Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0007765

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG143900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGGGCGCTGCGGCGGCGGCGGAGGCGGAGAGGCCCACTGTCCGAGTCACCAACATCCCCTGCACCATCACCGCCAACGACCTCCTCACCTTCCTCGAGTCCACTCTCGGCCGCGACTCCATCTTCGCCATCGAAATCGCCAGCGACCACAAGAACTGGAAATCCCGCGGCTTCGGCCGCATCCAGTTCACCACCCTATCCCACAAAGCCAGAGCTCAGTCTCTCTCCTCCTCCGCCGACCTCGTCTTCAAGTCCCACAACCTCCGCCTCTTCGACACCAACGATGACATCATCCCCCGGCCGCTGGACCCCAAGCACCGGCTCGACGACACCCTTTTGCACGCCGGGTTTGTCGTCAACGACGAGACCATGAGCGTGCTGGAGTCGTGGGAGGGCGTCCGGGCTTGGGTCATGCCCGAGAGGCGGCGGGTCGAGTTTTGGGTCCGGCGGGGCGGTGACTGTTTCAAGATGGAGGTTGCATTTGAGAATATCGTGGAGTCTGTTGGGTGCTGTTTGGGTGGGGATAAAGTTAATGCTCTGCTTTTGAAGCTCAAGTTTGGCCCGAAGATTTTTCGGAAAGTATCAGGACCTAATGTAGCTTCCAAGTTTAGTGCTGATCGGTATCACTTTTGCAAGGAAGACTTTGATTATCTGTGGGTGAGGACTACAGATTTTTCTGAGACAAAGTCGATTGGCCATTCGACTTCATTTTGCTGGGAGATTCAGGAGGACTTTTTGGTGGCGGGTGTTTTTATGAAGTTTCCGAGCTTTAGGAAAGATGTGGTGGATCTCATGTTTGAGGATGGTGATGGGTATCTTTCGGTTTCTGAGACAGTTCCGCTTGTGAAATGTGAAGCAAACTCAGAGTTACCTTATGAGATTCTTTTCCAGCTTAATGCACTTGTTCATGCTCAGAAGATTAGCCTTGCTGCAGCGGAGTGTGATCTGATTGAGTTCTTTGGTGGTTTGAGTATGGACACTGCTAATGTGCTTCTTCAGAAGCTGCAGAAGCTCAAGACCACTTGTTATGACCCTCTATCATATGCAAAGGTGCAGTTGCAACTCTTAGAGGGGAACTCTAAGAAACGTCTCTCCCCCCATCAAAGATTAATGGAGCATAACGTTATGAGTTGTCATAGAGCCTTGATTACCCCATCAAAGATTTACTGCTTGGGTCCTGAGCTTGAAAAATCAAACTATGTTGTGAAGAACTTTGCTCAATATGCTTCAGATTTTATGAGGGTTACATTTGTTGAAGAGGATTGGAGCAAGCTTCCAGTAAATGCTCTCTCCACAAGTATTGAACAAGGTTTCTTTGCAAAACCTTTTAGAACTGGAATATATCAGCGGATATTGTCTATTCTTCGAGATGGAATTGTGATTGGAGATAAAAGATTTGAGTTTCTGGCTTTCTCGGCAAGTCAACTCCGATCAAATTCTGTTTGGATGTTTGCTTCAAATGACAGTGTAAAGGCAGAAGATATTAGAGAATGGATGGGTTGCTTCCACAAGATCCGCAGTGTATCTAAATGTGCAGCTAGGATGGGTCAGCTATTCAGTTCTTCAACGCAAACTCTTGTTGTCCCTCAACAGGATGTGGAGCTCATTCCTGACATTGAGACTTCTTCTGATGGTGTGAGTTACTGCTTCTCTGATGGTATTGGAAAGATTTCCTTATCTTTTGCCAGGCAAGTTGCTCAAAAGTGCGGACTGAATCACACTCCTTCGGCATTCCAAATTCGATATGGTGGATATAAAGGGGTGATAGCCATTGACCGTAATTCTTTCCGGAAGCTGTCTCTACGTAGTAGTATGCTCAAATTTGAGTCGAACAACAGAATGCTTAATGTCACTAAATGGAGTTCCTCCATGCCCTGCTTTCTGAATCGAGAAATTATAACCCTCATGTCTACGCTAGGGGTAGAGGATGAAGCATTTGAAGCATTGCAACAGGAGCAATTGGATCTGTTAGGAAGGATGCGGAAAGAAAGAAATGTAGCACTAACTGCCCTAGAGAAACTAAGCGGTGCTGATTCCAATAACATTCTTGTTAAGATGTTGCTCCAAGGTTATGAGCCTAATCTGGAACCTTATCTCTCAATGATGCTTCAAGCACACTATGAGCACCACTTGACTGATTTAAAGAGTAGGTGCCGCATATATGTCCCAAAAGGAAGAATCCTGGTTGGGTGCTTGGATGAAACTGGTAGTTTAAACTATGGCCAAGTTTATGTTCGAATAACCATGACCAAAGCAGAGCAAGAAATGGGGCATCAGAATTTCTTCCAGAGGGTGGATGAGGCAACATGTATAGTAACAGGGAAGGTGGTTGTCACCAAAAATCCTTGTCTTCATCCTGGAGACATCAGGGTACTTGAGGCTGTCTATGATGTGGGACTAGAGGAGAAGAATATGGTGGATTGCCTTGTATTTCCCCAGAAAGGAGAAAGGCCTCATCCAAATGAATGCTCCGGGGGTGATCTGGACGGAGATTTGTTTTTTATAAGTTGGGATAAAAGTCTTGTTCCTCCTCATACTGTAAATCCGATGGACTACTCTGCACGGAGACCTCGCAATATGGATCACGATGTGACTTTAGAGGAAATTCAAAAGTTCTTTGTGGATTACATGATAAATGATAATTTGGGTGCCATCTCTACTGCACATCTAGTTCATTCTGACCACGAACCAGAAAAAGCCCGGAGTAAAAAATGCCTGGAGTTGGCAGACCTGCACTCCATGGCTGTTGACTTTGCCAAAACTGGTGCACCAGCTGAAATGTCCTGGATTTTAAAACCAAGAGAATTTCCGGATTTCATGGAAAGGGTGGACAAACCGATGTACATCTCCGATGGGGCATTAGGAAAGCTATACCGTGCAATTCTTAGGTCAGTGGTTCAAGAACAAACAACTGTTGTCTGGTCAGAGCAGATGGCTCAAGCAGCTTATGACAGGGAGCTTGAAGCGCAAGGTTTCGAGTCCTTTCTTGACATTGCAGAGAGTCACAGGGACACATACATGGAGAAGATGGGAAGTCTCATGAACTATTATGAAGCAGCGACTGAAGATGAAATACTGACTGGTAACCTCCGAAACCGTGCAGCCTATCTGCAGCGCGATAACAGGAGATATTTTGACTTGAAGGATCGAATCTTGCTGTCACTCAAGACCCTACAGAAGGAAGCAAAAGGATGGTTCGAAAGCAGCTGCAAGGTGAGTGAGCAGCAGCAGTTGGCCTCGGCATGGTACCATGTGACTTACAACTCATCTTATTTCCAGGAAGACATGAACTGCCTGAGCTTTCCATGGATTGTGGGCGACATTCTGCTCAACATCAAGTCTCTGAATAGCCGAAGAAACCGCACGGTTACAAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

1126

Amino Acids

128.0

Weight (kDa)

6.09

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	13 - 96	3.1e-28	RdRP1/2, RRM domain
PH_RDR2	PF24823	113 - 264	4.5e-63	RDR2 PH-like domain
RdRP_helical	PF26252	280 - 365	2.6e-13	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	383 - 961	1.3e-191	RNA dependent RNA polymerase
RdRP_head	PF26253	982 - 1121	9.7e-40	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11130
fragaria_vesca	FvH4_5g05070 FvH4_5g05070 FvH4_5g05070
malus_domestica	MD14G1184100.v1.1
prunus_persica	Prupe.5G176700_v2.0.a1
pyrus_communis	pycom14g15310
rosa_chinensis	RchiOBHm_Chr7g0193931
rosa_laevigata	RLG00000004228 RLG00000004230 RLG00000004232 RLG00000034353
rosa_multiflora	Rmu_co8198578.1_g000001 Rmu_co8264681.1_g000001 Rmu_co8480069.1_g000001 Rmu_sc0002389.1_g000009 Rmu_sc0031476.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261680
rosa_rugosa	Rorug07G0012900
rosa_samantha	Rh7AG139700 Rh7BG140300 Rh7CG143900 Rh7DG141100
rosa_wichuraiana	Rw7G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1898, 2504
Acc36I	ACCTGC	1 cut(s)	2739
Acc65I	GGTACC	1 cut(s)	3246
AccB1I	GGYRCC	3 cut(s)	2151, 2648, 3246
AccB7I	CCANNNNNTGG	1 cut(s)	2293
AccI	GTMKAC	1 cut(s)	1910
AccII	CGCG	3 cut(s)	114, 168, 3117
