Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Forward (+)

57468889 .. 57472109

Gene Structure 3221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004232

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGTCTTCCTTTCCCACTACGTTACTCACTCTGCCTACCGACCACAAGAACTGGAAATCCCGCGGCTACGGCCGCATCCAGTTCACCACCCTAGCCCACAAAAACAGAGCTCAGTCTCTCTCCTCCTCCGCCGACCTCGTCTTCAGGTCCCACAACCTCCACCTCTTCGACACCCACGATGACATCATCCCCCGGCCACTGGACCCCAAGCACCGGCTCGACGACACCCTTTTGCACGCCGGGTTTGTCGTCAACGACGAGACCATGAGCGTGCTGGAATCATGGGAGGGCGTCCGGGCTTGGCATGGGTCATGCCCGAGAGGCGGCGGTCGAATGGAGGTTGCGTTTGAGAATATTGTGGAGTCTGTTGGGTGTTGTTTGGGTGGGGATAAAGTTAATGCTCTGCTTTTGAAGCTCAAGTTTGGCCCGAATATTTTTCGGAAAGTATCGGGGCCTAATGTTGCTTCGAAGTTCAGTGCTGATCGGTATCACTTTTGCAAGGAAGACTTTGATTATCTCAGGGTGAGGACTACAGATTTTTCTGAGACGAAGTCGATTGGCCATTATTCGACTTCGTTTTGCTGGGAGATTCAGGAGGACTTGTTGGTGGCGGGTGTTTTTATGGAGTTTCCGAGCTTTAGGGAAGATGTGGTGGATCTCATGTTTGAGGATGGTGATGGGTATGTTTCGGTGTCTAAGACTGTTCCGCTTGTGAAATGTGAAGCAGATTTAAAGGTACCTTATGACCAGACAACAGTTGTTTGTCTGCCAACTCCAGGCATTTTTTACTCAGCAGAGTGTGATCTGATTGAGTTCTTTGGTGGTTTGAGTCTGGACACTGCTAATGTGCTTCTTCAGAAGCTGCAGAAGCTTAAGACCACTTGTTATGACCCTCTATCATATGCAAAGGTGCAGTTGCAACTCTTAGAGAGGAACTCTAAGAAACGTCTCTCCCCCTATCAAAGATTAATGGAGCATAACGTTATGAGTTGTCATAGAGCCTTGATTACTCCATCAAAGATTTACTGCTTGGGTCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCTCAATATGCTTCAGATTTTATGAGGGTTACATTTGTTGAAGAGGATTGGAGCAAGCTTCCTGTAAATCTCTCTCCACAAGTATTGAACAAGAGTAAAAAATGCCTGGAGTTGGCAGACCTGCACTCCATGGCTGTTGACTTTGCCAAGATTGGTGCACCAGCTGAAATGTCCTGGATTTTAAAACCAAGAGAATTTCCGGATTTCATGGAAAGGGTGGACAAACCAATGTACATCTCCGATGGGGCATTAGGAAAGCTATACCGTGCAATTCTTAGCTCAGTGGTTCAAGAACAAACAACTGTTAGACGGTCAGAGCAGATGGCTCAAGCAGCTTATGACAGGGAGCTGGAAGCGCAAGGTTTCGAGTCCTTTCTTGACATTGCAGGGAGTCACAGGGACACATACATTGAGAAGATGAGAAGTCTCATGAACTATTATGAAGCAGCGACTGAAGATGAAATACTGACTGGTAACCTCCGAAACCGTGCAGCCTATCTGCAGCGGGATGACAGGAGACATTTTGACTTGAAGGATCGAATCTTGCTGTCACTCAAGACCCTACAGAAGGAAGCAAAAGGATGGTTCGAAAGCAGCTGCAAGGTGAGTGAGCAGCAGCAGTTGGCCTCGGCATGGTACCATGTGACTTACAACTCATCTTATTTCCAGGAAGACATGAACTGCCTGAGCTTTCCATGGATTGTGGGCGACATTCTGCTCAACATCAAGTCTCTGAACAGCCGAAGAAACCGCACGGTTACAAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

615

Amino Acids

70.17

Weight (kDa)

6.28

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	11 - 61	2.7e-12	RdRP1/2, RRM domain
PH_RDR2	PF24823	78 - 220	4.1e-42	RDR2 PH-like domain
RdRP	PF05183	336 - 377	3e-07	RNA dependent RNA polymerase
RdRP	PF05183	389 - 449	1.2e-13	RNA dependent RNA polymerase
RdRP_head	PF26253	470 - 609	4e-38	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1203
Acc65I	GGTACC	2 cut(s)	736, 1710
AccB1I	GGYRCC	2 cut(s)	736, 1710
AccII	CGCG	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	1273
