Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003902

Physical Location & Seq

Genomic Coordinates Forward (+)

576867 .. 584872

Gene Structure 8006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1004500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGGTCAAGGAAAGCTCCGGTGGCATTTAGGGCGGCGGGGCAGCGCTCACTGCCTTCATTATTCTCGTCTTGCTCAAAAACGCCGGCCAAGGTTGCAGAAGAAAATCCAGATGAAGGCAACAATGTGCCACTTTCGGACTCTTCAGAGAGGAAGCTGCTCCGGACTTCTGCAAAATCCACAACAGTAAAGGAAAGGTTAAGGCCCTTCTCATCTGTATTTGGGTCAAGAGATTTAAGTGAGTCTATTGATGAGCAAGTTGGGGCAAAGAAAGGAGGGGAAGCAGACAAGAATCATGTTGCTGCTTTAGTGGCTCTCGAACTTTTCAACCATACTGATCTAGGAAAAGGACATTCTGTAGGTCCATCCACTGCTGGTGAAGTTGAAAGTTCTAATGAAGATGTAGTTCAAGAATCGAGAAAAAGGAGGAACCCCTTTGAAGGTGGCGGTTACAAACCCATTGTAAGAAAGAATTTCACAGTGCTAGGAGGTGATCCAACGCCAAAACCGAACCAGAAAAGGAGAAGGGACGAGAGCTTGATCGTAGGCAAGGAGAAACCAGGGCCTGCTTATAATCACTATGCAAGCGGGCGTGGGTGGTGGGACTGCGACCGGGAGGGGATTGACAACGAAGAAGTAGGACTGAATGAGGTGTGGGAAGGAGTCGGATCTACCACATTGGGAGGAATAGAGTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.4

Weight (kDa)

