Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G11130 |
| fragaria_vesca | FvH4_5g05070 FvH4_5g05070 FvH4_5g05070 |
| malus_domestica | MD14G1184100.v1.1 |
| prunus_persica | Prupe.5G176700_v2.0.a1 |
| pyrus_communis | pycom14g15310 |
| rosa_chinensis | RchiOBHm_Chr7g0193931 |
| rosa_laevigata | RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353 |
| rosa_multiflora | Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00261680 |
| rosa_rugosa | Rorug07G0012900 |
| rosa_samantha | Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100 |
| rosa_wichuraiana | Rw7G011920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2733 |
| Acc65I | GGTACC | 1 cut(s) | 3240 |
| AccB1I | GGYRCC | 5 cut(s) | 10, 309, 2145, 2642, 3240 |
| AccBSI | CCGCTC | 1 cut(s) | 98 |
| AccI | GTMKAC | 1 cut(s) | 1904 |
| AccII | CGCG | 3 cut(s) | 8, 162, 3111 |
| AccIII | TCCGGA | 2 cut(s) | 1782, 2803 |
| AclWI | GGATC | 6 cut(s) | 789, 1501, 1965, 2583, 3147, 3311 |
| AcoI | YGGCCR | 3 cut(s) | 169, 293, 2215 |
| AcsI | RAATTY | 5 cut(s) | 1429, 1731, 1814, 2598, 2798 |
| AcuI | CTGAAG | 3 cut(s) | 1206, 1704, 2952 |
| AcyI | GRCGYC | 1 cut(s) | 11 |
| AfeI | AGCGCT | 1 cut(s) | 607 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 199, 268, 298, 708, 2435, 2716, 3172, 3237 |
| AflIII | ACRYGT | 1 cut(s) | 2300 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1030 |
| AjnI | CCWGG | 5 cut(s) | 305, 2175, 2350, 2709, 2777 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2211, 2243 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 140, 172 |
| Alw21I | GWGCWC | 3 cut(s) | 1599, 2121, 2764 |
| Alw44I | GTGCAC | 1 cut(s) | 2760 |
| AlwI | GGATC | 6 cut(s) | 789, 1501, 1965, 2583, 3147, 3311 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3226 |
| Ama87I | CYCGRG | 3 cut(s) | 89, 204, 410 |
| Aor13HI | TCCGGA | 2 cut(s) | 1782, 2803 |
| Aor51HI | AGCGCT | 1 cut(s) | 607 |
| ApaLI | GTGCAC | 1 cut(s) | 2760 |
| ApeKI | GCWGC | 7 cut(s) | 734, 923, 997, 1529, 3095, 3217, 3220 |
| ApoI | RAATTY | 5 cut(s) | 1429, 1731, 1814, 2598, 2798 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 101, 133 |
| AseI | ATTAAT | 1 cut(s) | 1103 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1663 |
| Asp718I | GGTACC | 1 cut(s) | 3240 |
| AspLEI | GCGC | 5 cut(s) | 8, 13, 532, 608, 3111 |
| AspS9I | GGNCC | 7 cut(s) | 27, 104, 202, 301, 554, 581, 1169 |
| AsuC2I | CCSGG | 5 cut(s) | 205, 206, 292, 340, 2870 |
| AsuHPI | GGTGA | 9 cut(s) | 34, 55, 175, 461, 527, 664, 1768, 2483, 3220 |
| AsuII | TTCGAA | 4 cut(s) | 596, 1451, 2230, 3192 |
| AvaI | CYCGRG | 3 cut(s) | 89, 204, 410 |
