Rorug03G0301200
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001371
Physical Location & Seq
Forward (+)
31749993 .. 31755290
5298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0301200.1

Sequence Viewer

Length: 1272 bp
ATGTCTGTAGCATTGGTATGGATGGTTTCCCCCAACACAAAGGTGTTGAATTGCTTTGGGCTGTTGGATTCATCAAGTTTTGTTTTGGGGGATGGAAGAGCAAAGATGGGTAGGAAGCAGAAACGGAATTCATGCTGTCTGAGTAGTAGTTCAGAAGTCAAGTATTTGAGCACTTTTGGCTTACAAAGTGATGAAACCAAATTCCGCATTTTGTCAAGCATGGTAGCCAACCCGGCTGGAGAAATAGTGGTGTCATCGGAACAGAAGGTTTATGATGTGGTGCTGAAGCAGGCAGCCTTAGTGGAGAAGCAGTTGAGGACTAGTGGAGATGATGTTGATGTGAAGCCTGATATTATTCTTCCAGGGAATCTGAGCTTGTTGAGTGAAGCTTATGACAGATGCAGAGAAGTTTGTGCAGAGTATGCCAAGACTTTTTACCTGGGTACTCTGCTTATGACCCCTGAGAGAAGAAGAGCTATCTGGGCAATATATGTGTGGTGTAGAAGAACTGATGAGCTTGTTGATGGGCCTAATGCCTCACACATAACACCACAAGCTTTGGATAGGTGGGAGTCAAGGTTGGAAGATCTTTTCCAAGGTCGTCCATTCGATATGCTTGATGCTGCTTTATCAGATACAGTCACCCAATTTCCTGTTGACATTCAGCCATTCAAGGATATGATAGAGGGGATGAGAATGGACCTTAGGAAATCAATATACAAGAACTTTGATGAACTATACCTCTACTGTTATTATGTTGCCGGGACTGTTGGACTAATGAGTGTTCCAGTCATGGGCATTGCACCTGACTCGCAAGCAACTACAGAATCTGTATATAATGCTGCCTTAGCATTAGGGATTGCAAATCAGCTAACTAACATACTAAGGGATGTTGGAGAAGATGCAAGGAGAGGACGCATTTATTTACCACAGGATGAGCTGGCACAAGCTGGACTTTCTGATGCTGACATATATGCTGGAAAGGTCACAGATAAATGGAGAAGTTTCATGCAGAGTCAGATTAAGAGAGCAAGGATGTTCTTTGATGAGGCAGAGAAAGGAGTCATGGAGCTCAGTGAAGCCAGCAGATGGCCGGTATTGGCGTCCCTACTTTTGTATCGCCAAATATTGGATGAGATAGAAGCTAATGACTACAACAACTTCACAAAAAGGGCTTATGTAAGCAAAGCTAAGAAATTACTTGCTTTGCCTATGGCATATACTAAATCCCTGATTCTGCCATCGAGAACACTCGAAATAAATCGAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

423

Amino Acids

47.66

Weight (kDa)