AccIII	TCCGGA	2 cut(s)	1788, 2809
AclI	AACGTT	1 cut(s)	1122
AclWI	GGATC	5 cut(s)	795, 1507, 1971, 2589, 3153
AcoI	YGGCCR	5 cut(s)	109, 175, 299, 694, 2221
AcsI	RAATTY	6 cut(s)	1435, 1737, 1820, 2278, 2604, 2804
AcuI	CTGAAG	3 cut(s)	980, 1212, 3084
AcyI	GRCGYC	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	2590
AfaI	GTAC	3 cut(s)	2373, 2843, 3248
AflIII	ACRYGT	1 cut(s)	2306
AjnI	CCWGG	6 cut(s)	1685, 2181, 2356, 2715, 2783, 3276
AjuI	GAANNNNNNNTTGG	2 cut(s)	2217, 2249
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
Alw21I	GWGCWC	4 cut(s)	217, 1605, 2127, 2770
Alw44I	GTGCAC	1 cut(s)	2766
AlwI	GGATC	5 cut(s)	795, 1507, 1971, 2589, 3153
AlwNI	CAGNNNCTG	2 cut(s)	1003, 3062
Ama87I	CYCGRG	2 cut(s)	95, 416
Aor13HI	TCCGGA	2 cut(s)	1788, 2809
AoxI	GGCC	9 cut(s)	32, 109, 175, 299, 559, 694, 2221, 2450, 3234
ApaLI	GTGCAC	1 cut(s)	2766
ApoI	RAATTY	6 cut(s)	1435, 1737, 1820, 2278, 2604, 2804
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AseI	ATTAAT	1 cut(s)	1109
Asp700I	GAANNNNTTC	2 cut(s)	1669, 2282
Asp718I	GGTACC	1 cut(s)	3246
AspLEI	GCGC	3 cut(s)	8, 2968, 3117
AspS9I	GGNCC	6 cut(s)	33, 307, 442, 560, 587, 1175
AsuC2I	CCSGG	5 cut(s)	298, 346, 401, 2473, 2701
AsuII	TTCGAA	2 cut(s)	2236, 3198
AvaI	CYCGRG	2 cut(s)	95, 416
AvaII	GGWCC	4 cut(s)	307, 442, 587, 1175
BaeGI	GKGCMC	1 cut(s)	2770
BalI	TGGCCA	2 cut(s)	696, 2223
BanI	GGYRCC	3 cut(s)	2151, 2648, 3246
BanII	GRGCYC	2 cut(s)	217, 1605
BarI	GAAGNNNNNNTAC	2 cut(s)	3057, 3089
BbsI	GAAGAC	4 cut(s)	238, 645, 2342, 3288
Bbv12I	GWGCWC	4 cut(s)	217, 1605, 2127, 2770
BciT130I	CCWGG	6 cut(s)	1687, 2183, 2358, 2717, 2785, 3278
BcnI	CCSGG	5 cut(s)	298, 346, 401, 2473, 2701
BfaI	CTAG	5 cut(s)	1539, 1916, 2012, 2399, 2669
BfmI	CTRYAG	5 cut(s)	666, 930, 1004, 3110, 3173
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	2739
BglI	GCCNNNNNGGC	1 cut(s)	421
Bme18I	GGWCC	4 cut(s)	307, 442, 587, 1175
BmeT110I	CYCGRG	2 cut(s)	95, 416
BmgT120I	GGNCC	6 cut(s)	33, 307, 442, 560, 587, 1175
BmiI	GGNNCC	7 cut(s)	309, 443, 1176, 2088, 2153, 2650, 3248
BmsI	GCATC	4 cut(s)	189, 1968, 2094, 2281
BpiI	GAAGAC	4 cut(s)	238, 645, 2342, 3288
BplI	GAGNNNNNCTC	2 cut(s)	1061, 1093
BpmI	CTGGAG	3 cut(s)	401, 2379, 2738
Bpu10I	CCTNAGC	2 cut(s)	1179, 3296
Bpu14I	TTCGAA	2 cut(s)	2236, 3198
BpuEI	CTTGAG	5 cut(s)	536, 998, 2396, 2922, 3149
BpuMI	CCSGG	5 cut(s)	298, 346, 401, 2473, 2701
BsaAI	YACGTR	1 cut(s)	1805
BsaBI	GATNNNNATC	3 cut(s)	621, 813, 2843