| AvaII | GGWCC | 2 cut(s) | 301, 1169 |
| BaeGI | GKGCMC | 1 cut(s) | 2764 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2517, 2550 |
| BanI | GGYRCC | 5 cut(s) | 10, 309, 2145, 2642, 3240 |
| BanII | GRGCYC | 2 cut(s) | 211, 1599 |
| BbsI | GAAGAC | 4 cut(s) | 109, 639, 2336, 3282 |
| Bbv12I | GWGCWC | 3 cut(s) | 1599, 2121, 2764 |
| BbvCI | CCTCAGC | 1 cut(s) | 3232 |
| BbvI | GCAGC | 7 cut(s) | 746, 910, 984, 1541, 3107, 3229, 3232 |
| BceAI | ACGGC | 3 cut(s) | 107, 184, 2230 |
| BciT130I | CCWGG | 5 cut(s) | 307, 2177, 2352, 2711, 2779 |
| BcnI | CCSGG | 5 cut(s) | 205, 206, 292, 340, 2870 |
| BfaI | CTAG | 4 cut(s) | 1533, 2006, 2393, 2663 |
| BfmI | CTRYAG | 4 cut(s) | 924, 998, 3104, 3167 |
| BfoI | RGCGCY | 2 cut(s) | 14, 609 |
| BfuAI | ACCTGC | 1 cut(s) | 2733 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 25 |
| BglII | AGATCT | 1 cut(s) | 1155 |
| Bme18I | GGWCC | 2 cut(s) | 301, 1169 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1030 |
| BmeT110I | CYCGRG | 3 cut(s) | 89, 204, 410 |
| BmgT120I | GGNCC | 7 cut(s) | 27, 104, 202, 301, 554, 581, 1169 |
| BmiI | GGNNCC | 9 cut(s) | 12, 106, 303, 311, 831, 1170, 2147, 2644, 3242 |
| BmrI | ACTGGG | 1 cut(s) | 1919 |
| BmsI | GCATC | 4 cut(s) | 183, 2088, 2275, 3366 |
| BmuI | ACTGGG | 1 cut(s) | 1919 |
| BpiI | GAAGAC | 4 cut(s) | 109, 639, 2336, 3282 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1055, 1087 |
| BpmI | CTGGAG | 2 cut(s) | 395, 2732 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1173, 3232, 3290 |
| Bpu14I | TTCGAA | 4 cut(s) | 596, 1451, 2230, 3192 |
| BpuEI | CTTGAG | 4 cut(s) | 992, 1010, 2390, 3143 |
| BpuMI | CCSGG | 5 cut(s) | 205, 206, 292, 340, 2870 |
| BsaAI | YACGTR | 2 cut(s) | 1799, 3404 |
| BsaBI | GATNNNNATC | 2 cut(s) | 615, 2837 |
| BsaHI | GRCGYC | 1 cut(s) | 11 |
| BsaI | GGTCTC | 3 cut(s) | 353, 2554, 2821 |
| BsaJI | CCNNGG | 7 cut(s) | 160, 204, 290, 305, 2059, 2733, 3299 |
| BsaWI | WCCGGW | 2 cut(s) | 1782, 2803 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 458, 488, 2521, 2551, 2714, 2744 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 199, 268, 298, 708, 2435, 2716, 3172, 3237 |
| Bse1I | ACTGG | 9 cut(s) | 155, 178, 1333, 1490, 1914, 2203, 2761, 3079, 3231 |
| Bse3DI | GCAATG | 1 cut(s) | 1937 |
| Bse8I | GATNNNNATC | 2 cut(s) | 615, 2837 |
| BseAI | TCCGGA | 2 cut(s) | 1782, 2803 |
| BseBI | CCWGG | 5 cut(s) | 307, 2177, 2352, 2711, 2779 |
| BseDI | CCNNGG | 7 cut(s) | 160, 204, 290, 305, 2059, 2733, 3299 |
| BseJI | GATNNNNATC | 2 cut(s) | 615, 2837 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 199, 268, 298, 708, 2435, 2716, 3172, 3237 |
