Rmu_co8480069.1_g000001
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8480069.1
Physical Location & Seq
Forward (+)
1 .. 2211
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8480069.1_g000001.1.cds

Sequence Viewer

Length: 1244 bp
gatgtggagctcattcctgacattgagacttcttctgatggtgtgagttactgcttctctgatggtattggaaagatttccttatcttttgccaggcaagttgctcaaaagtgcggactgaatcacactccttcggcattccaaattcgatatggtggatataaaggggtgatagccattgaccgtaattctttccggaagctgtctctacgtagtagtatgctcaaatttgagtcgaacaacagaatgcttaatgtcactaaatggagttcctccatgccctgctttctgaatcgagaaattataaccctcatgtctacgctaggggtagaggatgaagcatttgaagcattgcaacaggagcaattggatctgttaggaaggatgcggaaagatagaaatgtagcactaactgcccttgagaaactaagcggtgctgattccaataacattcttgttaagatgttgctccaaggttatgagcctaatctggaaccttatctctcaatgatgcttcaagcacactatgagcaccacttgactgatttaaagagtaggtgccgcatatatgtcccaaaaggaagaatcctggttgggtgcttggatgaaactggtagtttaaactatggccaagtttatgttcgaataaccatgaccaaagcagagcaagaaatggggcatcagaatttcttccagagggtggatgaggcaacatgtatagtaacagggaaggtggttgtcaccaaaaatccttgtcttcatcctggagacatcagggtacttgaggctgtctatgatgtgggactagaggagaagaatatggtggattgccttgtatttccccagaaaggggaaaggcctcatccaaatgaatgctccgggggtgatctggacggagatttgttttttataagttgggataaaagtcttgttcctcctcatactgtacctccgatggactactctgcacggagacctcgcaatatggatcacaatgtgactttagaggaaattcaaaagttctttgtggattacatgataaatgataatttgggtgccatctctactgcacatctagttcattctgaccacgaaccagaaaaagcccggagtaaaaaatgcctggagttggcagacctgcactccatggctgttgactttgccaaaactggtgcaccagctgaaatgtcctggattttaaaaccaagagaatttccggatttcatggaaagggtggacaaacc

Protein Analysis

415

Amino Acids

46.93

Weight (kDa)

