGCTTAATGCACTTGTTCATGCTCAGAAGATTAGCCTTGCTGCAGCGGAGTGTGATCTGATTGAGTTCTTTGGTGGTTTGAGTATGGACACTGCTAATGTGCTTCTTCAGAAGCTGCAGAAGCTCAAGACCACTTGTTATGACCCTCTATCATATGCAAAGGTGCAGTTGCAACTCTTAGACGGGAACTCTAAGAAACGTCTCTCCCCCCATCAAAGATTAATGGAACATAACGTAATGAGTTGTCATAGAGCCTTGATTACCCCATCAAAGATTTACTGCTTAGGTCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCACAATATGCTTCAGATTTTATGAGGGTTACATTTGTTGAAGAGGATTGGAGCAAGCTTCCTGTAAATGCTCTCTCCACAAGTATTGAACAAGGTTTCTTTGCAAAACCTTTTAGAACTGGAATATATCAGCGGATATTGTCTATTCTTCGAGATGGAATTGTGATTGGAGATAAAAGATTCGAGTTTCTGGCTTTCTCGGCGAGTCAACTCCGATCAAATTCTGTTTGGATGTTTGCTTCAAATGACAGTGTAAAGGCAGAAGATATTAGAGAATGGATGGGTTGCTTCCACAAGATCCGCAGTGTATCTAAATGTGCAGCTAGGATGGGTCAGCTATTCAGTTCTTCAACGCAAACTCTTGTTGTCCCTCAACAGGATGTGGAGCTCATTCCTGACATTGAGACTTCTTCTGATGGTGTGAGTTACTGCTTCTCTGATGGTATTGGAAAGATTTCCTTATCTTTTGCCAGGCAAGTTGCTCAAAAGTGTGGACTGAATCACACTCCTTCAGCATTCCAAATTCGATATGGTGGATATAAAGGGGTGATAGCCGTTGACCGTAATTCTTTCCGGAAGCTGTCTCTACGTAGTAGTATGCTCAAATTTGAGTCAAACAACAGAATGCTTAATGTCACTAAATGGAGTTCCTCCATGCCCTGCTTTCTGAATCGAGAAATTATAACCCTCATGTCTACGCTAGGGGTAGAGGATGAAGCATTTGAAGCATTGCAACAGGAGCAATTGGATCTGTTAGGAAGGATGCGGAAAGAAAGAAATGTAGCACTAACTGCCCTAGAGAAACTAAGCGGTGCTGATTCCAATAACATTCTTGTTAAGATGTTGCTCCAAGGTTATGAGCCTAATCTGGAACCTTATCTCTCAATGATGCTTCAAGCACACTATGAGCACCACTTGACTGATTTAAAGAGTAGGTGCCGCATATATGTCCCAAAAGGAAGAATCCTGGTTGGGTGCTTGGATGAAACTGGTAGTTTAAACTATGGCCAAGTTTATGTTCGAATAACCATGACCAAAGCAGAGCAAGAAATGGGGCATCAGAATTTCTTCCAGAGAGTGGATGAGGCAACATGTATAGTAACAGGGAAGGTGGTTGTCACCAAAAATCCTTGTCTTCATCCTGGAGACGTCAGGGTACTTGAGGCTGTCTATGATGTGGGACTAGAGGAGAAGAATATGGTGGATTGCCTTGTATTTCCCCAGAAAGGAGAAAGGCCTCATCCAAATGAATGCTCCGGGGGTGATCTGGATGGAGATTTGTTTTTTATAAGTTGGGATAAAAGTCTTGTTCCTCCTCATACTGTACCTCCGATGGACTACTCTGCACGGAGACCTCGCATTATGGATCACGATGTGACTTTAGAGGAAATTCAAAAGTTCTTTGTGGATTACATGATAAATGATAATTTGGGTGCCATCTCTACTGCACATCTAGTTCATTCTGACCACGAACCAGAAAAAGCCCTGAGTAAAAAATGCCTGGAGTTGGCAGACCTGCACTCCATGGCTGTTGACTTTGCCAAAACTGGTGCACCAGCTGAAATGTCCTGGATTTTAAAACCAAGAGAATTTCCGGATTTCATGGAAAGGGTGGACAAACCGATGTACATCTCCGATGGGGCATTAGGAAAGCTATACCGTGCAATTCTTAGGTCAGTGGTTCAAGAACAAACAACTGTTGTCTGGTCAGAGCAGATGGCTCAAGCAGCTTATGACAGGGAGCTTGAAGCGCAAGGTTTCGAGTCCTTTCTTGACATTGCAGAGAGTCACAGGGACACATACATGGAGAAGATGGGACGTCTCATGAACTATTATGAAGCAGCGACTGAAGATGAAATACTGACTGGTAACCTCCGAAACCGTGCAGCCTATCTGCAGCGCGATAACAGGAGATATTTTGACTTGAAGGATCGAATCTTGCTGTCACTCAAGACCCTACAGAAGGAAGCAAAAGGATGGTTCGAAAGCAGCTGCAAGGTGAGTGAGCAGCAGCAGTTGGCCTCGGCATGGTACCATGTGACTTACAACTCATCTTATTTCCAGGAAGACATGAACTGCCTGAGCTTTCCATGGATTGTGGGCGACATTCTGCTCAACATCAAGTCTCTGAATAGCCGAAGAAACCGCACGGTCACAAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1135

Amino Acids

128.86

Weight (kDa)

5.8

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	22 - 105	6.5e-28	RdRP1/2, RRM domain
PH_RDR2	PF24823	122 - 273	1e-62	RDR2 PH-like domain
RdRP_helical	PF26252	289 - 374	1.2e-13	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	392 - 970	4.3e-191	RNA dependent RNA polymerase
RdRP_head	PF26253	991 - 1130	1.4e-39	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1925, 2531
AatII	GACGTC	2 cut(s)	2394, 3064
Acc36I	ACCTGC	1 cut(s)	2766
Acc65I	GGTACC	1 cut(s)	3273
AccB1I	GGYRCC	3 cut(s)	2178, 2675, 3273
AccB7I	CCANNNNNTGG	1 cut(s)	2320
AccI	GTMKAC	1 cut(s)	1937
AccII	CGCG	3 cut(s)	8, 195, 3144
AccIII	TCCGGA	2 cut(s)	1815, 2836
AclWI	GGATC	5 cut(s)	822, 1534, 1998, 2616, 3180
AcoI	YGGCCR	4 cut(s)	202, 326, 721, 2248
AcsI	RAATTY	6 cut(s)	1462, 1764, 1847, 2305, 2631, 2831
AcuI	CTGAAG	4 cut(s)	1007, 1239, 1737, 3111
AcyI	GRCGYC	3 cut(s)	423, 2391, 3061
AdeI	CACNNNGTG	1 cut(s)	2617
AfaI	GTAC	4 cut(s)	2400, 2568, 2870, 3275
AfiI	CCNNNNNNNGG	9 cut(s)	331, 433, 450, 1618, 2320, 2468, 2749, 3205, 3270
AflIII	ACRYGT	1 cut(s)	2333
AjnI	CCWGG	6 cut(s)	1712, 2208, 2383, 2742, 2810, 3303
AjuI	GAANNNNNNNTTGG	2 cut(s)	2244, 2276
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
Alw21I	GWGCWC	4 cut(s)	244, 1632, 2154, 2797
Alw44I	GTGCAC	1 cut(s)	2793
AlwI	GGATC	5 cut(s)	822, 1534, 1998, 2616, 3180
AlwNI	CAGNNNCTG	2 cut(s)	1030, 3089
Ama87I	CYCGRG	2 cut(s)	122, 443
Aor13HI	TCCGGA	2 cut(s)	1815, 2836
AoxI	GGCC	9 cut(s)	59, 136, 202, 326, 586, 721, 2248, 2477, 3261
ApaLI	GTGCAC	1 cut(s)	2793
ApoI	RAATTY	6 cut(s)	1462, 1764, 1847, 2305, 2631, 2831
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AseI	ATTAAT	1 cut(s)	1136
Asp700I	GAANNNNTTC	2 cut(s)	1696, 2309
Asp718I	GGTACC	1 cut(s)	3273
AspLEI	GCGC	3 cut(s)	8, 2995, 3144
AspS9I	GGNCC	7 cut(s)	60, 137, 334, 469, 587, 614, 1202
AsuC2I	CCSGG	4 cut(s)	325, 373, 428, 2500