| BseMI | GCAATG | 1 cut(s) | 1937 |
| BseNI | ACTGG | 9 cut(s) | 155, 178, 1333, 1490, 1914, 2203, 2761, 3079, 3231 |
| BseRI | GAGGAG | 2 cut(s) | 211, 214 |
| BseSI | GKGCMC | 1 cut(s) | 2764 |
| BseX3I | CGGCCG | 2 cut(s) | 169, 293 |
| BseXI | GCAGC | 7 cut(s) | 746, 910, 984, 1541, 3107, 3229, 3232 |
| BseYI | CCCAGC | 1 cut(s) | 708 |
| BsgI | GTGCAG | 6 cut(s) | 40, 1548, 2538, 2711, 2981, 3114 |
| Bsh1236I | CGCG | 3 cut(s) | 8, 162, 3111 |
| Bsh1285I | CGRYCG | 2 cut(s) | 172, 296 |
| BshNI | GGYRCC | 5 cut(s) | 10, 309, 2145, 2642, 3240 |
| BsiEI | CGRYCG | 2 cut(s) | 172, 296 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1599, 2121, 2764 |
| BsiHKCI | CYCGRG | 3 cut(s) | 89, 204, 410 |
| BsiSI | CCGG | 7 cut(s) | 20, 205, 292, 339, 1783, 2804, 2869 |
| BslFI | GGGAC | 8 cut(s) | 142, 199, 232, 818, 1562, 2144, 2403, 3017 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 199, 268, 298, 708, 2435, 2716, 3172, 3237 |
| BsmBI | CGTCTC | 2 cut(s) | 818, 1088 |
| BsmFI | GGGAC | 8 cut(s) | 142, 199, 232, 818, 1562, 2144, 2403, 3017 |
| BsmI | GAATGC | 4 cut(s) | 691, 1724, 1839, 2465 |
| Bso31I | GGTCTC | 3 cut(s) | 353, 2554, 2821 |
| BsoBI | CYCGRG | 3 cut(s) | 89, 204, 410 |
| Bsp119I | TTCGAA | 4 cut(s) | 596, 1451, 2230, 3192 |
| Bsp1286I | GDGCHC | 4 cut(s) | 211, 1599, 2121, 2764 |
| Bsp13I | TCCGGA | 2 cut(s) | 1782, 2803 |
| Bsp1407I | TGTACA | 2 cut(s) | 659, 2835 |
| Bsp19I | CCATGG | 2 cut(s) | 2733, 3299 |
| BspEI | TCCGGA | 2 cut(s) | 1782, 2803 |
| BspFNI | CGCG | 3 cut(s) | 8, 162, 3111 |
| BspHI | TCATGA | 3 cut(s) | 1119, 2578, 3033 |
| BspLI | GGNNCC | 9 cut(s) | 12, 106, 303, 311, 831, 1170, 2147, 2644, 3242 |
| BspMAI | CTGCAG | 3 cut(s) | 928, 1002, 3171 |
| BspMI | ACCTGC | 1 cut(s) | 2733 |
| BspPI | GGATC | 6 cut(s) | 789, 1501, 1965, 2583, 3147, 3311 |
| BspT104I | TTCGAA | 4 cut(s) | 596, 1451, 2230, 3192 |
| BspT107I | GGYRCC | 5 cut(s) | 10, 309, 2145, 2642, 3240 |
| BspTNI | GGTCTC | 3 cut(s) | 353, 2554, 2821 |
| BsrBI | CCGCTC | 1 cut(s) | 98 |
| BsrDI | GCAATG | 1 cut(s) | 1937 |
| BsrGI | TGTACA | 2 cut(s) | 659, 2835 |
| BsrI | ACTGG | 9 cut(s) | 155, 178, 1333, 1490, 1914, 2203, 2761, 3079, 3231 |
| BssECI | CCNNGG | 7 cut(s) | 160, 204, 290, 305, 2059, 2733, 3299 |
| BssNI | GRCGYC | 1 cut(s) | 11 |
| BssT1I | CCWWGG | 3 cut(s) | 2059, 2733, 3299 |
| Bst2UI | CCWGG | 5 cut(s) | 307, 2177, 2352, 2711, 2779 |
| Bst6I | CTCTTC | 5 cut(s) | 242, 269, 1245, 2132, 2391 |
| BstACI | GRCGYC | 1 cut(s) | 11 |
| BstAUI | TGTACA | 2 cut(s) | 659, 2835 |
| BstBAI | YACGTR | 2 cut(s) | 1799, 3404 |
| BstBI | TTCGAA | 4 cut(s) | 596, 1451, 2230, 3192 |
