Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G11130 |
| fragaria_vesca | FvH4_5g05070 FvH4_5g05070 FvH4_5g05070 |
| malus_domestica | MD14G1184100.v1.1 |
| prunus_persica | Prupe.5G176700_v2.0.a1 |
| pyrus_communis | pycom14g15310 |
| rosa_chinensis | RchiOBHm_Chr7g0193931 |
| rosa_laevigata | RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353 |
| rosa_multiflora | Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00261680 |
| rosa_rugosa | Rorug07G0012900 |
| rosa_samantha | Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100 |
| rosa_wichuraiana | Rw7G011920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 305, 911 |
| Acc36I | ACCTGC | 1 cut(s) | 1146 |
| AccB1I | GGYRCC | 2 cut(s) | 558, 1055 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 700 |
| AccI | GTMKAC | 1 cut(s) | 317 |
| AccIII | TCCGGA | 2 cut(s) | 195, 1216 |
| AciI | CCGC | 4 cut(s) | 114, 388, 432, 562 |
| AclWI | GGATC | 2 cut(s) | 378, 996 |
| AcoI | YGGCCR | 1 cut(s) | 628 |
| AcsI | RAATTY | 5 cut(s) | 144, 227, 685, 1011, 1211 |
| AdeI | CACNNNGTG | 1 cut(s) | 997 |
| AfaI | GTAC | 2 cut(s) | 780, 948 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 700, 848, 849, 850, 1129 |
| AflIII | ACRYGT | 1 cut(s) | 713 |
| AgsI | TTSAA | 3 cut(s) | 347, 518, 1016 |
| AjnI | CCWGG | 5 cut(s) | 92, 588, 763, 1122, 1190 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 624, 656 |
| AluBI | AGCT | 3 cut(s) | 10, 202, 1181 |
| AluI | AGCT | 3 cut(s) | 10, 202, 1181 |
| Alw21I | GWGCWC | 3 cut(s) | 12, 534, 1177 |
| Alw26I | GTCTC | 4 cut(s) | 20, 210, 762, 967 |
| Alw44I | GTGCAC | 1 cut(s) | 1173 |
| AlwI | GGATC | 2 cut(s) | 378, 996 |
| Aor13HI | TCCGGA | 2 cut(s) | 195, 1216 |
| AoxI | GGCC | 2 cut(s) | 628, 857 |
| ApaLI | GTGCAC | 1 cut(s) | 1173 |
| ApoI | RAATTY | 5 cut(s) | 144, 227, 685, 1011, 1211 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 76, 689 |
| AsuC2I | CCSGG | 2 cut(s) | 880, 1108 |
| AsuHPI | GGTGA | 3 cut(s) | 181, 733, 896 |
| AsuII | TTCGAA | 1 cut(s) | 643 |
| BaeGI | GKGCMC | 1 cut(s) | 1177 |
| BalI | TGGCCA | 1 cut(s) | 630 |
| BanI | GGYRCC | 2 cut(s) | 558, 1055 |
| BanII | GRGCYC | 1 cut(s) | 12 |
| BbsI | GAAGAC | 1 cut(s) | 749 |
| Bbv12I | GWGCWC | 3 cut(s) | 12, 534, 1177 |
| BccI | CCATC | 4 cut(s) | 32, 56, 949, 1067 |
| BciT130I | CCWGG | 5 cut(s) | 94, 590, 765, 1124, 1192 |
| BcnI | CCSGG | 2 cut(s) | 880, 1108 |
| BcoDI | GTCTC | 4 cut(s) | 20, 210, 762, 967 |
| BfaI | CTAG | 3 cut(s) | 323, 806, 1076 |
| BfuAI | ACCTGC | 1 cut(s) | 1146 |
| BisI | GCNGC | 1 cut(s) | 562 |
| BlsI | GCNGC | 1 cut(s) | 563 |
| Bme1390I | CCNGG | 7 cut(s) | 94, 590, 765, 880, 1108, 1124, 1192 |