5.76

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 305, 911
Acc36I ACCTGC 1 cut(s) 1146
AccB1I GGYRCC 2 cut(s) 558, 1055
AccB7I CCANNNNNTGG 1 cut(s) 700
AccI GTMKAC 1 cut(s) 317
AccIII TCCGGA 2 cut(s) 195, 1216
AciI CCGC 4 cut(s) 114, 388, 432, 562
AclWI GGATC 2 cut(s) 378, 996
AcoI YGGCCR 1 cut(s) 628
AcsI RAATTY 5 cut(s) 144, 227, 685, 1011, 1211
AdeI CACNNNGTG 1 cut(s) 997
AfaI GTAC 2 cut(s) 780, 948
AfiI CCNNNNNNNGG 5 cut(s) 700, 848, 849, 850, 1129
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 3 cut(s) 347, 518, 1016
AjnI CCWGG 5 cut(s) 92, 588, 763, 1122, 1190
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 3 cut(s) 10, 202, 1181
AluI AGCT 3 cut(s) 10, 202, 1181
Alw21I GWGCWC 3 cut(s) 12, 534, 1177
Alw26I GTCTC 4 cut(s) 20, 210, 762, 967
Alw44I GTGCAC 1 cut(s) 1173
AlwI GGATC 2 cut(s) 378, 996
Aor13HI TCCGGA 2 cut(s) 195, 1216
AoxI GGCC 2 cut(s) 628, 857
ApaLI GTGCAC 1 cut(s) 1173
ApoI RAATTY 5 cut(s) 144, 227, 685, 1011, 1211
Asp700I GAANNNNTTC 2 cut(s) 76, 689
AsuC2I CCSGG 2 cut(s) 880, 1108
AsuHPI GGTGA 3 cut(s) 181, 733, 896
AsuII TTCGAA 1 cut(s) 643
BaeGI GKGCMC 1 cut(s) 1177
BalI TGGCCA 1 cut(s) 630
BanI GGYRCC 2 cut(s) 558, 1055
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 749
Bbv12I GWGCWC 3 cut(s) 12, 534, 1177
BccI CCATC 4 cut(s) 32, 56, 949, 1067
BciT130I CCWGG 5 cut(s) 94, 590, 765, 1124, 1192
BcnI CCSGG 2 cut(s) 880, 1108
BcoDI GTCTC 4 cut(s) 20, 210, 762, 967
BfaI CTAG 3 cut(s) 323, 806, 1076
BfuAI ACCTGC 1 cut(s) 1146
BisI GCNGC 1 cut(s) 562
BlsI GCNGC 1 cut(s) 563
Bme1390I CCNGG 7 cut(s) 94, 590, 765, 880, 1108, 1124, 1192
BmiI GGNNCC 3 cut(s) 495, 560, 1057
BmrFI CCNGG 7 cut(s) 94, 590, 765, 880, 1108, 1124, 1192
BmsI GCATC 3 cut(s) 375, 501, 688
BpiI GAAGAC 1 cut(s) 749
BpmI CTGGAG 2 cut(s) 786, 1145
Bpu14I TTCGAA 1 cut(s) 643
BpuEI CTTGAG 2 cut(s) 440, 803
BpuMI CCSGG 2 cut(s) 880, 1108
BsaAI YACGTR 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 967
BsaJI CCNNGG 3 cut(s) 472, 879, 1146
BsaWI WCCGGW 2 cut(s) 195, 1216
BsaXI ACNNNNNCTCC 4 cut(s) 934, 964, 1127, 1157
Bsc4I CCNNNNNNNGG 5 cut(s) 700, 848, 849, 850, 1129
Bse1I ACTGG 2 cut(s) 616, 1174
Bse3DI GCAATG 1 cut(s) 350
BseAI TCCGGA 2 cut(s) 195, 1216
BseBI CCWGG 5 cut(s) 94, 590, 765, 1124, 1192
BseDI CCNNGG 3 cut(s) 472, 879, 1146
BseGI GGATG 6 cut(s) 340, 390, 610, 709, 760, 862
BseLI CCNNNNNNNGG 5 cut(s) 700, 848, 849, 850, 1129
BseMI GCAATG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 616, 1174
BseRI GAGGAG 2 cut(s) 824, 927
BseSI GKGCMC 1 cut(s) 1177
BsgI GTGCAG 3 cut(s) 951, 1053, 1124
BshFI GGCC 2 cut(s) 630, 859
BshNI GGYRCC 2 cut(s) 558, 1055
BsiHKAI GWGCWC 3 cut(s) 12, 534, 1177
BsiSI CCGG 4 cut(s) 196, 879, 1108, 1217
BslFI GGGAC 2 cut(s) 557, 816
BslI CCNNNNNNNGG 5 cut(s) 700, 848, 849, 850, 1129
BsmAI GTCTC 4 cut(s) 20, 210, 762, 967
BsmFI GGGAC 2 cut(s) 557, 816
BsmI GAATGC 3 cut(s) 137, 252, 878
BsnI GGCC 2 cut(s) 630, 859
Bso31I GGTCTC 1 cut(s) 967
Bsp119I TTCGAA 1 cut(s) 643
Bsp1286I GDGCHC 3 cut(s) 12, 534, 1177
Bsp13I TCCGGA 2 cut(s) 195, 1216
Bsp143I GATC 3 cut(s) 370, 886, 988
Bsp19I CCATGG 1 cut(s) 1146
BspACI CCGC 4 cut(s) 114, 388, 432, 562
BspANI GGCC 2 cut(s) 630, 859
BspEI TCCGGA 2 cut(s) 195, 1216
BspLI GGNNCC 3 cut(s) 495, 560, 1057
BspMI ACCTGC 1 cut(s) 1146
BspPI GGATC 2 cut(s) 378, 996
BspT104I TTCGAA 1 cut(s) 643