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	2 cut(s)	359, 2560
BsaJI	CCNNGG	7 cut(s)	166, 296, 2065, 2472, 2739, 3237, 3305
BsaWI	WCCGGW	2 cut(s)	1788, 2809
BsaXI	ACNNNNNCTCC	2 cut(s)	2720, 2750
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	7 cut(s)	161, 184, 1277, 1339, 2209, 2767, 3085
Bse3DI	GCAATG	2 cut(s)	1943, 2991
Bse8I	GATNNNNATC	3 cut(s)	621, 813, 2843
BseAI	TCCGGA	2 cut(s)	1788, 2809
BseBI	CCWGG	6 cut(s)	1687, 2183, 2358, 2717, 2785, 3278
BseDI	CCNNGG	7 cut(s)	166, 296, 2065, 2472, 2739, 3237, 3305
BseJI	GATNNNNATC	3 cut(s)	621, 813, 2843
BseMI	GCAATG	2 cut(s)	1943, 2991
BseMII	CTCAG	7 cut(s)	230, 669, 819, 876, 926, 1170, 3287
BseNI	ACTGG	7 cut(s)	161, 184, 1277, 1339, 2209, 2767, 3085
BseRI	GAGGAG	5 cut(s)	74, 217, 220, 2417, 2520
BseSI	GKGCMC	1 cut(s)	2770
BseX3I	CGGCCG	3 cut(s)	109, 175, 299
BseYI	CCCAGC	1 cut(s)	714
BsgI	GTGCAG	7 cut(s)	46, 1073, 1554, 2544, 2646, 2717, 3120
Bsh1236I	CGCG	3 cut(s)	114, 168, 3117
Bsh1285I	CGRYCG	3 cut(s)	112, 178, 302
BshFI	GGCC	9 cut(s)	34, 111, 177, 301, 561, 696, 2223, 2452, 3236
BshNI	GGYRCC	3 cut(s)	2151, 2648, 3246
BsiEI	CGRYCG	3 cut(s)	112, 178, 302
BsiHKAI	GWGCWC	4 cut(s)	217, 1605, 2127, 2770
BsiHKCI	CYCGRG	2 cut(s)	95, 416
BsiSI	CCGG	9 cut(s)	298, 319, 345, 400, 445, 1789, 2472, 2701, 2810
BslFI	GGGAC	5 cut(s)	238, 1568, 2150, 2409, 3023
BsmBI	CGTCTC	1 cut(s)	1094
BsmFI	GGGAC	5 cut(s)	238, 1568, 2150, 2409, 3023
BsmI	GAATGC	3 cut(s)	1730, 1845, 2471
BsnI	GGCC	9 cut(s)	34, 111, 177, 301, 561, 696, 2223, 2452, 3236
Bso31I	GGTCTC	2 cut(s)	359, 2560
BsoBI	CYCGRG	2 cut(s)	95, 416
Bsp119I	TTCGAA	2 cut(s)	2236, 3198
Bsp1286I	GDGCHC	4 cut(s)	217, 1605, 2127, 2770
Bsp13I	TCCGGA	2 cut(s)	1788, 2809
Bsp1407I	TGTACA	1 cut(s)	2841
Bsp143I	GATC	9 cut(s)	616, 787, 943, 1430, 1512, 1963, 2479, 2581, 3145
Bsp19I	CCATGG	2 cut(s)	2739, 3305
BspANI	GGCC	9 cut(s)	34, 111, 177, 301, 561, 696, 2223, 2452, 3236
BspCNI	CTCAG	7 cut(s)	229, 670, 820, 875, 925, 1171, 3288
BspEI	TCCGGA	2 cut(s)	1788, 2809
BspFNI	CGCG	3 cut(s)	114, 168, 3117
BspHI	TCATGA	1 cut(s)	3039
BspLI	GGNNCC	7 cut(s)	309, 443, 1176, 2088, 2153, 2650, 3248
BspMAI	CTGCAG	3 cut(s)	934, 1008, 3114
BspMI	ACCTGC	1 cut(s)	2739
BspPI	GGATC	5 cut(s)	795, 1507, 1971, 2589, 3153
BspT104I	TTCGAA	2 cut(s)	2236, 3198
BspT107I	GGYRCC	3 cut(s)	2151, 2648, 3246
BspTNI	GGTCTC	2 cut(s)	359, 2560
BsrDI	GCAATG	2 cut(s)	1943, 2991
BsrFI	RCCGGY	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	2841
