AT4G13690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003902
Physical Location & Seq
Reverse (-)
7953296 .. 7955769
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13690.1

Sequence Viewer

Length: 750 bp
ATGAAGAAACCAATTCCTAAAATTAGGGTTTTTGGTCAGCGATCGATTGCTTCTTCCTTCCTGAATCTCAGCTCGATTCCTGTCGATAATACTTCGGAAAATCCGCCGGAGAAAGTGGAGAATCGCAGCAAGCTGAACAAATCAGTGCTGTTTAAGCCAAACAACTTTGAGGAGCGGCTAAGACCATTTACTTCTTTGGTTAGCTCTAAAGATCGACTCATATCTCTCATAGAGAGAAAAGCGAGGGAAGAAAAGAAAAACGGAGATGGTGGTCTAGAAAAGATGATGCTTCAGCAGTTCAAGCCAAGAGAGATTCAGATTAGTGAAGAAGTGAGTAGAGATGTAACAGGTGATGTGAATCTTGAGCCCGTGGATCAAACAGCTGCTGAAGAAACGGATCACATGGCTCCGTACTCCACAGAAATCAATGAAGATATCATTGTGAGGGACGATAAAACATCAAAGAAAAGAAAAGATCCTTTTGAAGGTATGGAGAGCATGAGTAGAACGGGAAAGTCCGTTATGGTCTTTGGAGACAATTCAAAGGTATCAAAGCCAATGCAAAGGGAAAGAGAAAGAAGAAGCAACAACAATAGTAAGAAGCAGAGACCCATATACAACCATTATGCAAATGGTTCAGGATGGTGGGACTGTGATATGGAAGGTGTTGACTCGGAAGAAGTGGGACATAGAGAAGTGTGGGAAGGAGTTGGCTCGACAACATTCGGAGATATAGTTGATTGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.55

Weight (kDa)

