Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003902

Physical Location & Seq

Genomic Coordinates Forward (+)

849013 .. 849945

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGTTCCAAGAAAACTCCGGTTGGGTTTAGGGTTTTGGGGCAGCGTTCACTTCCTTCATCATTTTCTTCTCGCTGTAAAATCCCTGTCAAGGCTGCAGAAGATGATGTGGATAAGGGCTCGCATGGGTCGCTCTCGGACATTCCAGAACAGAGGCTGAAGCACAATTCTGGAACACCCAAGATAGTAAAGGTGAAGTCGCGGCCATTCTCGTCGTTATTGGGTCTGAAAGATCTAAGTGGGTCCACTGATGAGCAAATTGAGGCCAATAAAGGAGGGGAAGCAGAGAAGAGTTCTGTAGCATTGGCATTTGAAAAATTTAAGCATACTGACATAGGAAAAGGGCAATCTATAGTTTCACAGAGTGCTGGTGAAGTAGAATGTCCTGACCAAGATGATCTACCAGAATCAAGAAAAAGGAGACACCCTTGTAAAGGTCTTATGCCTTTGAATGCACTAACTCTCAAGCAAGATAATTTACACTCGTGCTATATGATTGTACGTGCTACTGCTTATCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.98

Weight (kDa)

9.17

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13690
fragaria_vesca	FvH4_4g00420
malus_domestica	MD04G1004500.v1.1
prunus_persica	Prupe.1G004200_v2.0.a1 Prupe.1G004200_v2.0.a1
pyrus_communis	pycom04g00460
rosa_chinensis	RchiOBHm_Chr4g0385541 RchiOBHm_Chr6g0244431
rosa_laevigata	RLG00000010211 RLG00000010214 RLG00000010217 RLG00000010226 RLG00000015361
rosa_multiflora	Rmu_co8490289.1_g000001 Rmu_sc0004773.1_g000001 Rmu_sc0004773.1_g000003 Rmu_sc0008728.1_g000011
rosa_roxburghii	Rroxscaffold_5G00333320 Rroxscaffold_5G00333430 Rroxscaffold_5G00333450 Rroxscaffold_7G00215830
rosa_rugosa	Rorug03G0301200 Rorug03G0301300 Rorug05G0508600
rosa_samantha	Rh4AG004600 Rh4AG005000 Rh4AG005800 Rh4AG006700 Rh4BG004200 Rh4CG007200 Rh4DG006100 Rh6AG023700 Rh6BG018900
rosa_wichuraiana	Rw4G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	202
AciI	CCGC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	179
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	91, 434
AgsI	TTSAA	2 cut(s)	314, 451
Alw26I	GTCTC	1 cut(s)	415
AlwNI	CAGNNNCTG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	203, 264
ApeKI	GCWGC	2 cut(s)	43, 95
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	205, 383
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	484
BbvI	GCAGC	2 cut(s)	55, 82
BcoDI	GTCTC	1 cut(s)	415
BfmI	CTRYAG	3 cut(s)	96, 297, 351
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	3 cut(s)	44, 96, 203
BlsI	GCNGC	3 cut(s)	45, 97, 204
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	503
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 434
BseLI	CCNNNNNNNGG	2 cut(s)	91, 434
BseXI	GCAGC	2 cut(s)	55, 82
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	205, 266
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	91, 434
BsmAI	GTCTC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	205, 266
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	232, 397
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	205, 266
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	100
BssMI	GATC	2 cut(s)	232, 397
BssSI	CACGAG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	236
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	235, 400
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	2 cut(s)	232, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstSFI	CTRYAG	3 cut(s)	96, 297, 351
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	55, 82
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	205, 266
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	95, 120, 157, 205, 266
CviKI_1	RGCY	5 cut(s)	95, 120, 157, 205, 266
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	234, 399
DpnII	GATC	2 cut(s)	232, 397
DraIII	CACNNNGTG	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	1 cut(s)	128
FaiI	YATR	7 cut(s)	126, 327, 335, 353, 443, 492, 494
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	44, 96, 203
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	44, 96, 203
GluI	GCNGC	3 cut(s)	44, 96, 203
HaeIII	GGCC	2 cut(s)	205, 266
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	205, 383
Hpy166II	GTNNAC	2 cut(s)	50, 246
Hpy188I	TCNGA	2 cut(s)	139, 228
Hpy188III	TCNNGA	4 cut(s)	146, 171, 386, 411
Hpy8I	GTNNAC	2 cut(s)	50, 246
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	2 cut(s)	98, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	232, 397
LpnPI	CCDG	7 cut(s)	33, 99, 156, 159, 354, 399, 417
Lsp1109I	GCAGC	2 cut(s)	55, 82
MaeII	ACGT	1 cut(s)	502
MalI	GATC	2 cut(s)	234, 399
MboI	GATC	2 cut(s)	232, 397
MboII	GAAGA	3 cut(s)	60, 113, 301
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	5 cut(s)	166, 258, 317, 475, 518
MnlI	CCTC	3 cut(s)	147, 256, 269
MseI	TTAA	1 cut(s)	321
MspI	CCGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	457
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	2 cut(s)	232, 397
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	244
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	45, 97, 204
Ppu21I	YACGTR	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	44, 96, 203
Sau3AI	GATC	2 cut(s)	232, 397
Sau96I	GGNCC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	3 cut(s)	195, 439, 505
SfcI	CTRYAG	3 cut(s)	96, 297, 351
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	166, 258, 317, 475, 518
SsiI	CCGC	1 cut(s)	202
TaiI	ACGT	1 cut(s)	505
TasI	AATT	5 cut(s)	166, 258, 317, 475, 518
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	43, 95
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	243
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.