AclI	AACGTT	1 cut(s)	981
AclWI	GGATC	2 cut(s)	663, 1617
AcoI	YGGCCR	3 cut(s)	70, 194, 559
AcsI	RAATTY	1 cut(s)	1268
AcuI	CTGAAG	4 cut(s)	127, 839, 1071, 1548
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	3 cut(s)	738, 1307, 1712
AfiI	CCNNNNNNNGG	7 cut(s)	199, 213, 323, 776, 1186, 1642, 1707
AflII	CTTAAG	1 cut(s)	872
AgsI	TTSAA	6 cut(s)	412, 1046, 1115, 1162, 1364, 1606
AjnI	CCWGG	4 cut(s)	775, 1179, 1247, 1740
AloI	GAACNNNNNNTCC	2 cut(s)	41, 73
Alw21I	GWGCWC	2 cut(s)	112, 1234
Alw26I	GTCTC	7 cut(s)	120, 254, 539, 953, 1505, 1585, 1809
Alw44I	GTGCAC	1 cut(s)	1230
AlwI	GGATC	2 cut(s)	663, 1617
AlwNI	CAGNNNCTG	2 cut(s)	862, 1526
Ama87I	CYCGRG	1 cut(s)	316
Aor13HI	TCCGGA	1 cut(s)	1273
AoxI	GGCC	6 cut(s)	70, 194, 424, 452, 559, 1698
ApaLI	GTGCAC	1 cut(s)	1230
ApeKI	GCWGC	9 cut(s)	862, 1406, 1520, 1565, 1576, 1668, 1671, 1687, 1690
ApoI	RAATTY	1 cut(s)	1268
AseI	ATTAAT	1 cut(s)	968
Asp718I	GGTACC	2 cut(s)	736, 1710
AspLEI	GCGC	1 cut(s)	1432
AspS9I	GGNCC	5 cut(s)	147, 202, 425, 452, 1034
AsuC2I	CCSGG	3 cut(s)	193, 241, 296
AsuHPI	GGTGA	4 cut(s)	76, 535, 686, 1690
AsuII	TTCGAA	2 cut(s)	467, 1662
AvaI	CYCGRG	1 cut(s)	316
AvaII	GGWCC	3 cut(s)	147, 202, 1034
BaeGI	GKGCMC	1 cut(s)	1234
BalI	TGGCCA	1 cut(s)	561
BanI	GGYRCC	2 cut(s)	736, 1710
BanII	GRGCYC	1 cut(s)	112
BarI	GAAGNNNNNNTAC	2 cut(s)	1521, 1553
BbsI	GAAGAC	3 cut(s)	133, 510, 1752
Bbv12I	GWGCWC	2 cut(s)	112, 1234
BbvI	GCAGC	9 cut(s)	849, 1418, 1532, 1577, 1588, 1658, 1680, 1699, 1702
BccI	CCATC	6 cut(s)	665, 671, 1021, 1310, 1390, 1650
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	4 cut(s)	777, 1181, 1249, 1742
BcnI	CCSGG	3 cut(s)	193, 241, 296
BcoDI	GTCTC	7 cut(s)	120, 254, 539, 953, 1505, 1585, 1809
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	4 cut(s)	531, 863, 1574, 1637
BfrI	CTTAAG	1 cut(s)	872
BfuAI	ACCTGC	1 cut(s)	1203
BglI	GCCNNNNNGGC	1 cut(s)	321
Bme1390I	CCNGG	7 cut(s)	193, 241, 296, 777, 1181, 1249, 1742
Bme18I	GGWCC	3 cut(s)	147, 202, 1034
BmeT110I	CYCGRG	1 cut(s)	316
BmgT120I	GGNCC	5 cut(s)	147, 202, 425, 452, 1034
BmiI	GGNNCC	6 cut(s)	149, 204, 453, 738, 1035, 1712
BmrFI	CCNGG	7 cut(s)	193, 241, 296, 777, 1181, 1249, 1742
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	3 cut(s)	133, 510, 1752
BplI	GAGNNNNNCTC	2 cut(s)	920, 952
BpmI	CTGGAG	2 cut(s)	759, 1202
Bpu10I	CCTNAGC	2 cut(s)	1038, 1760
Bpu14I	TTCGAA	2 cut(s)	467, 1662
BpuEI	CTTGAG	3 cut(s)	401, 1386, 1613
BpuMI	CCSGG	3 cut(s)	193, 241, 296
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	5 cut(s)	61, 191, 1203, 1701, 1769
BsaWI	WCCGGW	1 cut(s)	1273
BsaXI	ACNNNNNCTCC	6 cut(s)	329, 359, 587, 617, 1184, 1214
