Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031476.1

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 309

Gene Structure 308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031476.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 308 bp

atgttaagacttgggggattttggttttctcagctcaagtttggcccaaagatttttcggaaagtatcaggacctaatgtagcttccaagtttggtgctgatcggtatcacttttgcaaggaagactttgattatctgtgggtgaggactacagatttttctgagacaaagtcgattggccattcgacttcgttttgctgggagattcaggaggactttttggtggcgggtctttttatgaagtttccgagctttaggaaagatgtggtggatctcatgtttgaggatggtgatgggtatctttcggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

103

Amino Acids

12.0

Weight (kDa)

6.07

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	178
AluBI	AGCT	3 cut(s)	34, 83, 252
AluI	AGCT	3 cut(s)	34, 83, 252
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	43, 178
AspS9I	GGNCC	2 cut(s)	44, 71
AsuHPI	GGTGA	2 cut(s)	154, 302
AvaII	GGWCC	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	129
BccI	CCATC	2 cut(s)	281, 287
BcoDI	GTCTC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	44, 71
BpiI	GAAGAC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	20
BsaBI	GATNNNNATC	2 cut(s)	105, 297
Bse8I	GATNNNNATC	2 cut(s)	105, 297
BseGI	GGATG	1 cut(s)	292
BseJI	GATNNNNATC	2 cut(s)	105, 297
BseMII	CTCAG	2 cut(s)	44, 153
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	2 cut(s)	45, 180
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	45, 180
Bsp143I	GATC	2 cut(s)	100, 271
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	2 cut(s)	45, 180
BspCNI	CTCAG	2 cut(s)	43, 154
BspPI	GGATC	1 cut(s)	279
BssMI	GATC	2 cut(s)	100, 271
BstDEI	CTNAG	2 cut(s)	30, 162
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	103, 274
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	100, 271
BstSFI	CTRYAG	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	45, 180
BtsCI	GGATG	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	44, 71
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	5 cut(s)	34, 45, 83, 180, 252
CviKI_1	RGCY	5 cut(s)	34, 45, 83, 180, 252
DdeI	CTNAG	2 cut(s)	30, 162
DpnI	GATC	2 cut(s)	102, 273
DpnII	GATC	2 cut(s)	100, 271
EaeI	YGGCCR	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	71
FaeI	CATG	1 cut(s)	280
FaiI	YATR	2 cut(s)	239, 278
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	276
FauI	CCCGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	299
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	45, 180
Hin1II	CATG	1 cut(s)	280
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	2 cut(s)	154, 302
Hpy188I	TCNGA	3 cut(s)	60, 163, 249
Hpy188III	TCNNGA	2 cut(s)	69, 209
HpyCH4V	TGCA	1 cut(s)	117
HpyF3I	CTNAG	2 cut(s)	30, 162
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	100, 271
LpnPI	CCDG	3 cut(s)	54, 184, 194
MalI	GATC	2 cut(s)	102, 273
MboI	GATC	2 cut(s)	100, 271
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	180
MluNI	TGGCCA	1 cut(s)	180
MnlI	CCTC	3 cut(s)	138, 205, 277
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	180
NdeII	GATC	2 cut(s)	100, 271
NlaIII	CATG	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	205
PflFI	GACNNNGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	44, 71
PspPPI	RGGWCCY	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	100, 271
Sau96I	GGNCC	2 cut(s)	44, 71
SetI	ASST	4 cut(s)	36, 76, 85, 254
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SsiI	CCGC	1 cut(s)	227
TaqI	TCGA	2 cut(s)	173, 185
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	254
Tth111I	GACNNNGTC	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.