BsrI	ACTGG	7 cut(s)	161, 184, 1277, 1339, 2209, 2767, 3085
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	7 cut(s)	166, 296, 2065, 2472, 2739, 3237, 3305
BssMI	GATC	9 cut(s)	616, 787, 943, 1430, 1512, 1963, 2479, 2581, 3145
BssNI	GRCGYC	1 cut(s)	396
BssT1I	CCWWGG	3 cut(s)	2065, 2739, 3305
Bst2UI	CCWGG	6 cut(s)	1687, 2183, 2358, 2717, 2785, 3278
Bst6I	CTCTTC	2 cut(s)	275, 1251
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	2006
BstAUI	TGTACA	1 cut(s)	2841
BstBAI	YACGTR	1 cut(s)	1805
BstBI	TTCGAA	2 cut(s)	2236, 3198
BstC8I	GCNNGC	4 cut(s)	142, 342, 377, 1271
BstDSI	CCRYGG	3 cut(s)	166, 2739, 3305
BstEII	GGTNACC	1 cut(s)	3083
BstENI	CCTNNNNNAGG	1 cut(s)	3176
BstFNI	CGCG	3 cut(s)	114, 168, 3117
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	3 cut(s)	8, 2968, 3117
BstKTI	GATC	9 cut(s)	619, 790, 946, 1433, 1515, 1966, 2482, 2584, 3148
BstMBI	GATC	9 cut(s)	616, 787, 943, 1430, 1512, 1963, 2479, 2581, 3145
BstMCI	CGRYCG	3 cut(s)	112, 178, 302
BstNI	CCWGG	6 cut(s)	1687, 2183, 2358, 2717, 2785, 3278
BstNSI	RCATGY	1 cut(s)	2310
BstPI	GGTNACC	1 cut(s)	3083
BstSFI	CTRYAG	5 cut(s)	666, 930, 1004, 3110, 3173
BstSLI	GKGCMC	1 cut(s)	2770
BstSNI	TACGTA	1 cut(s)	1805
BstUI	CGCG	3 cut(s)	114, 168, 3117
BstV2I	GAAGAC	4 cut(s)	238, 645, 2342, 3288
BstX2I	RGATCY	3 cut(s)	787, 1512, 1963
BstYI	RGATCY	3 cut(s)	787, 1512, 1963
BstZI	CGGCCG	3 cut(s)	109, 175, 299
BsuRI	GGCC	9 cut(s)	34, 111, 177, 301, 561, 696, 2223, 2452, 3236
BtgI	CCRYGG	3 cut(s)	166, 2739, 3305
BtsI	GCAGTG	2 cut(s)	978, 1525
BtsIMutI	CAGTG	5 cut(s)	36, 978, 1471, 1525, 2898
BveI	ACCTGC	1 cut(s)	2739
Cac8I	GCNNGC	4 cut(s)	142, 342, 377, 1271
CaiI	CAGNNNCTG	2 cut(s)	1003, 3062
CciI	TCATGA	1 cut(s)	3039
CfoI	GCGC	3 cut(s)	8, 2968, 3117
Cfr10I	RCCGGY	1 cut(s)	318
Cfr13I	GGNCC	6 cut(s)	33, 307, 442, 560, 587, 1175
Cfr42I	CCGCGG	1 cut(s)	169
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	3 cut(s)	2372, 2842, 3247
CspCI	CAANNNNNGTGG	2 cut(s)	1282, 1317
CviQI	GTAC	3 cut(s)	2372, 2842, 3247
DpnI	GATC	9 cut(s)	618, 789, 945, 1432, 1514, 1965, 2481, 2583, 3147
DpnII	GATC	9 cut(s)	616, 787, 943, 1430, 1512, 1963, 2479, 2581, 3145
DraI	TTTAAA	3 cut(s)	2142, 2214, 2793
DraIII	CACNNNGTG	1 cut(s)	2590
EaeI	YGGCCR	5 cut(s)	109, 175, 299, 694, 2221
EagI	CGGCCG	3 cut(s)	109, 175, 299
Eam1104I	CTCTTC	2 cut(s)	275, 1251
EarI	CTCTTC	2 cut(s)	275, 1251
EciI	GGCGGA	4 cut(s)	35, 41, 223, 254
Ecl136II	GAGCTC	2 cut(s)	215, 1603