5.82

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQS_PSY PF00494 140 - 397 4.2e-79 Squalene/phytoene synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1089, 1129
AciI CCGC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 1091
AcsI RAATTY 2 cut(s) 127, 200
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 1103
AfaI GTAC 1 cut(s) 445
AfiI CCNNNNNNNGG 3 cut(s) 794, 1089, 1129
AgsI TTSAA 2 cut(s) 49, 673
AhlI ACTAGT 1 cut(s) 320
AjnI CCWGG 2 cut(s) 361, 438
AleI CACNNNNGTG 1 cut(s) 41
Alw21I GWGCWC 2 cut(s) 173, 1074
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 2 cut(s) 527, 1091
ApeKI GCWGC 3 cut(s) 293, 623, 842
ApoI RAATTY 2 cut(s) 127, 200
AspS9I GGNCC 2 cut(s) 527, 700
AsuC2I CCSGG 2 cut(s) 233, 763
AsuHPI GGTGA 1 cut(s) 634
AvaII GGWCC 1 cut(s) 700
AxyI CCTNAGG 1 cut(s) 704
BaeI ACNNNNGTAYC 2 cut(s) 1100, 1133
BanII GRGCYC 1 cut(s) 1074
Bbv12I GWGCWC 2 cut(s) 173, 1074
BbvI GCAGC 3 cut(s) 305, 610, 829
BccI CCATC 6 cut(s) 16, 86, 100, 518, 1083, 1249
BcgI CGANNNNNNTGC 2 cut(s) 792, 826
BciT130I CCWGG 2 cut(s) 363, 440
BcnI CCSGG 2 cut(s) 233, 763
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 2 cut(s) 321, 1270
BfmI CTRYAG 2 cut(s) 6, 822
BglI GCCNNNNNGGC 1 cut(s) 233
BglII AGATCT 1 cut(s) 586
BisI GCNGC 3 cut(s) 294, 624, 843
BlsI GCNGC 3 cut(s) 295, 625, 844
Bme1390I CCNGG 4 cut(s) 233, 363, 440, 763
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 2 cut(s) 527, 700
BmrFI CCNGG 4 cut(s) 233, 363, 440, 763
BmsI GCATC 4 cut(s) 389, 610, 892, 952
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 847
BpuMI CCSGG 2 cut(s) 233, 763
BsaHI GRCGYC 1 cut(s) 1103
BsaJI CCNNGG 3 cut(s) 362, 439, 595
BsaXI ACNNNNNCTCC 8 cut(s) 231, 261, 296, 318, 326, 348, 563, 593
Bsc4I CCNNNNNNNGG 3 cut(s) 794, 1089, 1129
Bse118I RCCGGY 1 cut(s) 1093
Bse1I ACTGG 1 cut(s) 788
Bse21I CCTNAGG 1 cut(s) 704
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 2 cut(s) 363, 440
BseDI CCNNGG 3 cut(s) 362, 439, 595
BseGI GGATG 7 cut(s) 27, 97, 696, 895, 940, 1041, 1138
BseLI CCNNNNNNNGG 3 cut(s) 794, 1089, 1129
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 4 cut(s) 131, 362, 453, 1087
BseNI ACTGG 1 cut(s) 788
BseXI GCAGC 3 cut(s) 305, 610, 829
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 2 cut(s) 529, 1093
BsiHKAI GWGCWC 2 cut(s) 173, 1074
BsiSI CCGG 3 cut(s) 233, 762, 1094
BslFI GGGAC 2 cut(s) 778, 1090
BslI CCNNNNNNNGG 3 cut(s) 794, 1089, 1129
BsmFI GGGAC 2 cut(s) 778, 1090
BsnI GGCC 2 cut(s) 529, 1093
Bsp1286I GDGCHC 2 cut(s) 173, 1074
Bsp143I GATC 1 cut(s) 586
BspACI CCGC 1 cut(s) 205
BspANI GGCC 2 cut(s) 529, 1093
BspCNI CTCAG 4 cut(s) 132, 363, 454, 1086
BspQI GCTCTTC 2 cut(s) 91, 466
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 1 cut(s) 1093
BsrI ACTGG 1 cut(s) 788
BssAI RCCGGY 1 cut(s) 1093
BssECI CCNNGG 3 cut(s) 362, 439, 595
BssMI GATC 1 cut(s) 586
BssNI GRCGYC 1 cut(s) 1103
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 2 cut(s) 363, 440
Bst4CI ACNGT 3 cut(s) 640, 749, 769
Bst6I CTCTTC 2 cut(s) 91, 466
BstACI GRCGYC 1 cut(s) 1103
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 4 cut(s) 291, 816, 942, 1084
BstDEI CTNAG 9 cut(s) 140, 298, 371, 462, 704, 847, 884, 1073, 1191
BstF5I GGATG 7 cut(s) 27, 97, 696, 895, 940, 1041, 1138
BstKTI GATC 1 cut(s) 589
BstMBI GATC 1 cut(s) 586
BstMWI GCNNNNNNNGC 5 cut(s) 177, 233, 422, 482, 848
BstNI CCWGG 2 cut(s) 363, 440
BstSCI CCNGG 4 cut(s) 231, 361, 438, 761
BstSFI CTRYAG 2 cut(s) 6, 822
BstV1I GCAGC 3 cut(s) 305, 610, 829
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
Bsu36I CCTNAGG 1 cut(s) 704
BsuRI GGCC 2 cut(s) 529, 1093
BtsCI GGATG 7 cut(s) 27, 97, 696, 895, 940, 1041, 1138
BtsIMutI CAGTG 1 cut(s) 1081