| BmiI | GGNNCC | 3 cut(s) | 495, 560, 1057 |
| BmrFI | CCNGG | 7 cut(s) | 94, 590, 765, 880, 1108, 1124, 1192 |
| BmsI | GCATC | 3 cut(s) | 375, 501, 688 |
| BpiI | GAAGAC | 1 cut(s) | 749 |
| BpmI | CTGGAG | 2 cut(s) | 786, 1145 |
| Bpu14I | TTCGAA | 1 cut(s) | 643 |
| BpuEI | CTTGAG | 2 cut(s) | 440, 803 |
| BpuMI | CCSGG | 2 cut(s) | 880, 1108 |
| BsaAI | YACGTR | 1 cut(s) | 212 |
| BsaI | GGTCTC | 1 cut(s) | 967 |
| BsaJI | CCNNGG | 3 cut(s) | 472, 879, 1146 |
| BsaWI | WCCGGW | 2 cut(s) | 195, 1216 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 934, 964, 1127, 1157 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 700, 848, 849, 850, 1129 |
| Bse1I | ACTGG | 2 cut(s) | 616, 1174 |
| Bse3DI | GCAATG | 1 cut(s) | 350 |
| BseAI | TCCGGA | 2 cut(s) | 195, 1216 |
| BseBI | CCWGG | 5 cut(s) | 94, 590, 765, 1124, 1192 |
| BseDI | CCNNGG | 3 cut(s) | 472, 879, 1146 |
| BseGI | GGATG | 6 cut(s) | 340, 390, 610, 709, 760, 862 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 700, 848, 849, 850, 1129 |
| BseMI | GCAATG | 1 cut(s) | 350 |
| BseNI | ACTGG | 2 cut(s) | 616, 1174 |
| BseRI | GAGGAG | 2 cut(s) | 824, 927 |
| BseSI | GKGCMC | 1 cut(s) | 1177 |
| BsgI | GTGCAG | 3 cut(s) | 951, 1053, 1124 |
| BshFI | GGCC | 2 cut(s) | 630, 859 |
| BshNI | GGYRCC | 2 cut(s) | 558, 1055 |
| BsiHKAI | GWGCWC | 3 cut(s) | 12, 534, 1177 |
| BsiSI | CCGG | 4 cut(s) | 196, 879, 1108, 1217 |
| BslFI | GGGAC | 2 cut(s) | 557, 816 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 700, 848, 849, 850, 1129 |
| BsmAI | GTCTC | 4 cut(s) | 20, 210, 762, 967 |
| BsmFI | GGGAC | 2 cut(s) | 557, 816 |
| BsmI | GAATGC | 3 cut(s) | 137, 252, 878 |
| BsnI | GGCC | 2 cut(s) | 630, 859 |
| Bso31I | GGTCTC | 1 cut(s) | 967 |
| Bsp119I | TTCGAA | 1 cut(s) | 643 |
| Bsp1286I | GDGCHC | 3 cut(s) | 12, 534, 1177 |
| Bsp13I | TCCGGA | 2 cut(s) | 195, 1216 |
| Bsp143I | GATC | 3 cut(s) | 370, 886, 988 |
| Bsp19I | CCATGG | 1 cut(s) | 1146 |
| BspACI | CCGC | 4 cut(s) | 114, 388, 432, 562 |
| BspANI | GGCC | 2 cut(s) | 630, 859 |
| BspEI | TCCGGA | 2 cut(s) | 195, 1216 |
| BspLI | GGNNCC | 3 cut(s) | 495, 560, 1057 |
| BspMI | ACCTGC | 1 cut(s) | 1146 |
| BspPI | GGATC | 2 cut(s) | 378, 996 |
| BspT104I | TTCGAA | 1 cut(s) | 643 |
| BspT107I | GGYRCC | 2 cut(s) | 558, 1055 |
| BspTNI | GGTCTC | 1 cut(s) | 967 |
| BsrDI | GCAATG | 1 cut(s) | 350 |
| BsrI | ACTGG | 2 cut(s) | 616, 1174 |
| BssECI | CCNNGG | 3 cut(s) | 472, 879, 1146 |
| BssMI | GATC | 3 cut(s) | 370, 886, 988 |
| BssT1I | CCWWGG | 2 cut(s) | 472, 1146 |
| Bst2UI | CCWGG | 5 cut(s) | 94, 590, 765, 1124, 1192 |
| Bst4CI | ACNGT | 2 cut(s) | 185, 946 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 413 |