Bsc4I	CCNNNNNNNGG	7 cut(s)	199, 213, 323, 776, 1186, 1642, 1707
Bse118I	RCCGGY	1 cut(s)	213
Bse1I	ACTGG	4 cut(s)	56, 79, 204, 1549
Bse3DI	GCAATG	1 cut(s)	1455
Bse8I	GATNNNNATC	1 cut(s)	486
BseAI	TCCGGA	1 cut(s)	1273
BseBI	CCWGG	4 cut(s)	777, 1181, 1249, 1742
BseDI	CCNNGG	5 cut(s)	61, 191, 1203, 1701, 1769
BseGI	GGATG	5 cut(s)	75, 186, 676, 1588, 1661
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	7 cut(s)	199, 213, 323, 776, 1186, 1642, 1707
BseMI	GCAATG	1 cut(s)	1455
BseMII	CTCAG	7 cut(s)	125, 532, 534, 804, 1029, 1368, 1751
BseNI	ACTGG	4 cut(s)	56, 79, 204, 1549
BseRI	GAGGAG	2 cut(s)	112, 115
BseSI	GKGCMC	1 cut(s)	1234
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	9 cut(s)	849, 1418, 1532, 1577, 1588, 1658, 1680, 1699, 1702
BseYI	CCCAGC	1 cut(s)	582
BsgI	GTGCAG	3 cut(s)	932, 1181, 1584
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	2 cut(s)	73, 331
BshFI	GGCC	6 cut(s)	72, 196, 426, 454, 561, 1700
BshNI	GGYRCC	2 cut(s)	736, 1710
BsiEI	CGRYCG	2 cut(s)	73, 331
BsiHKAI	GWGCWC	2 cut(s)	112, 1234
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	5 cut(s)	193, 214, 240, 295, 1274
BslFI	GGGAC	2 cut(s)	133, 1487
BslI	CCNNNNNNNGG	7 cut(s)	199, 213, 323, 776, 1186, 1642, 1707
BsmAI	GTCTC	7 cut(s)	120, 254, 539, 953, 1505, 1585, 1809
BsmBI	CGTCTC	2 cut(s)	539, 953
BsmFI	GGGAC	2 cut(s)	133, 1487
BsnI	GGCC	6 cut(s)	72, 196, 426, 454, 561, 1700
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	316
Bsp119I	TTCGAA	2 cut(s)	467, 1662
Bsp1286I	GDGCHC	2 cut(s)	112, 1234
Bsp13I	TCCGGA	1 cut(s)	1273
Bsp1407I	TGTACA	1 cut(s)	1305
Bsp143I	GATC	4 cut(s)	481, 655, 802, 1609
Bsp19I	CCATGG	2 cut(s)	1203, 1769
BspANI	GGCC	6 cut(s)	72, 196, 426, 454, 561, 1700
BspCNI	CTCAG	7 cut(s)	124, 531, 535, 803, 1030, 1367, 1752
BspEI	TCCGGA	1 cut(s)	1273
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	1503
BspLI	GGNNCC	6 cut(s)	149, 204, 453, 738, 1035, 1712
BspMAI	CTGCAG	2 cut(s)	867, 1578
BspMI	ACCTGC	1 cut(s)	1203
BspPI	GGATC	2 cut(s)	663, 1617
BspT104I	TTCGAA	2 cut(s)	467, 1662
BspT107I	GGYRCC	2 cut(s)	736, 1710
BspTI	CTTAAG	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	1455
BsrFI	RCCGGY	1 cut(s)	213
BsrGI	TGTACA	1 cut(s)	1305
BsrI	ACTGG	4 cut(s)	56, 79, 204, 1549
BssAI	RCCGGY	1 cut(s)	213
BssECI	CCNNGG	5 cut(s)	61, 191, 1203, 1701, 1769
BssMI	GATC	4 cut(s)	481, 655, 802, 1609
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	1203, 1769
Bst2UI	CCWGG	4 cut(s)	777, 1181, 1249, 1742
Bst4CI	ACNGT	7 cut(s)	703, 757, 1340, 1378, 1386, 1562, 1831
Bst6I	CTCTTC	2 cut(s)	170, 1110
BstACI	GRCGYC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	872
BstAUI	TGTACA	1 cut(s)	1305
BstBI	TTCGAA	2 cut(s)	467, 1662