AsuII	TTCGAA	2 cut(s)	2263, 3225
AvaI	CYCGRG	2 cut(s)	122, 443
AvaII	GGWCC	4 cut(s)	334, 469, 614, 1202
BaeGI	GKGCMC	1 cut(s)	2797
BalI	TGGCCA	2 cut(s)	723, 2250
BanI	GGYRCC	3 cut(s)	2178, 2675, 3273
BanII	GRGCYC	2 cut(s)	244, 1632
BarI	GAAGNNNNNNTAC	2 cut(s)	3084, 3116
BbsI	GAAGAC	4 cut(s)	265, 672, 2369, 3315
Bbv12I	GWGCWC	4 cut(s)	244, 1632, 2154, 2797
BceAI	ACGGC	1 cut(s)	1781
BciT130I	CCWGG	6 cut(s)	1714, 2210, 2385, 2744, 2812, 3305
BcnI	CCSGG	4 cut(s)	325, 373, 428, 2500
BfaI	CTAG	5 cut(s)	1566, 1943, 2039, 2426, 2696
BfmI	CTRYAG	5 cut(s)	693, 957, 1031, 3137, 3200
BfuAI	ACCTGC	1 cut(s)	2766
BglI	GCCNNNNNGGC	1 cut(s)	448
Bme18I	GGWCC	4 cut(s)	334, 469, 614, 1202
BmeT110I	CYCGRG	2 cut(s)	122, 443
BmgT120I	GGNCC	7 cut(s)	60, 137, 334, 469, 587, 614, 1202
BmiI	GGNNCC	8 cut(s)	139, 336, 470, 589, 2115, 2180, 2677, 3275
BmsI	GCATC	4 cut(s)	216, 1995, 2121, 2308
BpiI	GAAGAC	4 cut(s)	265, 672, 2369, 3315
BpmI	CTGGAG	3 cut(s)	428, 2406, 2765
Bpu10I	CCTNAGC	3 cut(s)	1198, 1206, 3323
Bpu14I	TTCGAA	2 cut(s)	2263, 3225
BpuEI	CTTGAG	5 cut(s)	563, 1025, 2423, 2949, 3176
BpuMI	CCSGG	4 cut(s)	325, 373, 428, 2500
BsaAI	YACGTR	1 cut(s)	1832
BsaBI	GATNNNNATC	3 cut(s)	648, 840, 2870
BsaHI	GRCGYC	3 cut(s)	423, 2391, 3061
BsaI	GGTCTC	2 cut(s)	386, 2587
BsaJI	CCNNGG	7 cut(s)	193, 323, 2092, 2499, 2766, 3264, 3332
BsaWI	WCCGGW	2 cut(s)	1815, 2836
BsaXI	ACNNNNNCTCC	6 cut(s)	491, 521, 2554, 2584, 2747, 2777
Bsc4I	CCNNNNNNNGG	9 cut(s)	331, 433, 450, 1618, 2320, 2468, 2749, 3205, 3270
Bse1I	ACTGG	6 cut(s)	188, 211, 1366, 2236, 2794, 3112
Bse3DI	GCAATG	2 cut(s)	1970, 3018
Bse8I	GATNNNNATC	3 cut(s)	648, 840, 2870
BseAI	TCCGGA	2 cut(s)	1815, 2836
BseBI	CCWGG	6 cut(s)	1714, 2210, 2385, 2744, 2812, 3305
BseDI	CCNNGG	7 cut(s)	193, 323, 2092, 2499, 2766, 3264, 3332
BseJI	GATNNNNATC	3 cut(s)	648, 840, 2870
BseLI	CCNNNNNNNGG	9 cut(s)	331, 433, 450, 1618, 2320, 2468, 2749, 3205, 3270
BseMI	GCAATG	2 cut(s)	1970, 3018
BseMII	CTCAG	7 cut(s)	257, 696, 846, 953, 1197, 2720, 3314
BseNI	ACTGG	6 cut(s)	188, 211, 1366, 2236, 2794, 3112
BseRI	GAGGAG	5 cut(s)	101, 244, 247, 2444, 2547
BseSI	GKGCMC	1 cut(s)	2797
BseX3I	CGGCCG	2 cut(s)	202, 326
BseYI	CCCAGC	1 cut(s)	741
BsgI	GTGCAG	7 cut(s)	73, 1100, 1581, 2571, 2673, 2744, 3147