| BstBAI | YACGTR | 1 cut(s) | 212 |
| BstBI | TTCGAA | 1 cut(s) | 643 |
| BstDEI | CTNAG | 1 cut(s) | 428 |
| BstDSI | CCRYGG | 1 cut(s) | 1146 |
| BstF5I | GGATG | 6 cut(s) | 340, 390, 610, 709, 760, 862 |
| BstKTI | GATC | 3 cut(s) | 373, 889, 991 |
| BstMAI | GTCTC | 4 cut(s) | 20, 210, 762, 967 |
| BstMBI | GATC | 3 cut(s) | 370, 886, 988 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 347, 361, 413 |
| BstNI | CCWGG | 5 cut(s) | 94, 590, 765, 1124, 1192 |
| BstNSI | RCATGY | 1 cut(s) | 717 |
| BstSCI | CCNGG | 7 cut(s) | 92, 588, 763, 878, 1106, 1122, 1190 |
| BstSLI | GKGCMC | 1 cut(s) | 1177 |
| BstSNI | TACGTA | 1 cut(s) | 212 |
| BstV2I | GAAGAC | 1 cut(s) | 749 |
| BstX2I | RGATCY | 1 cut(s) | 370 |
| BstYI | RGATCY | 1 cut(s) | 370 |
| BsuRI | GGCC | 2 cut(s) | 630, 859 |
| BtgI | CCRYGG | 1 cut(s) | 1146 |
| BtsCI | GGATG | 6 cut(s) | 340, 390, 610, 709, 760, 862 |
| BveI | ACCTGC | 1 cut(s) | 1146 |
| Csp6I | GTAC | 2 cut(s) | 779, 947 |
| CviAII | CATG | 7 cut(s) | 277, 313, 652, 714, 1036, 1147, 1225 |
| CviQI | GTAC | 2 cut(s) | 779, 947 |
| DdeI | CTNAG | 1 cut(s) | 428 |
| DpnI | GATC | 3 cut(s) | 372, 888, 990 |
| DpnII | GATC | 3 cut(s) | 370, 886, 988 |
| DraI | TTTAAA | 3 cut(s) | 549, 621, 1200 |
| DraIII | CACNNNGTG | 1 cut(s) | 997 |
| EaeI | YGGCCR | 1 cut(s) | 628 |
| Ecl136II | GAGCTC | 1 cut(s) | 10 |
| Eco105I | TACGTA | 1 cut(s) | 212 |
| Eco130I | CCWWGG | 2 cut(s) | 472, 1146 |
| Eco147I | AGGCCT | 1 cut(s) | 859 |
| Eco24I | GRGCYC | 1 cut(s) | 12 |
| Eco31I | GGTCTC | 1 cut(s) | 967 |
| Eco53kI | GAGCTC | 1 cut(s) | 10 |
| EcoICRI | GAGCTC | 1 cut(s) | 10 |
| EcoRII | CCWGG | 5 cut(s) | 92, 588, 763, 1122, 1190 |
| EcoT14I | CCWWGG | 2 cut(s) | 472, 1146 |
| EcoT38I | GRGCYC | 1 cut(s) | 12 |
| ErhI | CCWWGG | 2 cut(s) | 472, 1146 |
| FaeI | CATG | 7 cut(s) | 280, 316, 655, 717, 1039, 1150, 1228 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 65, 97 |
| FaqI | GGGAC | 2 cut(s) | 557, 816 |
| FatI | CATG | 7 cut(s) | 276, 312, 651, 713, 1035, 1146, 1224 |
| FblI | GTMKAC | 1 cut(s) | 317 |
| Fnu4HI | GCNGC | 1 cut(s) | 562 |
| FokI | GGATG | 6 cut(s) | 347, 397, 617, 716, 747, 849 |
| FriOI | GRGCYC | 1 cut(s) | 12 |
| Fsp4HI | GCNGC | 1 cut(s) | 562 |
| FspBI | CTAG | 3 cut(s) | 323, 806, 1076 |
| GluI | GCNGC | 1 cut(s) | 562 |
| GsuI | CTGGAG | 2 cut(s) | 786, 1145 |
| HaeIII | GGCC | 2 cut(s) | 630, 859 |
| HapII | CCGG | 4 cut(s) | 196, 879, 1108, 1217 |
| Hin1II | CATG | 7 cut(s) | 280, 316, 655, 717, 1039, 1150, 1228 |
| HincII | GTYRAC | 1 cut(s) | 1156 |
| HindII | GTYRAC | 1 cut(s) | 1156 |
| HinfI | GANTC | 5 cut(s) | 121, 233, 292, 440, 585 |
| HpaII | CCGG | 4 cut(s) | 196, 879, 1108, 1217 |