BspT107I GGYRCC 2 cut(s) 558, 1055
BspTNI GGTCTC 1 cut(s) 967
BsrDI GCAATG 1 cut(s) 350
BsrI ACTGG 2 cut(s) 616, 1174
BssECI CCNNGG 3 cut(s) 472, 879, 1146
BssMI GATC 3 cut(s) 370, 886, 988
BssT1I CCWWGG 2 cut(s) 472, 1146
Bst2UI CCWGG 5 cut(s) 94, 590, 765, 1124, 1192
Bst4CI ACNGT 2 cut(s) 185, 946
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 643
BstDEI CTNAG 1 cut(s) 428
BstDSI CCRYGG 1 cut(s) 1146
BstF5I GGATG 6 cut(s) 340, 390, 610, 709, 760, 862
BstKTI GATC 3 cut(s) 373, 889, 991
BstMAI GTCTC 4 cut(s) 20, 210, 762, 967
BstMBI GATC 3 cut(s) 370, 886, 988
BstMWI GCNNNNNNNGC 3 cut(s) 347, 361, 413
BstNI CCWGG 5 cut(s) 94, 590, 765, 1124, 1192
BstNSI RCATGY 1 cut(s) 717
BstSCI CCNGG 7 cut(s) 92, 588, 763, 878, 1106, 1122, 1190
BstSLI GKGCMC 1 cut(s) 1177
BstSNI TACGTA 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 2 cut(s) 630, 859
BtgI CCRYGG 1 cut(s) 1146
BtsCI GGATG 6 cut(s) 340, 390, 610, 709, 760, 862
BveI ACCTGC 1 cut(s) 1146
Csp6I GTAC 2 cut(s) 779, 947
CviAII CATG 7 cut(s) 277, 313, 652, 714, 1036, 1147, 1225
CviQI GTAC 2 cut(s) 779, 947
DdeI CTNAG 1 cut(s) 428
DpnI GATC 3 cut(s) 372, 888, 990
DpnII GATC 3 cut(s) 370, 886, 988
DraI TTTAAA 3 cut(s) 549, 621, 1200
DraIII CACNNNGTG 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 628
Ecl136II GAGCTC 1 cut(s) 10
Eco105I TACGTA 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 472, 1146
Eco147I AGGCCT 1 cut(s) 859
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 967
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 5 cut(s) 92, 588, 763, 1122, 1190
EcoT14I CCWWGG 2 cut(s) 472, 1146
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 2 cut(s) 472, 1146
FaeI CATG 7 cut(s) 280, 316, 655, 717, 1039, 1150, 1228
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FaqI GGGAC 2 cut(s) 557, 816
FatI CATG 7 cut(s) 276, 312, 651, 713, 1035, 1146, 1224
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 1 cut(s) 562
FokI GGATG 6 cut(s) 347, 397, 617, 716, 747, 849
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 562
FspBI CTAG 3 cut(s) 323, 806, 1076
GluI GCNGC 1 cut(s) 562
GsuI CTGGAG 2 cut(s) 786, 1145
HaeIII GGCC 2 cut(s) 630, 859
HapII CCGG 4 cut(s) 196, 879, 1108, 1217
Hin1II CATG 7 cut(s) 280, 316, 655, 717, 1039, 1150, 1228
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HinfI GANTC 5 cut(s) 121, 233, 292, 440, 585
HpaII CCGG 4 cut(s) 196, 879, 1108, 1217
HphI GGTGA 3 cut(s) 181, 733, 896
Hpy166II GTNNAC 4 cut(s) 318, 1156, 1175, 1237
Hpy188I TCNGA 6 cut(s) 37, 61, 291, 684, 954, 1087
Hpy188III TCNNGA 7 cut(s) 17, 196, 296, 491, 694, 890, 1217
Hpy8I GTNNAC 4 cut(s) 318, 1156, 1175, 1237
HpyAV CCTTC 3 cut(s) 141, 375, 724
HpyCH4III ACNGT 2 cut(s) 185, 946
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 5 cut(s) 355, 968, 1070, 1141, 1175
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 361, 413
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 7 cut(s) 280, 316, 655, 717, 1039, 1150, 1228
Kpn2I TCCGGA 2 cut(s) 195, 1216
Kzo9I GATC 3 cut(s) 370, 886, 988
LmnI GCTCC 4 cut(s) 7, 361, 474, 881
LweI GCATC 3 cut(s) 375, 501, 688
MaeI CTAG 3 cut(s) 323, 806, 1076
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 5 cut(s) 47, 256, 721, 739, 997
MalI GATC 3 cut(s) 372, 888, 990
MboI GATC 3 cut(s) 370, 886, 988
MboII GAAGA 5 cut(s) 24, 594, 682, 749, 826
MfeI CAATTG 1 cut(s) 365