Bsh1236I	CGCG	3 cut(s)	8, 195, 3144
Bsh1285I	CGRYCG	2 cut(s)	205, 329
BshFI	GGCC	9 cut(s)	61, 138, 204, 328, 588, 723, 2250, 2479, 3263
BshNI	GGYRCC	3 cut(s)	2178, 2675, 3273
BsiEI	CGRYCG	2 cut(s)	205, 329
BsiHKAI	GWGCWC	4 cut(s)	244, 1632, 2154, 2797
BsiHKCI	CYCGRG	2 cut(s)	122, 443
BsiSI	CCGG	7 cut(s)	325, 372, 427, 472, 1816, 2499, 2837
BslFI	GGGAC	6 cut(s)	265, 1595, 2177, 2436, 3050, 3072
BslI	CCNNNNNNNGG	9 cut(s)	331, 433, 450, 1618, 2320, 2468, 2749, 3205, 3270
BsmBI	CGTCTC	5 cut(s)	353, 701, 1121, 2382, 3068
BsmFI	GGGAC	6 cut(s)	265, 1595, 2177, 2436, 3050, 3072
BsmI	GAATGC	3 cut(s)	1757, 1872, 2498
BsnI	GGCC	9 cut(s)	61, 138, 204, 328, 588, 723, 2250, 2479, 3263
Bso31I	GGTCTC	2 cut(s)	386, 2587
BsoBI	CYCGRG	2 cut(s)	122, 443
Bsp119I	TTCGAA	2 cut(s)	2263, 3225
Bsp1286I	GDGCHC	4 cut(s)	244, 1632, 2154, 2797
Bsp13I	TCCGGA	2 cut(s)	1815, 2836
Bsp1407I	TGTACA	1 cut(s)	2868
Bsp143I	GATC	9 cut(s)	643, 814, 970, 1457, 1539, 1990, 2506, 2608, 3172
Bsp19I	CCATGG	2 cut(s)	2766, 3332
BspANI	GGCC	9 cut(s)	61, 138, 204, 328, 588, 723, 2250, 2479, 3263
BspCNI	CTCAG	7 cut(s)	256, 697, 847, 952, 1198, 2721, 3315
BspEI	TCCGGA	2 cut(s)	1815, 2836
BspFNI	CGCG	3 cut(s)	8, 195, 3144
BspHI	TCATGA	1 cut(s)	3066
BspLI	GGNNCC	8 cut(s)	139, 336, 470, 589, 2115, 2180, 2677, 3275
BspMAI	CTGCAG	3 cut(s)	961, 1035, 3141
BspMI	ACCTGC	1 cut(s)	2766
BspPI	GGATC	5 cut(s)	822, 1534, 1998, 2616, 3180
BspT104I	TTCGAA	2 cut(s)	2263, 3225
BspT107I	GGYRCC	3 cut(s)	2178, 2675, 3273
BspTNI	GGTCTC	2 cut(s)	386, 2587
BsrDI	GCAATG	2 cut(s)	1970, 3018
BsrGI	TGTACA	1 cut(s)	2868
BsrI	ACTGG	6 cut(s)	188, 211, 1366, 2236, 2794, 3112
BssECI	CCNNGG	7 cut(s)	193, 323, 2092, 2499, 2766, 3264, 3332
BssMI	GATC	9 cut(s)	643, 814, 970, 1457, 1539, 1990, 2506, 2608, 3172
BssNI	GRCGYC	3 cut(s)	423, 2391, 3061
BssT1I	CCWWGG	3 cut(s)	2092, 2766, 3332
Bst2UI	CCWGG	6 cut(s)	1714, 2210, 2385, 2744, 2812, 3305
Bst6I	CTCTTC	2 cut(s)	302, 1278
BstACI	GRCGYC	3 cut(s)	423, 2391, 3061
BstAPI	GCANNNNNTGC	2 cut(s)	1250, 2033
BstAUI	TGTACA	1 cut(s)	2868
BstBAI	YACGTR	1 cut(s)	1832
BstBI	TTCGAA	2 cut(s)	2263, 3225
BstC8I	GCNNGC	4 cut(s)	169, 369, 404, 1298
BstDSI	CCRYGG	3 cut(s)	193, 2766, 3332
BstEII	GGTNACC	1 cut(s)	3110