| BstC8I | GCNNGC | 4 cut(s) | 336, 371, 1265, 3215 |
| BstDSI | CCRYGG | 3 cut(s) | 160, 2733, 3299 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 266, 2433, 3170 |
| BstFNI | CGCG | 3 cut(s) | 8, 162, 3111 |
| BstH2I | RGCGCY | 2 cut(s) | 14, 609 |
| BstHHI | GCGC | 5 cut(s) | 8, 13, 532, 608, 3111 |
| BstMCI | CGRYCG | 2 cut(s) | 172, 296 |
| BstNI | CCWGG | 5 cut(s) | 307, 2177, 2352, 2711, 2779 |
| BstNSI | RCATGY | 2 cut(s) | 2155, 2304 |
| BstSFI | CTRYAG | 4 cut(s) | 924, 998, 3104, 3167 |
| BstSLI | GKGCMC | 1 cut(s) | 2764 |
| BstSNI | TACGTA | 1 cut(s) | 1799 |
| BstUI | CGCG | 3 cut(s) | 8, 162, 3111 |
| BstV1I | GCAGC | 7 cut(s) | 746, 910, 984, 1541, 3107, 3229, 3232 |
| BstV2I | GAAGAC | 4 cut(s) | 109, 639, 2336, 3282 |
| BstX2I | RGATCY | 4 cut(s) | 781, 1155, 1506, 1957 |
| BstYI | RGATCY | 4 cut(s) | 781, 1155, 1506, 1957 |
| BstZI | CGGCCG | 2 cut(s) | 169, 293 |
| BtgI | CCRYGG | 3 cut(s) | 160, 2733, 3299 |
| BtsI | GCAGTG | 3 cut(s) | 933, 972, 1519 |
| BtsIMutI | CAGTG | 8 cut(s) | 933, 972, 1465, 1519, 1572, 1907, 1994, 2892 |
| BveI | ACCTGC | 1 cut(s) | 2733 |
| Cac8I | GCNNGC | 4 cut(s) | 336, 371, 1265, 3215 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3226 |
| CciI | TCATGA | 3 cut(s) | 1119, 2578, 3033 |
| CfoI | GCGC | 5 cut(s) | 8, 13, 532, 608, 3111 |
| Cfr13I | GGNCC | 7 cut(s) | 27, 104, 202, 301, 554, 581, 1169 |
| Cfr42I | CCGCGG | 1 cut(s) | 163 |
| Cfr9I | CCCGGG | 1 cut(s) | 204 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1276, 1311 |
| DinI | GGCGCC | 1 cut(s) | 12 |
| DraI | TTTAAA | 1 cut(s) | 2208 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1030 |
| EaeI | YGGCCR | 3 cut(s) | 169, 293, 2215 |
| EagI | CGGCCG | 2 cut(s) | 169, 293 |
| Eam1104I | CTCTTC | 5 cut(s) | 242, 269, 1245, 2132, 2391 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1030 |
| EarI | CTCTTC | 5 cut(s) | 242, 269, 1245, 2132, 2391 |
| EciI | GGCGGA | 3 cut(s) | 182, 217, 248 |
| Ecl136II | GAGCTC | 1 cut(s) | 1597 |
| EclXI | CGGCCG | 2 cut(s) | 169, 293 |
| Eco105I | TACGTA | 1 cut(s) | 1799 |
| Eco130I | CCWWGG | 3 cut(s) | 2059, 2733, 3299 |
| Eco147I | AGGCCT | 1 cut(s) | 2446 |
| Eco24I | GRGCYC | 2 cut(s) | 211, 1599 |
| Eco31I | GGTCTC | 3 cut(s) | 353, 2554, 2821 |
| Eco47I | GGWCC | 2 cut(s) | 301, 1169 |
| Eco47III | AGCGCT | 1 cut(s) | 607 |
| Eco52I | CGGCCG | 2 cut(s) | 169, 293 |
| Eco53kI | GAGCTC | 1 cut(s) | 1597 |
| Eco57I | CTGAAG | 3 cut(s) | 1206, 1704, 2952 |
| Eco88I | CYCGRG | 3 cut(s) | 89, 204, 410 |
| EcoICRI | GAGCTC | 1 cut(s) | 1597 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 266, 2433, 3170 |