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 3 cut(s) 12, 534, 1177
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 9 cut(s) 144, 187, 227, 300, 365, 685, 1011, 1048, 1211
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 1 cut(s) 242
Mox20I TGGCCA 1 cut(s) 630
MroI TCCGGA 2 cut(s) 195, 1216
MroXI GAANNNNTTC 2 cut(s) 76, 689
MscI TGGCCA 1 cut(s) 630
MseI TTAA 5 cut(s) 252, 459, 548, 620, 1199
MslI CAYNNNNRTG 1 cut(s) 867
Msp20I TGGCCA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 1181
MspI CCGG 4 cut(s) 196, 879, 1108, 1217
MspR9I CCNGG 7 cut(s) 94, 590, 765, 880, 1108, 1124, 1192
MssI GTTTAAAC 1 cut(s) 621
MunI CAATTG 1 cut(s) 365
Mva1269I GAATGC 3 cut(s) 137, 252, 878
MvaI CCWGG 5 cut(s) 94, 590, 765, 1124, 1192
MwoI GCNNNNNNNGC 3 cut(s) 347, 361, 413
NciI CCSGG 2 cut(s) 880, 1108
NcoI CCATGG 1 cut(s) 1146
NdeII GATC 3 cut(s) 370, 886, 988
NlaIII CATG 7 cut(s) 280, 316, 655, 717, 1039, 1150, 1228
NlaIV GGNNCC 3 cut(s) 495, 560, 1057
NmuCI GTSAC 3 cut(s) 256, 739, 997
NspI RCATGY 1 cut(s) 717
NspV TTCGAA 1 cut(s) 643
PceI AGGCCT 1 cut(s) 859
PciI ACATGT 1 cut(s) 713
PctI GAATGC 3 cut(s) 137, 252, 878
PdmI GAANNNNTTC 2 cut(s) 76, 689
PfeI GAWTC 4 cut(s) 121, 292, 440, 585
PflMI CCANNNNNTGG 1 cut(s) 700
PfoI TCCNGGA 2 cut(s) 763, 1190
PkrI GCNGC 1 cut(s) 563
PleI GAGTC 1 cut(s) 241
PmeI GTTTAAAC 1 cut(s) 621
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 212
PscI ACATGT 1 cut(s) 713
PsiI TTATAA 2 cut(s) 305, 911
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 5 cut(s) 92, 588, 763, 1122, 1190
PspGI CCWGG 5 cut(s) 92, 588, 763, 1122, 1190
PspN4I GGNNCC 3 cut(s) 495, 560, 1057
PsuI RGATCY 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 2 cut(s) 780, 948
RsaNI GTAC 2 cut(s) 779, 947
RseI CAYNNNNRTG 1 cut(s) 867
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 5 cut(s) 252, 459, 548, 620, 1199
SatI GCNGC 1 cut(s) 562
Sau3AI GATC 3 cut(s) 370, 886, 988
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 7 cut(s) 94, 590, 765, 880, 1108, 1124, 1192
SduI GDGCHC 3 cut(s) 12, 534, 1177
SfaNI GCATC 3 cut(s) 375, 501, 688
SfuI TTCGAA 1 cut(s) 643
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 2 cut(s) 419, 782
SmoI CTYRAG 2 cut(s) 419, 782
SnaBI TACGTA 1 cut(s) 212
Sse9I AATT 9 cut(s) 144, 187, 227, 300, 365, 685, 1011, 1048, 1211
SseBI AGGCCT 1 cut(s) 859
SsiI CCGC 4 cut(s) 114, 388, 432, 562
SspMI CTAG 3 cut(s) 323, 806, 1076
SstI GAGCTC 1 cut(s) 12
StuI AGGCCT 1 cut(s) 859
StyD4I CCNGG 7 cut(s) 92, 588, 763, 878, 1106, 1122, 1190
StyI CCWWGG 2 cut(s) 472, 1146
TaaI ACNGT 2 cut(s) 185, 946
TaiI ACGT 1 cut(s) 214
TaqI TCGA 4 cut(s) 148, 236, 295, 643
TasI AATT 9 cut(s) 144, 187, 227, 300, 365, 685, 1011, 1048, 1211
TauI GCSGC 1 cut(s) 564
TfiI GAWTC 4 cut(s) 121, 292, 440, 585
Tru1I TTAA 5 cut(s) 252, 459, 548, 620, 1199
Tru9I TTAA 5 cut(s) 252, 459, 548, 620, 1199
TseFI GTSAC 3 cut(s) 256, 739, 997
Tsp45I GTSAC 3 cut(s) 256, 739, 997
TspDTI ATGAA 6 cut(s) 351, 621, 749, 885, 1070, 1213
TspGWI ACGGA 2 cut(s) 909, 985
Van91I CCANNNNNTGG 1 cut(s) 700
VneI GTGCAC 1 cut(s) 1173
XapI RAATTY 5 cut(s) 144, 227, 685, 1011, 1211
XceI RCATGY 1 cut(s) 717
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 317
XmnI GAANNNNTTC 2 cut(s) 76, 689
XspI CTAG 3 cut(s) 323, 806, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.