BstENI	CCTNNNNNAGG	1 cut(s)	3203
BstFNI	CGCG	3 cut(s)	8, 195, 3144
BstHHI	GCGC	3 cut(s)	8, 2995, 3144
BstKTI	GATC	9 cut(s)	646, 817, 973, 1460, 1542, 1993, 2509, 2611, 3175
BstMBI	GATC	9 cut(s)	643, 814, 970, 1457, 1539, 1990, 2506, 2608, 3172
BstMCI	CGRYCG	2 cut(s)	205, 329
BstNI	CCWGG	6 cut(s)	1714, 2210, 2385, 2744, 2812, 3305
BstNSI	RCATGY	1 cut(s)	2337
BstPI	GGTNACC	1 cut(s)	3110
BstSFI	CTRYAG	5 cut(s)	693, 957, 1031, 3137, 3200
BstSLI	GKGCMC	1 cut(s)	2797
BstSNI	TACGTA	1 cut(s)	1832
BstUI	CGCG	3 cut(s)	8, 195, 3144
BstV2I	GAAGAC	4 cut(s)	265, 672, 2369, 3315
BstX2I	RGATCY	3 cut(s)	814, 1539, 1990
BstYI	RGATCY	3 cut(s)	814, 1539, 1990
BstZI	CGGCCG	2 cut(s)	202, 326
BsuRI	GGCC	9 cut(s)	61, 138, 204, 328, 588, 723, 2250, 2479, 3263
BtgI	CCRYGG	3 cut(s)	193, 2766, 3332
BtsI	GCAGTG	2 cut(s)	1005, 1552
BtsIMutI	CAGTG	4 cut(s)	1005, 1498, 1552, 2925
BveI	ACCTGC	1 cut(s)	2766
Cac8I	GCNNGC	4 cut(s)	169, 369, 404, 1298
CaiI	CAGNNNCTG	2 cut(s)	1030, 3089
CciI	TCATGA	1 cut(s)	3066
CfoI	GCGC	3 cut(s)	8, 2995, 3144
Cfr13I	GGNCC	7 cut(s)	60, 137, 334, 469, 587, 614, 1202
Cfr42I	CCGCGG	1 cut(s)	196
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	4 cut(s)	2399, 2567, 2869, 3274
CspCI	CAANNNNNGTGG	2 cut(s)	1309, 1344
CviQI	GTAC	4 cut(s)	2399, 2567, 2869, 3274
DpnI	GATC	9 cut(s)	645, 816, 972, 1459, 1541, 1992, 2508, 2610, 3174
DpnII	GATC	9 cut(s)	643, 814, 970, 1457, 1539, 1990, 2506, 2608, 3172
DraI	TTTAAA	3 cut(s)	2169, 2241, 2820
DraIII	CACNNNGTG	1 cut(s)	2617
EaeI	YGGCCR	4 cut(s)	202, 326, 721, 2248
EagI	CGGCCG	2 cut(s)	202, 326
Eam1104I	CTCTTC	2 cut(s)	302, 1278
EarI	CTCTTC	2 cut(s)	302, 1278
Ecl136II	GAGCTC	2 cut(s)	242, 1630
EclXI	CGGCCG	2 cut(s)	202, 326
Eco105I	TACGTA	1 cut(s)	1832
Eco130I	CCWWGG	3 cut(s)	2092, 2766, 3332
Eco147I	AGGCCT	1 cut(s)	2479
Eco24I	GRGCYC	2 cut(s)	244, 1632
Eco31I	GGTCTC	2 cut(s)	386, 2587
Eco47I	GGWCC	4 cut(s)	334, 469, 614, 1202
Eco52I	CGGCCG	2 cut(s)	202, 326
Eco53kI	GAGCTC	2 cut(s)	242, 1630
Eco57I	CTGAAG	4 cut(s)	1007, 1239, 1737, 3111
Eco88I	CYCGRG	2 cut(s)	122, 443
Eco91I	GGTNACC	1 cut(s)	3110
EcoICRI	GAGCTC	2 cut(s)	242, 1630
EcoNI	CCTNNNNNAGG	1 cut(s)	3203
EcoO109I	RGGNCCY	2 cut(s)	614, 1202
EcoO65I	GGTNACC	1 cut(s)	3110
EcoRII	CCWGG	6 cut(s)	1712, 2208, 2383, 2742, 2810, 3303