BstC8I	GCNNGC	3 cut(s)	237, 272, 1130
BstDSI	CCRYGG	3 cut(s)	61, 1203, 1769
BstEII	GGTNACC	1 cut(s)	1547
BstENI	CCTNNNNNAGG	1 cut(s)	1640
BstF5I	GGATG	5 cut(s)	75, 186, 676, 1588, 1661
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	1432
BstKTI	GATC	4 cut(s)	484, 658, 805, 1612
BstMAI	GTCTC	7 cut(s)	120, 254, 539, 953, 1505, 1585, 1809
BstMBI	GATC	4 cut(s)	481, 655, 802, 1609
BstMCI	CGRYCG	2 cut(s)	73, 331
BstMWI	GCNNNNNNNGC	8 cut(s)	69, 72, 321, 412, 868, 1082, 1406, 1429
BstNI	CCWGG	4 cut(s)	777, 1181, 1249, 1742
BstPI	GGTNACC	1 cut(s)	1547
BstSCI	CCNGG	7 cut(s)	191, 239, 294, 775, 1179, 1247, 1740
BstSFI	CTRYAG	4 cut(s)	531, 863, 1574, 1637
BstSLI	GKGCMC	1 cut(s)	1234
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	9 cut(s)	849, 1418, 1532, 1577, 1588, 1658, 1680, 1699, 1702
BstV2I	GAAGAC	3 cut(s)	133, 510, 1752
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	6 cut(s)	72, 196, 426, 454, 561, 1700
BtgI	CCRYGG	3 cut(s)	61, 1203, 1769
BtsCI	GGATG	5 cut(s)	75, 186, 676, 1588, 1661
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	4 cut(s)	197, 481, 837, 1362
BveI	ACCTGC	1 cut(s)	1203
Cac8I	GCNNGC	3 cut(s)	237, 272, 1130
CaiI	CAGNNNCTG	2 cut(s)	862, 1526
CciI	TCATGA	1 cut(s)	1503
CfoI	GCGC	1 cut(s)	1432
Cfr10I	RCCGGY	1 cut(s)	213
Cfr13I	GGNCC	5 cut(s)	147, 202, 425, 452, 1034
Cfr42I	CCGCGG	1 cut(s)	64
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	737, 1306, 1711
CspCI	CAANNNNNGTGG	2 cut(s)	1140, 1175
CviQI	GTAC	3 cut(s)	737, 1306, 1711
DpnI	GATC	4 cut(s)	483, 657, 804, 1611
DpnII	GATC	4 cut(s)	481, 655, 802, 1609
DraI	TTTAAA	2 cut(s)	732, 1257
EaeI	YGGCCR	3 cut(s)	70, 194, 559
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	170, 1110
EarI	CTCTTC	2 cut(s)	170, 1110
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	110
EclXI	CGGCCG	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	1203, 1769
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	3 cut(s)	147, 202, 1034
Eco52I	CGGCCG	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	110
Eco57I	CTGAAG	4 cut(s)	127, 839, 1071, 1548
Eco88I	CYCGRG	1 cut(s)	316
Eco91I	GGTNACC	1 cut(s)	1547
EcoICRI	GAGCTC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	1640
EcoO109I	RGGNCCY	3 cut(s)	147, 452, 1034
EcoO65I	GGTNACC	1 cut(s)	1547
EcoRII	CCWGG	4 cut(s)	775, 1179, 1247, 1740
EcoT14I	CCWWGG	2 cut(s)	1203, 1769
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	1203, 1769
Esp3I	CGTCTC	2 cut(s)	539, 953
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	2 cut(s)	133, 1487
FauI	CCCGC	3 cut(s)	68, 604, 1572
FauNDI	CATATG	1 cut(s)	901
FokI	GGATG	5 cut(s)	62, 173, 683, 1595, 1668