| HphI | GGTGA | 3 cut(s) | 181, 733, 896 |
| Hpy166II | GTNNAC | 4 cut(s) | 318, 1156, 1175, 1237 |
| Hpy188I | TCNGA | 6 cut(s) | 37, 61, 291, 684, 954, 1087 |
| Hpy188III | TCNNGA | 7 cut(s) | 17, 196, 296, 491, 694, 890, 1217 |
| Hpy8I | GTNNAC | 4 cut(s) | 318, 1156, 1175, 1237 |
| HpyAV | CCTTC | 3 cut(s) | 141, 375, 724 |
| HpyCH4III | ACNGT | 2 cut(s) | 185, 946 |
| HpyCH4IV | ACGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 5 cut(s) | 355, 968, 1070, 1141, 1175 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 347, 361, 413 |
| HpyF3I | CTNAG | 1 cut(s) | 428 |
| HpySE526I | ACGT | 1 cut(s) | 211 |
| Hsp92II | CATG | 7 cut(s) | 280, 316, 655, 717, 1039, 1150, 1228 |
| Kpn2I | TCCGGA | 2 cut(s) | 195, 1216 |
| Kzo9I | GATC | 3 cut(s) | 370, 886, 988 |
| LmnI | GCTCC | 4 cut(s) | 7, 361, 474, 881 |
| LweI | GCATC | 3 cut(s) | 375, 501, 688 |
| MaeI | CTAG | 3 cut(s) | 323, 806, 1076 |
| MaeII | ACGT | 1 cut(s) | 211 |
| MaeIII | GTNAC | 5 cut(s) | 47, 256, 721, 739, 997 |
| MalI | GATC | 3 cut(s) | 372, 888, 990 |
| MboI | GATC | 3 cut(s) | 370, 886, 988 |
| MboII | GAAGA | 5 cut(s) | 24, 594, 682, 749, 826 |
| MfeI | CAATTG | 1 cut(s) | 365 |
| MflI | RGATCY | 1 cut(s) | 370 |
| MhlI | GDGCHC | 3 cut(s) | 12, 534, 1177 |
| MlsI | TGGCCA | 1 cut(s) | 630 |
| MluCI | AATT | 9 cut(s) | 144, 187, 227, 300, 365, 685, 1011, 1048, 1211 |
| MluNI | TGGCCA | 1 cut(s) | 630 |
| MlyI | GAGTC | 1 cut(s) | 242 |
| Mox20I | TGGCCA | 1 cut(s) | 630 |
| MroI | TCCGGA | 2 cut(s) | 195, 1216 |
| MroXI | GAANNNNTTC | 2 cut(s) | 76, 689 |
| MscI | TGGCCA | 1 cut(s) | 630 |
| MseI | TTAA | 5 cut(s) | 252, 459, 548, 620, 1199 |
| MslI | CAYNNNNRTG | 1 cut(s) | 867 |
| Msp20I | TGGCCA | 1 cut(s) | 630 |
| MspA1I | CMGCKG | 1 cut(s) | 1181 |
| MspI | CCGG | 4 cut(s) | 196, 879, 1108, 1217 |
| MspR9I | CCNGG | 7 cut(s) | 94, 590, 765, 880, 1108, 1124, 1192 |
| MssI | GTTTAAAC | 1 cut(s) | 621 |
| MunI | CAATTG | 1 cut(s) | 365 |
| Mva1269I | GAATGC | 3 cut(s) | 137, 252, 878 |
| MvaI | CCWGG | 5 cut(s) | 94, 590, 765, 1124, 1192 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 347, 361, 413 |
| NciI | CCSGG | 2 cut(s) | 880, 1108 |
| NcoI | CCATGG | 1 cut(s) | 1146 |
| NdeII | GATC | 3 cut(s) | 370, 886, 988 |
| NlaIII | CATG | 7 cut(s) | 280, 316, 655, 717, 1039, 1150, 1228 |
| NlaIV | GGNNCC | 3 cut(s) | 495, 560, 1057 |
| NmuCI | GTSAC | 3 cut(s) | 256, 739, 997 |
| NspI | RCATGY | 1 cut(s) | 717 |
| NspV | TTCGAA | 1 cut(s) | 643 |
| PceI | AGGCCT | 1 cut(s) | 859 |
| PciI | ACATGT | 1 cut(s) | 713 |
| PctI | GAATGC | 3 cut(s) | 137, 252, 878 |
| PdmI | GAANNNNTTC | 2 cut(s) | 76, 689 |