EcoT14I	CCWWGG	3 cut(s)	2092, 2766, 3332
EcoT38I	GRGCYC	2 cut(s)	244, 1632
ErhI	CCWWGG	3 cut(s)	2092, 2766, 3332
Esp3I	CGTCTC	5 cut(s)	353, 701, 1121, 2382, 3068
FalI	AAGNNNNNCTT	4 cut(s)	653, 685, 1685, 1717
FaqI	GGGAC	6 cut(s)	265, 1595, 2177, 2436, 3050, 3072
FauI	CCCGC	4 cut(s)	200, 447, 468, 763
FauNDI	CATATG	1 cut(s)	1069
FblI	GTMKAC	1 cut(s)	1937
FriOI	GRGCYC	2 cut(s)	244, 1632
FspBI	CTAG	5 cut(s)	1566, 1943, 2039, 2426, 2696
GlaI	GCGC	3 cut(s)	7, 2994, 3143
GsaI	CCCAGC	1 cut(s)	745
GsuI	CTGGAG	3 cut(s)	428, 2406, 2765
HaeIII	GGCC	9 cut(s)	61, 138, 204, 328, 588, 723, 2250, 2479, 3263
HapII	CCGG	7 cut(s)	325, 372, 427, 472, 1816, 2499, 2837
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	3 cut(s)	8, 2995, 3144
Hin1I	GRCGYC	3 cut(s)	423, 2391, 3061
Hin6I	GCGC	3 cut(s)	6, 2993, 3142
HinP1I	GCGC	3 cut(s)	6, 2993, 3142
HincII	GTYRAC	4 cut(s)	385, 1451, 1801, 2776
HindII	GTYRAC	4 cut(s)	385, 1451, 1801, 2776
HindIII	AAGCTT	1 cut(s)	1298
HpaII	CCGG	7 cut(s)	325, 372, 427, 472, 1816, 2499, 2837
Hpy99I	CGWCG	2 cut(s)	356, 392
HpyAV	CCTTC	6 cut(s)	127, 1761, 1995, 2344, 3163, 3199
HpyCH4IV	ACGT	5 cut(s)	1114, 1149, 1831, 2391, 3061
HpySE526I	ACGT	5 cut(s)	1114, 1149, 1831, 2391, 3061
Hsp92I	GRCGYC	3 cut(s)	423, 2391, 3061
HspAI	GCGC	3 cut(s)	6, 2993, 3142
Kpn2I	TCCGGA	2 cut(s)	1815, 2836
KpnI	GGTACC	1 cut(s)	3277
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	9 cut(s)	643, 814, 970, 1457, 1539, 1990, 2506, 2608, 3172
LmnI	GCTCC	6 cut(s)	1293, 1627, 1981, 2094, 2501, 2983
LweI	GCATC	4 cut(s)	216, 1995, 2121, 2308
MaeI	CTAG	5 cut(s)	1566, 1943, 2039, 2426, 2696
MaeII	ACGT	5 cut(s)	1114, 1149, 1831, 2391, 3061
MalI	GATC	9 cut(s)	645, 816, 972, 1459, 1541, 1992, 2508, 2610, 3174
MboI	GATC	9 cut(s)	643, 814, 970, 1457, 1539, 1990, 2506, 2608, 3172
MfeI	CAATTG	1 cut(s)	1985
MflI	RGATCY	3 cut(s)	814, 1539, 1990
MhlI	GDGCHC	4 cut(s)	244, 1632, 2154, 2797
MlsI	TGGCCA	2 cut(s)	723, 2250
MluNI	TGGCCA	2 cut(s)	723, 2250
MlyI	GAGTC	9 cut(s)	81, 134, 137, 419, 533, 1456, 1862, 3014, 3037
Mox20I	TGGCCA	2 cut(s)	723, 2250
MroI	TCCGGA	2 cut(s)	1815, 2836
MroXI	GAANNNNTTC	2 cut(s)	1696, 2309
MscI	TGGCCA	2 cut(s)	723, 2250
MseI	TTAA	8 cut(s)	558, 921, 1136, 1872, 2079, 2168, 2240, 2819