EclXI	CGGCCG	3 cut(s)	109, 175, 299
Eco105I	TACGTA	1 cut(s)	1805
Eco130I	CCWWGG	3 cut(s)	2065, 2739, 3305
Eco147I	AGGCCT	1 cut(s)	2452
Eco24I	GRGCYC	2 cut(s)	217, 1605
Eco31I	GGTCTC	2 cut(s)	359, 2560
Eco47I	GGWCC	4 cut(s)	307, 442, 587, 1175
Eco52I	CGGCCG	3 cut(s)	109, 175, 299
Eco53kI	GAGCTC	2 cut(s)	215, 1603
Eco57I	CTGAAG	3 cut(s)	980, 1212, 3084
Eco88I	CYCGRG	2 cut(s)	95, 416
Eco91I	GGTNACC	1 cut(s)	3083
EcoICRI	GAGCTC	2 cut(s)	215, 1603
EcoNI	CCTNNNNNAGG	1 cut(s)	3176
EcoO109I	RGGNCCY	2 cut(s)	587, 1175
EcoO65I	GGTNACC	1 cut(s)	3083
EcoRII	CCWGG	6 cut(s)	1685, 2181, 2356, 2715, 2783, 3276
EcoT14I	CCWWGG	3 cut(s)	2065, 2739, 3305
EcoT38I	GRGCYC	2 cut(s)	217, 1605
ErhI	CCWWGG	3 cut(s)	2065, 2739, 3305
Esp3I	CGTCTC	1 cut(s)	1094
FalI	AAGNNNNNCTT	4 cut(s)	626, 658, 1658, 1690
FaqI	GGGAC	5 cut(s)	238, 1568, 2150, 2409, 3023
FauI	CCCGC	4 cut(s)	173, 420, 441, 736
FauNDI	CATATG	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	1910
FriOI	GRGCYC	2 cut(s)	217, 1605
FspBI	CTAG	5 cut(s)	1539, 1916, 2012, 2399, 2669
GlaI	GCGC	3 cut(s)	7, 2967, 3116
GsaI	CCCAGC	1 cut(s)	718
GsuI	CTGGAG	3 cut(s)	401, 2379, 2738
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	9 cut(s)	34, 111, 177, 301, 561, 696, 2223, 2452, 3236
HapII	CCGG	9 cut(s)	298, 319, 345, 400, 445, 1789, 2472, 2701, 2810
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	3 cut(s)	8, 2968, 3117
Hin1I	GRCGYC	1 cut(s)	396
Hin6I	GCGC	3 cut(s)	6, 2966, 3115
HinP1I	GCGC	3 cut(s)	6, 2966, 3115
HincII	GTYRAC	3 cut(s)	358, 1424, 2749
HindII	GTYRAC	3 cut(s)	358, 1424, 2749
HindIII	AAGCTT	1 cut(s)	1271
HpaII	CCGG	9 cut(s)	298, 319, 345, 400, 445, 1789, 2472, 2701, 2810
Hpy166II	GTNNAC	8 cut(s)	102, 189, 358, 1424, 1911, 2749, 2768, 2830
Hpy8I	GTNNAC	8 cut(s)	102, 189, 358, 1424, 1911, 2749, 2768, 2830
Hpy99I	CGWCG	2 cut(s)	329, 365
HpyAV	CCTTC	6 cut(s)	100, 1734, 1968, 2317, 3136, 3172
HpyCH4IV	ACGT	3 cut(s)	1087, 1122, 1804
HpySE526I	ACGT	3 cut(s)	1087, 1122, 1804
Hsp92I	GRCGYC	1 cut(s)	396
HspAI	GCGC	3 cut(s)	6, 2966, 3115
Kpn2I	TCCGGA	2 cut(s)	1788, 2809
KpnI	GGTACC	1 cut(s)	3250
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	9 cut(s)	616, 787, 943, 1430, 1512, 1963, 2479, 2581, 3145
LmnI	GCTCC	7 cut(s)	1114, 1266, 1600, 1954, 2067, 2474, 2956
LweI	GCATC	4 cut(s)	189, 1968, 2094, 2281
MaeI	CTAG	5 cut(s)	1539, 1916, 2012, 2399, 2669
MaeII	ACGT	3 cut(s)	1087, 1122, 1804
MalI	GATC	9 cut(s)	618, 789, 945, 1432, 1514, 1965, 2481, 2583, 3147