| EcoO109I | RGGNCCY | 2 cut(s) | 581, 1169 |
| EcoRII | CCWGG | 5 cut(s) | 305, 2175, 2350, 2709, 2777 |
| EcoT14I | CCWWGG | 3 cut(s) | 2059, 2733, 3299 |
| EcoT38I | GRGCYC | 2 cut(s) | 211, 1599 |
| EgeI | GGCGCC | 1 cut(s) | 12 |
| EheI | GGCGCC | 1 cut(s) | 12 |
| ErhI | CCWWGG | 3 cut(s) | 2059, 2733, 3299 |
| Esp3I | CGTCTC | 2 cut(s) | 818, 1088 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 620, 652, 1652, 1684, 2211, 2243 |
| FaqI | GGGAC | 8 cut(s) | 142, 199, 232, 818, 1562, 2144, 2403, 3017 |
| FauI | CCCGC | 3 cut(s) | 167, 435, 730 |
| FblI | GTMKAC | 1 cut(s) | 1904 |
| FriOI | GRGCYC | 2 cut(s) | 211, 1599 |
| FspBI | CTAG | 4 cut(s) | 1533, 2006, 2393, 2663 |
| GlaI | GCGC | 5 cut(s) | 7, 12, 531, 607, 3110 |
| GsaI | CCCAGC | 1 cut(s) | 712 |
| GsuI | CTGGAG | 2 cut(s) | 395, 2732 |
| HaeII | RGCGCY | 2 cut(s) | 14, 609 |
| HapII | CCGG | 7 cut(s) | 20, 205, 292, 339, 1783, 2804, 2869 |
| HhaI | GCGC | 5 cut(s) | 8, 13, 532, 608, 3111 |
| Hin1I | GRCGYC | 1 cut(s) | 11 |
| Hin6I | GCGC | 5 cut(s) | 6, 11, 530, 606, 3109 |
| HinP1I | GCGC | 5 cut(s) | 6, 11, 530, 606, 3109 |
| HincII | GTYRAC | 4 cut(s) | 352, 1418, 1768, 2743 |
| HindII | GTYRAC | 4 cut(s) | 352, 1418, 1768, 2743 |
| HindIII | AAGCTT | 2 cut(s) | 1265, 2937 |
| HpaII | CCGG | 7 cut(s) | 20, 205, 292, 339, 1783, 2804, 2869 |
| HphI | GGTGA | 9 cut(s) | 34, 55, 175, 461, 527, 664, 1768, 2483, 3220 |
| Hpy166II | GTNNAC | 8 cut(s) | 183, 352, 660, 1418, 1768, 1905, 2743, 2762 |
| Hpy8I | GTNNAC | 8 cut(s) | 183, 352, 660, 1418, 1768, 1905, 2743, 2762 |
| Hpy99I | CGWCG | 2 cut(s) | 128, 359 |
| HpyAV | CCTTC | 4 cut(s) | 1728, 2311, 3130, 3166 |
| HpyCH4IV | ACGT | 7 cut(s) | 535, 726, 891, 1081, 1798, 1989, 3403 |
| HpySE526I | ACGT | 7 cut(s) | 535, 726, 891, 1081, 1798, 1989, 3403 |
| Hsp92I | GRCGYC | 1 cut(s) | 11 |
| HspAI | GCGC | 5 cut(s) | 6, 11, 530, 606, 3109 |
| KasI | GGCGCC | 1 cut(s) | 10 |
| Kpn2I | TCCGGA | 2 cut(s) | 1782, 2803 |
| KpnI | GGTACC | 1 cut(s) | 3244 |
| KspI | CCGCGG | 1 cut(s) | 163 |
| LmnI | GCTCC | 5 cut(s) | 1108, 1594, 1948, 2061, 2950 |
| Lsp1109I | GCAGC | 7 cut(s) | 746, 910, 984, 1541, 3107, 3229, 3232 |
| LweI | GCATC | 4 cut(s) | 183, 2088, 2275, 3366 |
| MaeI | CTAG | 4 cut(s) | 1533, 2006, 2393, 2663 |
| MaeII | ACGT | 7 cut(s) | 535, 726, 891, 1081, 1798, 1989, 3403 |
| MbiI | CCGCTC | 1 cut(s) | 98 |
| MfeI | CAATTG | 2 cut(s) | 572, 1952 |
| MflI | RGATCY | 4 cut(s) | 781, 1155, 1506, 1957 |
| MhlI | GDGCHC | 4 cut(s) | 211, 1599, 2121, 2764 |
| Mly113I | GGCGCC | 1 cut(s) | 11 |
| MlyI | GAGTC | 7 cut(s) | 48, 101, 104, 386, 500, 1143, 2981 |