MslI	CAYNNNNRTG	3 cut(s)	401, 2487, 3044
Msp20I	TGGCCA	2 cut(s)	723, 2250
MspA1I	CMGCKG	6 cut(s)	195, 331, 962, 1375, 2801, 3234
MspI	CCGG	7 cut(s)	325, 372, 427, 472, 1816, 2499, 2837
MssI	GTTTAAAC	1 cut(s)	2241
MunI	CAATTG	1 cut(s)	1985
Mva1269I	GAATGC	3 cut(s)	1757, 1872, 2498
MvaI	CCWGG	6 cut(s)	1714, 2210, 2385, 2744, 2812, 3305
MvnI	CGCG	3 cut(s)	8, 195, 3144
NciI	CCSGG	4 cut(s)	325, 373, 428, 2500
NcoI	CCATGG	2 cut(s)	2766, 3332
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	9 cut(s)	643, 814, 970, 1457, 1539, 1990, 2506, 2608, 3172
NlaIV	GGNNCC	8 cut(s)	139, 336, 470, 589, 2115, 2180, 2677, 3275
NmeAIII	GCCGAG	3 cut(s)	114, 1421, 3245
NmuCI	GTSAC	9 cut(s)	73, 482, 1876, 2359, 2617, 3029, 3186, 3280, 3394
NspI	RCATGY	1 cut(s)	2337
NspV	TTCGAA	2 cut(s)	2263, 3225
PaeR7I	CTCGAG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	3066
PceI	AGGCCT	1 cut(s)	2479
PciI	ACATGT	1 cut(s)	2333
PcsI	WCGNNNNNNNCGW	3 cut(s)	306, 357, 387
PctI	GAATGC	3 cut(s)	1757, 1872, 2498
PdmI	GAANNNNTTC	2 cut(s)	1696, 2309
PfeI	GAWTC	9 cut(s)	748, 887, 907, 1422, 1741, 1912, 2060, 2205, 3177
PflFI	GACNNNGTC	2 cut(s)	269, 712
PflMI	CCANNNNNTGG	1 cut(s)	2320
PfoI	TCCNGGA	3 cut(s)	2383, 2810, 3303
PleI	GAGTC	9 cut(s)	80, 133, 137, 418, 532, 1455, 1861, 3013, 3036
PmeI	GTTTAAAC	1 cut(s)	2241
PpsI	GAGTC	9 cut(s)	80, 133, 137, 418, 532, 1455, 1861, 3013, 3036
Ppu21I	YACGTR	1 cut(s)	1832
PpuMI	RGGWCCY	2 cut(s)	614, 1202
PscI	ACATGT	1 cut(s)	2333
PshBI	ATTAAT	1 cut(s)	1136
PsiI	TTATAA	2 cut(s)	1925, 2531
Psp124BI	GAGCTC	2 cut(s)	244, 1632
Psp5II	RGGWCCY	2 cut(s)	614, 1202
Psp6I	CCWGG	6 cut(s)	1712, 2208, 2383, 2742, 2810, 3303
PspEI	GGTNACC	1 cut(s)	3110
PspFI	CCCAGC	1 cut(s)	741
PspGI	CCWGG	6 cut(s)	1712, 2208, 2383, 2742, 2810, 3303
PspN4I	GGNNCC	8 cut(s)	139, 336, 470, 589, 2115, 2180, 2677, 3275
PspPI	GGNCC	7 cut(s)	60, 137, 334, 469, 587, 614, 1202
PspPPI	RGGWCCY	2 cut(s)	614, 1202
PspXI	VCTCGAGB	1 cut(s)	122
PstI	CTGCAG	3 cut(s)	961, 1035, 3141
PstNI	CAGNNNCTG	2 cut(s)	1030, 3089
PsuI	RGATCY	3 cut(s)	814, 1539, 1990
PsyI	GACNNNGTC	2 cut(s)	269, 712
PvuII	CAGCTG	2 cut(s)	2801, 3234
RsaI	GTAC	4 cut(s)	2400, 2568, 2870, 3275
RsaNI	GTAC	4 cut(s)	2399, 2567, 2869, 3274