MboI	GATC	9 cut(s)	616, 787, 943, 1430, 1512, 1963, 2479, 2581, 3145
MfeI	CAATTG	1 cut(s)	1958
MflI	RGATCY	3 cut(s)	787, 1512, 1963
MhlI	GDGCHC	4 cut(s)	217, 1605, 2127, 2770
MlsI	TGGCCA	2 cut(s)	696, 2223
MluNI	TGGCCA	2 cut(s)	696, 2223
MlyI	GAGTC	8 cut(s)	54, 107, 110, 392, 506, 1835, 2987, 3010
Mox20I	TGGCCA	2 cut(s)	696, 2223
MroI	TCCGGA	2 cut(s)	1788, 2809
MroXI	GAANNNNTTC	2 cut(s)	1669, 2282
MscI	TGGCCA	2 cut(s)	696, 2223
MseI	TTAA	8 cut(s)	531, 894, 1109, 1845, 2052, 2141, 2213, 2792
MslI	CAYNNNNRTG	3 cut(s)	374, 2460, 3017
Msp20I	TGGCCA	2 cut(s)	696, 2223
MspA1I	CMGCKG	6 cut(s)	168, 304, 935, 1348, 2774, 3207
MspI	CCGG	9 cut(s)	298, 319, 345, 400, 445, 1789, 2472, 2701, 2810
MssI	GTTTAAAC	1 cut(s)	2214
MunI	CAATTG	1 cut(s)	1958
Mva1269I	GAATGC	3 cut(s)	1730, 1845, 2471
MvaI	CCWGG	6 cut(s)	1687, 2183, 2358, 2717, 2785, 3278
MvnI	CGCG	3 cut(s)	114, 168, 3117
NciI	CCSGG	5 cut(s)	298, 346, 401, 2473, 2701
NcoI	CCATGG	2 cut(s)	2739, 3305
NdeI	CATATG	1 cut(s)	1042
NdeII	GATC	9 cut(s)	616, 787, 943, 1430, 1512, 1963, 2479, 2581, 3145
NlaIV	GGNNCC	7 cut(s)	309, 443, 1176, 2088, 2153, 2650, 3248
NmeAIII	GCCGAG	3 cut(s)	87, 1394, 3218
NmuCI	GTSAC	8 cut(s)	46, 455, 1849, 2332, 2590, 3002, 3159, 3253
NspI	RCATGY	1 cut(s)	2310
NspV	TTCGAA	2 cut(s)	2236, 3198
PaeR7I	CTCGAG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	3039
PceI	AGGCCT	1 cut(s)	2452
PciI	ACATGT	1 cut(s)	2306
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 360
PctI	GAATGC	3 cut(s)	1730, 1845, 2471
PdmI	GAANNNNTTC	2 cut(s)	1669, 2282
PfeI	GAWTC	7 cut(s)	721, 880, 1714, 1885, 2033, 2178, 3150
PflFI	GACNNNGTC	2 cut(s)	242, 685
PflMI	CCANNNNNTGG	1 cut(s)	2293
PfoI	TCCNGGA	3 cut(s)	2356, 2783, 3276
PleI	GAGTC	8 cut(s)	53, 106, 110, 391, 505, 1834, 2986, 3009
PmeI	GTTTAAAC	1 cut(s)	2214
PpsI	GAGTC	8 cut(s)	53, 106, 110, 391, 505, 1834, 2986, 3009
Ppu21I	YACGTR	1 cut(s)	1805
PpuMI	RGGWCCY	2 cut(s)	587, 1175
PscI	ACATGT	1 cut(s)	2306
PshBI	ATTAAT	1 cut(s)	1109
PsiI	TTATAA	2 cut(s)	1898, 2504
Psp124BI	GAGCTC	2 cut(s)	217, 1605
Psp1406I	AACGTT	1 cut(s)	1122
Psp5II	RGGWCCY	2 cut(s)	587, 1175
Psp6I	CCWGG	6 cut(s)	1685, 2181, 2356, 2715, 2783, 3276
PspEI	GGTNACC	1 cut(s)	3083
PspFI	CCCAGC	1 cut(s)	714
PspGI	CCWGG	6 cut(s)	1685, 2181, 2356, 2715, 2783, 3276
PspN4I	GGNNCC	7 cut(s)	309, 443, 1176, 2088, 2153, 2650, 3248
PspPI	GGNCC	6 cut(s)	33, 307, 442, 560, 587, 1175
PspPPI	RGGWCCY	2 cut(s)	587, 1175