FriOI	GRGCYC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	1431
GsaI	CCCAGC	1 cut(s)	586
GsuI	CTGGAG	2 cut(s)	759, 1202
HaeIII	GGCC	6 cut(s)	72, 196, 426, 454, 561, 1700
HapII	CCGG	5 cut(s)	193, 214, 240, 295, 1274
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	1432
Hin1I	GRCGYC	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	1430
HinP1I	GCGC	1 cut(s)	1430
HincII	GTYRAC	2 cut(s)	253, 1213
HindII	GTYRAC	2 cut(s)	253, 1213
HindIII	AAGCTT	2 cut(s)	869, 1130
HinfI	GANTC	7 cut(s)	278, 362, 589, 829, 1442, 1465, 1614
HpaII	CCGG	5 cut(s)	193, 214, 240, 295, 1274
HphI	GGTGA	4 cut(s)	76, 535, 686, 1690
Hpy166II	GTNNAC	5 cut(s)	84, 253, 1213, 1232, 1294
Hpy188III	TCNNGA	8 cut(s)	593, 833, 1037, 1274, 1364, 1451, 1504, 1630
Hpy8I	GTNNAC	5 cut(s)	84, 253, 1213, 1232, 1294
Hpy99I	CGWCG	2 cut(s)	224, 260
HpyAV	CCTTC	2 cut(s)	1600, 1636
HpyCH4III	ACNGT	7 cut(s)	703, 757, 1340, 1378, 1386, 1562, 1831
HpyCH4IV	ACGT	3 cut(s)	20, 946, 981
HpyF10VI	GCNNNNNNNGC	8 cut(s)	69, 72, 321, 412, 868, 1082, 1406, 1429
HpySE526I	ACGT	3 cut(s)	20, 946, 981
Hsp92I	GRCGYC	1 cut(s)	291
HspAI	GCGC	1 cut(s)	1430
Kpn2I	TCCGGA	1 cut(s)	1273
KpnI	GGTACC	2 cut(s)	740, 1714
KspI	CCGCGG	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	481, 655, 802, 1609
LmnI	GCTCC	3 cut(s)	973, 1125, 1420
Lsp1109I	GCAGC	9 cut(s)	849, 1418, 1532, 1577, 1588, 1658, 1680, 1699, 1702
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	3 cut(s)	20, 946, 981
MaeIII	GTNAC	7 cut(s)	21, 1102, 1466, 1547, 1623, 1717, 1831
MalI	GATC	4 cut(s)	483, 657, 804, 1611
MboI	GATC	4 cut(s)	481, 655, 802, 1609
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	112, 1234
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	2 cut(s)	1268, 1344
MluNI	TGGCCA	1 cut(s)	561
MlyI	GAGTC	4 cut(s)	371, 838, 1451, 1474
Mox20I	TGGCCA	1 cut(s)	561
MroI	TCCGGA	1 cut(s)	1273
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	5 cut(s)	396, 731, 873, 968, 1256
MslI	CAYNNNNRTG	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	561
MspA1I	CMGCKG	4 cut(s)	63, 1238, 1579, 1671
MspCI	CTTAAG	1 cut(s)	872
MspI	CCGG	5 cut(s)	193, 214, 240, 295, 1274
MspR9I	CCNGG	7 cut(s)	193, 241, 296, 777, 1181, 1249, 1742
MvaI	CCWGG	4 cut(s)	777, 1181, 1249, 1742
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	8 cut(s)	69, 72, 321, 412, 868, 1082, 1406, 1429
NciI	CCSGG	3 cut(s)	193, 241, 296
NcoI	CCATGG	2 cut(s)	1203, 1769
NdeI	CATATG	1 cut(s)	901
NdeII	GATC	4 cut(s)	481, 655, 802, 1609
NlaIV	GGNNCC	6 cut(s)	149, 204, 453, 738, 1035, 1712
NmeAIII	GCCGAG	1 cut(s)	1682
NmuCI	GTSAC	3 cut(s)	1466, 1623, 1717
NspV	TTCGAA	2 cut(s)	467, 1662
PagI	TCATGA	1 cut(s)	1503
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 255