| MroI | TCCGGA | 2 cut(s) | 1782, 2803 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1663 |
| MseI | TTAA | 6 cut(s) | 525, 888, 1103, 1839, 2207, 2786 |
| MslI | CAYNNNNRTG | 3 cut(s) | 368, 2042, 2454 |
| MspA1I | CMGCKG | 5 cut(s) | 162, 298, 737, 1342, 2768 |
| MspI | CCGG | 7 cut(s) | 20, 205, 292, 339, 1783, 2804, 2869 |
| MteI | GCGCNGCGC | 1 cut(s) | 9 |
| MunI | CAATTG | 2 cut(s) | 572, 1952 |
| Mva1269I | GAATGC | 4 cut(s) | 691, 1724, 1839, 2465 |
| MvaI | CCWGG | 5 cut(s) | 307, 2177, 2352, 2711, 2779 |
| MvnI | CGCG | 3 cut(s) | 8, 162, 3111 |
| NarI | GGCGCC | 1 cut(s) | 11 |
| NciI | CCSGG | 5 cut(s) | 205, 206, 292, 340, 2870 |
| NcoI | CCATGG | 2 cut(s) | 2733, 3299 |
| NlaIV | GGNNCC | 9 cut(s) | 12, 106, 303, 311, 831, 1170, 2147, 2644, 3242 |
| NmeAIII | GCCGAG | 1 cut(s) | 81 |
| NmuCI | GTSAC | 9 cut(s) | 40, 449, 1127, 1843, 2584, 2916, 2996, 3153, 3247 |
| NspI | RCATGY | 2 cut(s) | 2155, 2304 |
| NspV | TTCGAA | 4 cut(s) | 596, 1451, 2230, 3192 |
| PaeR7I | CTCGAG | 1 cut(s) | 89 |
| PagI | TCATGA | 3 cut(s) | 1119, 2578, 3033 |
| PceI | AGGCCT | 1 cut(s) | 2446 |
| PciI | ACATGT | 1 cut(s) | 2300 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 273, 354 |
| PctI | GAATGC | 4 cut(s) | 691, 1724, 1839, 2465 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1663 |
| PfeI | GAWTC | 6 cut(s) | 715, 874, 1820, 1879, 2027, 2172 |
| PflFI | GACNNNGTC | 1 cut(s) | 113 |
| PfoI | TCCNGGA | 2 cut(s) | 2350, 2777 |
| PleI | GAGTC | 7 cut(s) | 47, 100, 104, 385, 499, 1142, 2980 |
| PluTI | GGCGCC | 1 cut(s) | 14 |
| PpsI | GAGTC | 7 cut(s) | 47, 100, 104, 385, 499, 1142, 2980 |
| Ppu21I | YACGTR | 2 cut(s) | 1799, 3404 |
| PpuMI | RGGWCCY | 1 cut(s) | 1169 |
| PscI | ACATGT | 1 cut(s) | 2300 |
| PshBI | ATTAAT | 1 cut(s) | 1103 |
| Psp124BI | GAGCTC | 1 cut(s) | 1599 |
| Psp5II | RGGWCCY | 1 cut(s) | 1169 |
| Psp6I | CCWGG | 5 cut(s) | 305, 2175, 2350, 2709, 2777 |
| PspFI | CCCAGC | 1 cut(s) | 708 |
| PspGI | CCWGG | 5 cut(s) | 305, 2175, 2350, 2709, 2777 |
| PspN4I | GGNNCC | 9 cut(s) | 12, 106, 303, 311, 831, 1170, 2147, 2644, 3242 |
| PspPI | GGNCC | 7 cut(s) | 27, 104, 202, 301, 554, 581, 1169 |
| PspPPI | RGGWCCY | 1 cut(s) | 1169 |
| PspXI | VCTCGAGB | 1 cut(s) | 89 |
| PstI | CTGCAG | 3 cut(s) | 928, 1002, 3171 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3226 |
| PsuI | RGATCY | 4 cut(s) | 781, 1155, 1506, 1957 |
| PsyI | GACNNNGTC | 1 cut(s) | 113 |
| PvuII | CAGCTG | 1 cut(s) | 2768 |
| RseI | CAYNNNNRTG | 3 cut(s) | 368, 2042, 2454 |
| SacI | GAGCTC | 1 cut(s) | 1599 |
| SacII | CCGCGG | 1 cut(s) | 163 |
| SaqAI | TTAA | 6 cut(s) | 525, 888, 1103, 1839, 2207, 2786 |