PspXI	VCTCGAGB	1 cut(s)	95
PstI	CTGCAG	3 cut(s)	934, 1008, 3114
PstNI	CAGNNNCTG	2 cut(s)	1003, 3062
PsuI	RGATCY	3 cut(s)	787, 1512, 1963
PsyI	GACNNNGTC	2 cut(s)	242, 685
PvuII	CAGCTG	2 cut(s)	2774, 3207
RsaI	GTAC	3 cut(s)	2373, 2843, 3248
RsaNI	GTAC	3 cut(s)	2372, 2842, 3247
RseI	CAYNNNNRTG	3 cut(s)	374, 2460, 3017
SacI	GAGCTC	2 cut(s)	217, 1605
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	8 cut(s)	531, 894, 1109, 1845, 2052, 2141, 2213, 2792
Sau3AI	GATC	9 cut(s)	616, 787, 943, 1430, 1512, 1963, 2479, 2581, 3145
Sau96I	GGNCC	6 cut(s)	33, 307, 442, 560, 587, 1175
SchI	GAGTC	8 cut(s)	54, 107, 110, 392, 506, 1835, 2987, 3010
SduI	GDGCHC	4 cut(s)	217, 1605, 2127, 2770
SfaNI	GCATC	4 cut(s)	189, 1968, 2094, 2281
SfcI	CTRYAG	5 cut(s)	666, 930, 1004, 3110, 3173
Sfr274I	CTCGAG	1 cut(s)	95
Sfr303I	CCGCGG	1 cut(s)	169
SfuI	TTCGAA	2 cut(s)	2236, 3198
SgrBI	CCGCGG	1 cut(s)	169
SinI	GGWCC	4 cut(s)	307, 442, 587, 1175
SlaI	CTCGAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	3 cut(s)	374, 2460, 3017
SmlI	CTYRAG	6 cut(s)	95, 551, 1013, 2375, 2937, 3164
SmoI	CTYRAG	6 cut(s)	95, 551, 1013, 2375, 2937, 3164
SnaBI	TACGTA	1 cut(s)	1805
SseBI	AGGCCT	1 cut(s)	2452
SspMI	CTAG	5 cut(s)	1539, 1916, 2012, 2399, 2669
SstI	GAGCTC	2 cut(s)	217, 1605
StuI	AGGCCT	1 cut(s)	2452
StyI	CCWWGG	3 cut(s)	2065, 2739, 3305
TaiI	ACGT	3 cut(s)	1090, 1125, 1807
TatI	WGTACW	1 cut(s)	2841
TauI	GCSGC	9 cut(s)	14, 17, 20, 114, 171, 180, 304, 427, 2157
TfiI	GAWTC	7 cut(s)	721, 880, 1714, 1885, 2033, 2178, 3150
Tru1I	TTAA	8 cut(s)	531, 894, 1109, 1845, 2052, 2141, 2213, 2792
Tru9I	TTAA	8 cut(s)	531, 894, 1109, 1845, 2052, 2141, 2213, 2792
TscAI	CASTG	5 cut(s)	43, 985, 1471, 1525, 2898
TseFI	GTSAC	8 cut(s)	46, 455, 1849, 2332, 2590, 3002, 3159, 3253
Tsp45I	GTSAC	8 cut(s)	46, 455, 1849, 2332, 2590, 3002, 3159, 3253
TspGWI	ACGGA	2 cut(s)	2502, 2578
TspRI	CASTG	5 cut(s)	43, 985, 1471, 1525, 2898
Tth111I	GACNNNGTC	2 cut(s)	242, 685
Van91I	CCANNNNNTGG	1 cut(s)	2293
VneI	GTGCAC	1 cut(s)	2766
VpaK11BI	GGWCC	4 cut(s)	307, 442, 587, 1175
VspI	ATTAAT	1 cut(s)	1109
XagI	CCTNNNNNAGG	1 cut(s)	3176
XapI	RAATTY	6 cut(s)	1435, 1737, 1820, 2278, 2604, 2804
XceI	RCATGY	1 cut(s)	2310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	376, 1742
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	1910
XmnI	GAANNNNTTC	2 cut(s)	1669, 2282
XspI	CTAG	5 cut(s)	1539, 1916, 2012, 2399, 2669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.