PfeI	GAWTC	3 cut(s)	278, 589, 1614
PflFI	GACNNNGTC	2 cut(s)	137, 550
PfoI	TCCNGGA	2 cut(s)	1247, 1740
PleI	GAGTC	4 cut(s)	370, 837, 1450, 1473
PpsI	GAGTC	4 cut(s)	370, 837, 1450, 1473
PpuMI	RGGWCCY	2 cut(s)	147, 1034
PshBI	ATTAAT	1 cut(s)	968
Psp124BI	GAGCTC	1 cut(s)	112
Psp1406I	AACGTT	1 cut(s)	981
Psp5II	RGGWCCY	2 cut(s)	147, 1034
Psp6I	CCWGG	4 cut(s)	775, 1179, 1247, 1740
PspEI	GGTNACC	1 cut(s)	1547
PspFI	CCCAGC	1 cut(s)	582
PspGI	CCWGG	4 cut(s)	775, 1179, 1247, 1740
PspN4I	GGNNCC	6 cut(s)	149, 204, 453, 738, 1035, 1712
PspPI	GGNCC	5 cut(s)	147, 202, 425, 452, 1034
PspPPI	RGGWCCY	2 cut(s)	147, 1034
PstI	CTGCAG	2 cut(s)	867, 1578
PstNI	CAGNNNCTG	2 cut(s)	862, 1526
PsuI	RGATCY	1 cut(s)	655
PsyI	GACNNNGTC	2 cut(s)	137, 550
PvuII	CAGCTG	2 cut(s)	1238, 1671
RsaI	GTAC	3 cut(s)	738, 1307, 1712
RsaNI	GTAC	3 cut(s)	737, 1306, 1711
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	112
SacII	CCGCGG	1 cut(s)	64
SaqAI	TTAA	5 cut(s)	396, 731, 873, 968, 1256
Sau3AI	GATC	4 cut(s)	481, 655, 802, 1609
Sau96I	GGNCC	5 cut(s)	147, 202, 425, 452, 1034
SchI	GAGTC	4 cut(s)	371, 838, 1451, 1474
ScrFI	CCNGG	7 cut(s)	193, 241, 296, 777, 1181, 1249, 1742
SduI	GDGCHC	2 cut(s)	112, 1234
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	4 cut(s)	531, 863, 1574, 1637
Sfr303I	CCGCGG	1 cut(s)	64
SfuI	TTCGAA	2 cut(s)	467, 1662
SgrBI	CCGCGG	1 cut(s)	64
SinI	GGWCC	3 cut(s)	147, 202, 1034
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	4 cut(s)	416, 872, 1401, 1628
SmoI	CTYRAG	4 cut(s)	416, 872, 1401, 1628
Sse9I	AATT	2 cut(s)	1268, 1344
SspI	AATATT	2 cut(s)	355, 433
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	7 cut(s)	191, 239, 294, 775, 1179, 1247, 1740
StyI	CCWWGG	2 cut(s)	1203, 1769
TaaI	ACNGT	7 cut(s)	703, 757, 1340, 1378, 1386, 1562, 1831
TaiI	ACGT	3 cut(s)	23, 949, 984
TaqI	TCGA	9 cut(s)	168, 219, 331, 467, 554, 569, 1440, 1612, 1662
TasI	AATT	2 cut(s)	1268, 1344
TatI	WGTACW	1 cut(s)	1305
TauI	GCSGC	3 cut(s)	66, 75, 327
TfiI	GAWTC	3 cut(s)	278, 589, 1614
Tru1I	TTAA	5 cut(s)	396, 731, 873, 968, 1256
Tru9I	TTAA	5 cut(s)	396, 731, 873, 968, 1256
TscAI	CASTG	4 cut(s)	204, 481, 844, 1362
TseFI	GTSAC	3 cut(s)	1466, 1623, 1717
TseI	GCWGC	9 cut(s)	862, 1406, 1520, 1565, 1576, 1668, 1671, 1687, 1690
Tsp45I	GTSAC	3 cut(s)	1466, 1623, 1717
TspDTI	ATGAA	5 cut(s)	1270, 1520, 1530, 1548, 1766
TspRI	CASTG	4 cut(s)	204, 481, 844, 1362
Tth111I	GACNNNGTC	2 cut(s)	137, 550
Vha464I	CTTAAG	1 cut(s)	872
VneI	GTGCAC	1 cut(s)	1230
VpaK11BI	GGWCC	3 cut(s)	147, 202, 1034
VspI	ATTAAT	1 cut(s)	968
XagI	CCTNNNNNAGG	1 cut(s)	1640
XapI	RAATTY	1 cut(s)	1268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.