6.18

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 175
AciI CCGC 2 cut(s) 104, 175
AclWI GGATC 3 cut(s) 381, 405, 470
AcuI CTGAAG 2 cut(s) 275, 408
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 3 cut(s) 301, 485, 543
AluBI AGCT 4 cut(s) 72, 133, 204, 383
AluI AGCT 4 cut(s) 72, 133, 204, 383
Alw26I GTCTC 2 cut(s) 528, 601
AlwI GGATC 3 cut(s) 381, 405, 470
AlwNI CAGNNNCTG 1 cut(s) 386
ApeKI GCWGC 2 cut(s) 126, 383
AsuHPI GGTGA 1 cut(s) 362
BanII GRGCYC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 138, 370
BccI CCATC 2 cut(s) 260, 636
BcoDI GTCTC 2 cut(s) 528, 601
BfaI CTAG 1 cut(s) 275
BisI GCNGC 3 cut(s) 127, 176, 384
BlsI GCNGC 3 cut(s) 128, 177, 385
BmiI GGNNCC 1 cut(s) 408
BmsI GCATC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 720, 750
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse8I GATNNNNATC 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 647
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 138, 370
Bsh1285I CGRYCG 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 3 cut(s) 461, 662, 699
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 2 cut(s) 528, 601
BsmFI GGGAC 3 cut(s) 461, 662, 699
Bso31I GGTCTC 1 cut(s) 601
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 5 cut(s) 41, 211, 373, 397, 475
BspACI CCGC 2 cut(s) 104, 175
BspCNI CTCAG 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 3 cut(s) 381, 405, 470
BspTNI GGTCTC 1 cut(s) 601
BsrBI CCGCTC 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 5 cut(s) 41, 211, 373, 397, 475
Bst4CI ACNGT 1 cut(s) 653
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 68, 179
BstDSI CCRYGG 1 cut(s) 369
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 647
BstKTI GATC 5 cut(s) 44, 214, 376, 400, 478
BstMAI GTCTC 2 cut(s) 528, 601
BstMBI GATC 5 cut(s) 41, 211, 373, 397, 475
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 154, 301
BstV1I GCAGC 2 cut(s) 138, 370
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 647
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 131
CaiI CAGNNNCTG 1 cut(s) 386
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 1 cut(s) 412
CviAII CATG 2 cut(s) 403, 499
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 68, 179
DpnI GATC 5 cut(s) 43, 213, 375, 399, 477
DpnII GATC 5 cut(s) 41, 211, 373, 397, 475
EciI GGCGGA 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 601
Eco32I GATATC 1 cut(s) 436
Eco57I CTGAAG 2 cut(s) 275, 408
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRV GATATC 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 2 cut(s) 406, 502
FaqI GGGAC 3 cut(s) 461, 662, 699
FatI CATG 2 cut(s) 402, 498
Fnu4HI GCNGC 3 cut(s) 127, 176, 384
FokI GGATG 1 cut(s) 654
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 127, 176, 384
FspBI CTAG 1 cut(s) 275
GluI GCNGC 3 cut(s) 127, 176, 384
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 406, 502
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 7 cut(s) 64, 76, 121, 216, 313, 358, 671
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 4 cut(s) 97, 318, 676, 728
Hpy188III TCNNGA 4 cut(s) 61, 275, 362, 639
Hpy8I GTNNAC 1 cut(s) 670
HpyAV CCTTC 4 cut(s) 67, 479, 656, 698
HpyCH4III ACNGT 1 cut(s) 653
HpyCH4V TGCA 2 cut(s) 562, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 301
HpyF3I CTNAG 2 cut(s) 68, 179
Hsp92II CATG 2 cut(s) 406, 502
Kzo9I GATC 5 cut(s) 41, 211, 373, 397, 475
LmnI GCTCC 2 cut(s) 172, 412
LpnPI CCDG 5 cut(s) 74, 93, 120, 333, 624
Lsp1109I GCAGC 2 cut(s) 138, 370
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 343
MalI GATC 5 cut(s) 43, 213, 375, 399, 477
MbiI CCGCTC 1 cut(s) 175
MboI GATC 5 cut(s) 41, 211, 373, 397, 475
MboII GAAGA 8 cut(s) 16, 45, 260, 338, 401, 443, 591, 689
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 3 cut(s) 12, 21, 538
MlyI GAGTC 2 cut(s) 210, 665
MnlI CCTC 3 cut(s) 163, 237, 438
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 154, 301
NdeII GATC 5 cut(s) 41, 211, 373, 397, 475
NlaIII CATG 2 cut(s) 406, 502
NlaIV GGNNCC 1 cut(s) 408
PfeI GAWTC 5 cut(s) 64, 76, 121, 313, 358
PkrI GCNGC 3 cut(s) 128, 177, 385
Ple19I CGATCG 1 cut(s) 44
PleI GAGTC 2 cut(s) 210, 665
PpsI GAGTC 2 cut(s) 210, 665
PspN4I GGNNCC 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 475
PvuI CGATCG 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 127, 176, 384
Sau3AI GATC 5 cut(s) 41, 211, 373, 397, 475
SchI GAGTC 2 cut(s) 210, 665
SduI GDGCHC 1 cut(s) 369
SetI ASST 8 cut(s) 74, 135, 206, 352, 385, 490, 549, 667
SfaNI GCATC 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 3 cut(s) 12, 21, 538
SsiI CCGC 2 cut(s) 104, 175
SspMI CTAG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 653
TaqI TCGA 5 cut(s) 44, 74, 84, 214, 716
TasI AATT 3 cut(s) 12, 21, 538
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 5 cut(s) 64, 76, 121, 313, 358
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 150
TseI GCWGC 2 cut(s) 126, 383
TspDTI ATGAA 2 cut(s) 17, 444
TspGWI ACGGA 4 cut(s) 276, 399, 410, 508
TspRI CASTG 1 cut(s) 150
XagI CCTNNNNNAGG 1 cut(s) 483
XbaI TCTAGA 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 629
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.