7.78

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13690
fragaria_vesca	FvH4_4g00420
malus_domestica	MD04G1004500.v1.1
prunus_persica	Prupe.1G004200_v2.0.a1 Prupe.1G004200_v2.0.a1
pyrus_communis	pycom04g00460
rosa_chinensis	RchiOBHm_Chr4g0385541 RchiOBHm_Chr6g0244431
rosa_laevigata	RLG00000010211 RLG00000010214 RLG00000010217 RLG00000010226 RLG00000015361
rosa_multiflora	Rmu_co8490289.1_g000001 Rmu_sc0004773.1_g000001 Rmu_sc0004773.1_g000003 Rmu_sc0008728.1_g000011
rosa_roxburghii	Rroxscaffold_5G00333320 Rroxscaffold_5G00333430 Rroxscaffold_5G00333450 Rroxscaffold_7G00215830
rosa_rugosa	Rorug03G0301200 Rorug03G0301300 Rorug05G0508600
rosa_samantha	Rh4AG004600 Rh4AG005000 Rh4AG005800 Rh4AG006700 Rh4BG004200 Rh4CG007200 Rh4DG006100 Rh6AG023700 Rh6BG018900
rosa_wichuraiana	Rw4G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	4 cut(s)	35, 38, 447, 588
AclWI	GGATC	2 cut(s)	488, 676
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	129
AfeI	AGCGCT	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	116, 440
AgsI	TTSAA	4 cut(s)	328, 386, 410, 440
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	3 cut(s)	17, 157, 537
AluI	AGCT	3 cut(s)	17, 157, 537
AlwI	GGATC	2 cut(s)	488, 676
AlwNI	CAGNNNCTG	1 cut(s)	566
Aor13HI	TCCGGA	1 cut(s)	162
Aor51HI	AGCGCT	1 cut(s)	47
AoxI	GGCC	3 cut(s)	87, 203, 563
ApeKI	GCWGC	3 cut(s)	43, 157, 302
ApoI	RAATTY	1 cut(s)	472
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	204, 362, 563
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	389, 503
AvaII	GGWCC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	55, 144, 289
BccI	CCATC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	614
BfaI	CTAG	2 cut(s)	341, 485
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	4 cut(s)	36, 44, 158, 303
BlsI	GCNGC	4 cut(s)	37, 45, 159, 304
Bme1390I	CCNGG	2 cut(s)	561, 614
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	3 cut(s)	204, 362, 563
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	2 cut(s)	561, 614
BpuMI	CCSGG	1 cut(s)	614
BsaJI	CCNNGG	2 cut(s)	90, 560
BsaWI	WCCGGW	2 cut(s)	19, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 440
Bse118I	RCCGGY	1 cut(s)	85
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	90, 560
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	116, 440
BseXI	GCAGC	3 cut(s)	55, 144, 289
Bsh1285I	CGRYCG	1 cut(s)	613
BshFI	GGCC	3 cut(s)	89, 205, 565
BsiEI	CGRYCG	1 cut(s)	613
BsiSI	CCGG	4 cut(s)	20, 86, 163, 613
BslFI	GGGAC	2 cut(s)	542, 617
BslI	CCNNNNNNNGG	2 cut(s)	116, 440
BsmFI	GGGAC	2 cut(s)	542, 617
BsnI	GGCC	3 cut(s)	89, 205, 565
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	337, 493, 540, 668
BspACI	CCGC	4 cut(s)	35, 38, 447, 588
BspANI	GGCC	3 cut(s)	89, 205, 565
BspEI	TCCGGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	2 cut(s)	488, 676
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	90, 560
BssMI	GATC	4 cut(s)	337, 493, 540, 668
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	187, 481
Bst6I	CTCTTC	1 cut(s)	148
BstC8I	GCNNGC	4 cut(s)	87, 567, 586, 590
BstF5I	GGATG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	4 cut(s)	340, 496, 543, 671
BstMBI	GATC	4 cut(s)	337, 493, 540, 668
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 32, 52, 95, 311
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	2 cut(s)	559, 612
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	55, 144, 289
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
BsuRI	GGCC	3 cut(s)	89, 205, 565
BtsCI	GGATG	1 cut(s)	365
BtsI	GCAGTG	2 cut(s)	50, 369
BtsIMutI	CAGTG	3 cut(s)	50, 369, 486
Cac8I	GCNNGC	4 cut(s)	87, 567, 586, 590
CaiI	CAGNNNCTG	1 cut(s)	566
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	204, 362, 563
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	7 cut(s)	17, 89, 157, 205, 314, 537, 565
CviKI_1	RGCY	7 cut(s)	17, 89, 157, 205, 314, 537, 565
DpnI	GATC	4 cut(s)	339, 495, 542, 670
DpnII	GATC	4 cut(s)	337, 493, 540, 668
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	362
Eco47III	AGCGCT	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	129
EcoO109I	RGGNCCY	2 cut(s)	204, 563
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	299
FaiI	YATR	4 cut(s)	297, 333, 573, 582
FaqI	GGGAC	2 cut(s)	542, 617
FatI	CATG	1 cut(s)	295
FauI	CCCGC	2 cut(s)	31, 581
Fnu4HI	GCNGC	4 cut(s)	36, 44, 158, 303
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	4 cut(s)	36, 44, 158, 303
FspBI	CTAG	2 cut(s)	341, 485
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	4 cut(s)	36, 44, 158, 303
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	89, 205, 565
HapII	CCGG	4 cut(s)	20, 86, 163, 613
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	5 cut(s)	140, 242, 292, 413, 663
HpaII	CCGG	4 cut(s)	20, 86, 163, 613
HphI	GGTGA	2 cut(s)	389, 503
Hpy188I	TCNGA	3 cut(s)	139, 148, 668
Hpy188III	TCNNGA	6 cut(s)	110, 163, 228, 317, 410, 417
HpyAV	CCTTC	6 cut(s)	66, 110, 217, 434, 519, 653
HpyCH4III	ACNGT	2 cut(s)	187, 481
HpyCH4V	TGCA	3 cut(s)	98, 173, 584
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 32, 52, 95, 311
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	1 cut(s)	46
Kpn2I	TCCGGA	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	337, 493, 540, 668
LmnI	GCTCC	2 cut(s)	22, 165
Lsp1109I	GCAGC	3 cut(s)	55, 144, 289
MaeI	CTAG	2 cut(s)	341, 485
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	4 cut(s)	339, 495, 542, 670
MboI	GATC	4 cut(s)	337, 493, 540, 668
MboII	GAAGA	4 cut(s)	113, 135, 410, 644
MflI	RGATCY	1 cut(s)	668
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	3 cut(s)	134, 251, 672
MmeI	TCCRAC	2 cut(s)	521, 646
MnlI	CCTC	7 cut(s)	144, 269, 420, 482, 610, 643, 677
MroI	TCCGGA	1 cut(s)	162
MroNI	GCCGGC	1 cut(s)	85
MseI	TTAA	2 cut(s)	200, 236
MspI	CCGG	4 cut(s)	20, 86, 163, 613
MspR9I	CCNGG	2 cut(s)	561, 614
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	5 cut(s)	23, 32, 52, 95, 311
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	4 cut(s)	337, 493, 540, 668
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PdiI	GCCGGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	292, 413
PkrI	GCNGC	4 cut(s)	37, 45, 159, 304
PleI	GAGTC	3 cut(s)	134, 250, 671
PpsI	GAGTC	3 cut(s)	134, 250, 671
PsiI	TTATAA	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	3 cut(s)	204, 362, 563
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	200, 236
SatI	GCNGC	4 cut(s)	36, 44, 158, 303
Sau3AI	GATC	4 cut(s)	337, 493, 540, 668
Sau96I	GGNCC	3 cut(s)	204, 362, 563
SchI	GAGTC	3 cut(s)	134, 251, 672
ScrFI	CCNGG	2 cut(s)	561, 614
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	4 cut(s)	35, 38, 447, 588
SspMI	CTAG	2 cut(s)	341, 485
StyD4I	CCNGG	2 cut(s)	559, 612
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	187, 481
TaqI	TCGA	2 cut(s)	318, 416
TasI	AATT	1 cut(s)	472
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	292, 413
Tru1I	TTAA	2 cut(s)	200, 236
Tru9I	TTAA	2 cut(s)	200, 236
TscAI	CASTG	3 cut(s)	57, 376, 486
TseI	GCWGC	3 cut(s)	43, 157, 302
TspDTI	ATGAA	3 cut(s)	48, 129, 411
TspRI	CASTG	3 cut(s)	57, 376, 486
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	472
XspI	CTAG	2 cut(s)	341, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.