| PfeI | GAWTC | 4 cut(s) | 121, 292, 440, 585 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 700 |
| PfoI | TCCNGGA | 2 cut(s) | 763, 1190 |
| PkrI | GCNGC | 1 cut(s) | 563 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PmeI | GTTTAAAC | 1 cut(s) | 621 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| Ppu21I | YACGTR | 1 cut(s) | 212 |
| PscI | ACATGT | 1 cut(s) | 713 |
| PsiI | TTATAA | 2 cut(s) | 305, 911 |
| Psp124BI | GAGCTC | 1 cut(s) | 12 |
| Psp6I | CCWGG | 5 cut(s) | 92, 588, 763, 1122, 1190 |
| PspGI | CCWGG | 5 cut(s) | 92, 588, 763, 1122, 1190 |
| PspN4I | GGNNCC | 3 cut(s) | 495, 560, 1057 |
| PsuI | RGATCY | 1 cut(s) | 370 |
| PvuII | CAGCTG | 1 cut(s) | 1181 |
| RsaI | GTAC | 2 cut(s) | 780, 948 |
| RsaNI | GTAC | 2 cut(s) | 779, 947 |
| RseI | CAYNNNNRTG | 1 cut(s) | 867 |
| SacI | GAGCTC | 1 cut(s) | 12 |
| SaqAI | TTAA | 5 cut(s) | 252, 459, 548, 620, 1199 |
| SatI | GCNGC | 1 cut(s) | 562 |
| Sau3AI | GATC | 3 cut(s) | 370, 886, 988 |
| SchI | GAGTC | 1 cut(s) | 242 |
| ScrFI | CCNGG | 7 cut(s) | 94, 590, 765, 880, 1108, 1124, 1192 |
| SduI | GDGCHC | 3 cut(s) | 12, 534, 1177 |
| SfaNI | GCATC | 3 cut(s) | 375, 501, 688 |
| SfuI | TTCGAA | 1 cut(s) | 643 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 867 |
| SmlI | CTYRAG | 2 cut(s) | 419, 782 |
| SmoI | CTYRAG | 2 cut(s) | 419, 782 |
| SnaBI | TACGTA | 1 cut(s) | 212 |
| Sse9I | AATT | 9 cut(s) | 144, 187, 227, 300, 365, 685, 1011, 1048, 1211 |
| SseBI | AGGCCT | 1 cut(s) | 859 |
| SsiI | CCGC | 4 cut(s) | 114, 388, 432, 562 |
| SspMI | CTAG | 3 cut(s) | 323, 806, 1076 |
| SstI | GAGCTC | 1 cut(s) | 12 |
| StuI | AGGCCT | 1 cut(s) | 859 |
| StyD4I | CCNGG | 7 cut(s) | 92, 588, 763, 878, 1106, 1122, 1190 |
| StyI | CCWWGG | 2 cut(s) | 472, 1146 |
| TaaI | ACNGT | 2 cut(s) | 185, 946 |
| TaiI | ACGT | 1 cut(s) | 214 |
| TaqI | TCGA | 4 cut(s) | 148, 236, 295, 643 |
| TasI | AATT | 9 cut(s) | 144, 187, 227, 300, 365, 685, 1011, 1048, 1211 |
| TauI | GCSGC | 1 cut(s) | 564 |
| TfiI | GAWTC | 4 cut(s) | 121, 292, 440, 585 |
| Tru1I | TTAA | 5 cut(s) | 252, 459, 548, 620, 1199 |
| Tru9I | TTAA | 5 cut(s) | 252, 459, 548, 620, 1199 |
| TseFI | GTSAC | 3 cut(s) | 256, 739, 997 |
| Tsp45I | GTSAC | 3 cut(s) | 256, 739, 997 |
| TspDTI | ATGAA | 6 cut(s) | 351, 621, 749, 885, 1070, 1213 |
| TspGWI | ACGGA | 2 cut(s) | 909, 985 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 700 |
| VneI | GTGCAC | 1 cut(s) | 1173 |
| XapI | RAATTY | 5 cut(s) | 144, 227, 685, 1011, 1211 |
| XceI | RCATGY | 1 cut(s) | 717 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 149 |
| XmiI | GTMKAC | 1 cut(s) | 317 |
| XmnI | GAANNNNTTC | 2 cut(s) | 76, 689 |
| XspI | CTAG | 3 cut(s) | 323, 806, 1076 |