RseI	CAYNNNNRTG	3 cut(s)	401, 2487, 3044
SacI	GAGCTC	2 cut(s)	244, 1632
SacII	CCGCGG	1 cut(s)	196
SaqAI	TTAA	8 cut(s)	558, 921, 1136, 1872, 2079, 2168, 2240, 2819
Sau3AI	GATC	9 cut(s)	643, 814, 970, 1457, 1539, 1990, 2506, 2608, 3172
Sau96I	GGNCC	7 cut(s)	60, 137, 334, 469, 587, 614, 1202
SchI	GAGTC	9 cut(s)	81, 134, 137, 419, 533, 1456, 1862, 3014, 3037
SduI	GDGCHC	4 cut(s)	244, 1632, 2154, 2797
SfaNI	GCATC	4 cut(s)	216, 1995, 2121, 2308
SfcI	CTRYAG	5 cut(s)	693, 957, 1031, 3137, 3200
Sfr274I	CTCGAG	1 cut(s)	122
Sfr303I	CCGCGG	1 cut(s)	196
SfuI	TTCGAA	2 cut(s)	2263, 3225
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	4 cut(s)	334, 469, 614, 1202
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	3 cut(s)	401, 2487, 3044
SmlI	CTYRAG	6 cut(s)	122, 578, 1040, 2402, 2964, 3191
SmoI	CTYRAG	6 cut(s)	122, 578, 1040, 2402, 2964, 3191
SnaBI	TACGTA	1 cut(s)	1832
SseBI	AGGCCT	1 cut(s)	2479
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	5 cut(s)	1566, 1943, 2039, 2426, 2696
SstI	GAGCTC	2 cut(s)	244, 1632
StuI	AGGCCT	1 cut(s)	2479
StyI	CCWWGG	3 cut(s)	2092, 2766, 3332
TaiI	ACGT	5 cut(s)	1117, 1152, 1834, 2394, 3064
TatI	WGTACW	1 cut(s)	2868
TauI	GCSGC	6 cut(s)	11, 198, 207, 331, 454, 2184
TfiI	GAWTC	9 cut(s)	748, 887, 907, 1422, 1741, 1912, 2060, 2205, 3177
Tru1I	TTAA	8 cut(s)	558, 921, 1136, 1872, 2079, 2168, 2240, 2819
Tru9I	TTAA	8 cut(s)	558, 921, 1136, 1872, 2079, 2168, 2240, 2819
TscAI	CASTG	4 cut(s)	1012, 1498, 1552, 2925
TseFI	GTSAC	9 cut(s)	73, 482, 1876, 2359, 2617, 3029, 3186, 3280, 3394
Tsp45I	GTSAC	9 cut(s)	73, 482, 1876, 2359, 2617, 3029, 3186, 3280, 3394
TspGWI	ACGGA	1 cut(s)	2605
TspRI	CASTG	4 cut(s)	1012, 1498, 1552, 2925
Tth111I	GACNNNGTC	2 cut(s)	269, 712
Van91I	CCANNNNNTGG	1 cut(s)	2320
VneI	GTGCAC	1 cut(s)	2793
VpaK11BI	GGWCC	4 cut(s)	334, 469, 614, 1202
VspI	ATTAAT	1 cut(s)	1136
XagI	CCTNNNNNAGG	1 cut(s)	3203
XapI	RAATTY	6 cut(s)	1462, 1764, 1847, 2305, 2631, 2831
XceI	RCATGY	1 cut(s)	2337
XcmI	CCANNNNNNNNNTGG	2 cut(s)	403, 1769
XhoI	CTCGAG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	1937
XmnI	GAANNNNTTC	2 cut(s)	1696, 2309
XspI	CTAG	5 cut(s)	1566, 1943, 2039, 2426, 2696
ZraI	GACGTC	2 cut(s)	2392, 3062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.