| Sau96I | GGNCC | 7 cut(s) | 27, 104, 202, 301, 554, 581, 1169 |
| SchI | GAGTC | 7 cut(s) | 48, 101, 104, 386, 500, 1143, 2981 |
| SduI | GDGCHC | 4 cut(s) | 211, 1599, 2121, 2764 |
| SfaNI | GCATC | 4 cut(s) | 183, 2088, 2275, 3366 |
| SfcI | CTRYAG | 4 cut(s) | 924, 998, 3104, 3167 |
| SfoI | GGCGCC | 1 cut(s) | 12 |
| Sfr274I | CTCGAG | 1 cut(s) | 89 |
| Sfr303I | CCGCGG | 1 cut(s) | 163 |
| SfuI | TTCGAA | 4 cut(s) | 596, 1451, 2230, 3192 |
| SgrBI | CCGCGG | 1 cut(s) | 163 |
| SinI | GGWCC | 2 cut(s) | 301, 1169 |
| SlaI | CTCGAG | 1 cut(s) | 89 |
| SmaI | CCCGGG | 1 cut(s) | 206 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 368, 2042, 2454 |
| SmlI | CTYRAG | 5 cut(s) | 89, 989, 1007, 2369, 3158 |
| SmoI | CTYRAG | 5 cut(s) | 89, 989, 1007, 2369, 3158 |
| SnaBI | TACGTA | 1 cut(s) | 1799 |
| SrfI | GCCCGGGC | 1 cut(s) | 206 |
| SseBI | AGGCCT | 1 cut(s) | 2446 |
| SspDI | GGCGCC | 1 cut(s) | 10 |
| SspI | AATATT | 1 cut(s) | 484 |
| SspMI | CTAG | 4 cut(s) | 1533, 2006, 2393, 2663 |
| SstI | GAGCTC | 1 cut(s) | 1599 |
| StuI | AGGCCT | 1 cut(s) | 2446 |
| StyI | CCWWGG | 3 cut(s) | 2059, 2733, 3299 |
| TaiI | ACGT | 7 cut(s) | 538, 729, 894, 1084, 1801, 1992, 3406 |
| TaqII | GACCGA | 1 cut(s) | 2845 |
| TatI | WGTACW | 3 cut(s) | 659, 2835, 3009 |
| TauI | GCSGC | 9 cut(s) | 11, 16, 19, 165, 174, 298, 734, 2151, 3357 |
| TfiI | GAWTC | 6 cut(s) | 715, 874, 1820, 1879, 2027, 2172 |
| Tru1I | TTAA | 6 cut(s) | 525, 888, 1103, 1839, 2207, 2786 |
| Tru9I | TTAA | 6 cut(s) | 525, 888, 1103, 1839, 2207, 2786 |
| TscAI | CASTG | 8 cut(s) | 933, 979, 1465, 1519, 1579, 1914, 2001, 2892 |
| TseFI | GTSAC | 9 cut(s) | 40, 449, 1127, 1843, 2584, 2916, 2996, 3153, 3247 |
| TseI | GCWGC | 7 cut(s) | 734, 923, 997, 1529, 3095, 3217, 3220 |
| Tsp45I | GTSAC | 9 cut(s) | 40, 449, 1127, 1843, 2584, 2916, 2996, 3153, 3247 |
| TspGWI | ACGGA | 3 cut(s) | 103, 484, 2572 |
| TspMI | CCCGGG | 1 cut(s) | 204 |
| TspRI | CASTG | 8 cut(s) | 933, 979, 1465, 1519, 1579, 1914, 2001, 2892 |
| Tth111I | GACNNNGTC | 1 cut(s) | 113 |
| VneI | GTGCAC | 1 cut(s) | 2760 |
| VpaK11BI | GGWCC | 2 cut(s) | 301, 1169 |
| VspI | ATTAAT | 1 cut(s) | 1103 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 266, 2433, 3170 |
| XapI | RAATTY | 5 cut(s) | 1429, 1731, 1814, 2598, 2798 |
| XceI | RCATGY | 2 cut(s) | 2155, 2304 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 370, 1736 |
| XhoI | CTCGAG | 1 cut(s) | 89 |
| XmaI | CCCGGG | 1 cut(s) | 204 |
| XmiI | GTMKAC | 1 cut(s) | 1904 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1663 |
| XspI | CTAG | 4 cut(s) | 1533, 2006, 2393, 2663 |