Cac8I GCNNGC 4 cut(s) 291, 816, 942, 1084
CaiI CAGNNNCTG 1 cut(s) 830
Cfr10I RCCGGY 1 cut(s) 1093
Cfr13I GGNCC 2 cut(s) 527, 700
CseI GACGC 2 cut(s) 924, 1092
Csp6I GTAC 1 cut(s) 444
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 5 cut(s) 132, 220, 793, 1009, 1066
CviQI GTAC 1 cut(s) 444
DdeI CTNAG 9 cut(s) 140, 298, 371, 462, 704, 847, 884, 1073, 1191
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 1091
Eam1104I CTCTTC 2 cut(s) 91, 466
EarI CTCTTC 2 cut(s) 91, 466
Ecl136II GAGCTC 1 cut(s) 1072
Eco130I CCWWGG 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 1074
Eco47I GGWCC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 1072
Eco57I CTGAAG 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 704
EcoICRI GAGCTC 1 cut(s) 1072
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 361, 438
EcoT14I CCWWGG 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 1074
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 5 cut(s) 135, 223, 796, 1012, 1069
FalI AAGNNNNNCTT 2 cut(s) 939, 971
FaqI GGGAC 2 cut(s) 778, 1090
FatI CATG 5 cut(s) 131, 219, 792, 1008, 1065
Fnu4HI GCNGC 3 cut(s) 294, 624, 843
FokI GGATG 7 cut(s) 34, 104, 703, 902, 947, 1048, 1145
FriOI GRGCYC 1 cut(s) 1074
Fsp4HI GCNGC 3 cut(s) 294, 624, 843
FspBI CTAG 2 cut(s) 321, 1270
GluI GCNGC 3 cut(s) 294, 624, 843
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 529, 1093
HapII CCGG 3 cut(s) 233, 762, 1094
HgaI GACGC 2 cut(s) 924, 1092
Hin1I GRCGYC 1 cut(s) 1103
Hin1II CATG 5 cut(s) 135, 223, 796, 1012, 1069
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HindIII AAGCTT 2 cut(s) 387, 555
HinfI GANTC 8 cut(s) 68, 367, 572, 809, 827, 1015, 1062, 1234
HpaII CCGG 3 cut(s) 233, 762, 1094
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 7 cut(s) 141, 154, 259, 372, 634, 961, 1020
Hpy188III TCNNGA 1 cut(s) 1245
Hpy8I GTNNAC 1 cut(s) 658
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 3 cut(s) 640, 749, 769
HpyCH4V TGCA 6 cut(s) 402, 416, 803, 863, 905, 1012
HpyF10VI GCNNNNNNNGC 5 cut(s) 177, 233, 422, 482, 848
HpyF3I CTNAG 9 cut(s) 140, 298, 371, 462, 704, 847, 884, 1073, 1191
Hsp92I GRCGYC 1 cut(s) 1103
Hsp92II CATG 5 cut(s) 135, 223, 796, 1012, 1069
Kzo9I GATC 1 cut(s) 586
LguI GCTCTTC 2 cut(s) 91, 466
LmnI GCTCC 1 cut(s) 1069
Lsp1109I GCAGC 3 cut(s) 305, 610, 829
LweI GCATC 4 cut(s) 389, 610, 892, 952
MaeI CTAG 2 cut(s) 321, 1270
MaeIII GTNAC 2 cut(s) 640, 985
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MboII GAAGA 7 cut(s) 108, 350, 480, 483, 516, 596, 911
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 173, 1074
MluCI AATT 5 cut(s) 49, 127, 200, 647, 1196
MlyI GAGTC 4 cut(s) 581, 803, 1024, 1071
MmeI TCCRAC 4 cut(s) 45, 561, 751, 874
MnlI CCTC 6 cut(s) 309, 547, 679, 752, 905, 1042
MseI TTAA 1 cut(s) 1023
MslI CAYNNNNRTG 2 cut(s) 16, 41
MspI CCGG 3 cut(s) 233, 762, 1094
MspR9I CCNGG 4 cut(s) 233, 363, 440, 763
MvaI CCWGG 2 cut(s) 363, 440
MwoI GCNNNNNNNGC 5 cut(s) 177, 233, 422, 482, 848
NciI CCSGG 2 cut(s) 233, 763
NdeII GATC 1 cut(s) 586
NlaIII CATG 5 cut(s) 135, 223, 796, 1012, 1069
NmuCI GTSAC 2 cut(s) 640, 985
OliI CACNNNNGTG 1 cut(s) 41
PciSI GCTCTTC 2 cut(s) 91, 466
PfeI GAWTC 4 cut(s) 68, 367, 827, 1234
PflMI CCANNNNNTGG 2 cut(s) 1089, 1129
PkrI GCNGC 3 cut(s) 295, 625, 844
PleI GAGTC 4 cut(s) 580, 803, 1023, 1070
PpsI GAGTC 4 cut(s) 580, 803, 1023, 1070
Psp124BI GAGCTC 1 cut(s) 1074
Psp6I CCWGG 2 cut(s) 361, 438
PspGI CCWGG 2 cut(s) 361, 438
PspPI GGNCC 2 cut(s) 527, 700
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
RseI CAYNNNNRTG 2 cut(s) 16, 41
SacI GAGCTC 1 cut(s) 1074
SapI GCTCTTC 2 cut(s) 91, 466
SaqAI TTAA 1 cut(s) 1023
SatI GCNGC 3 cut(s) 294, 624, 843
Sau3AI GATC 1 cut(s) 586
Sau96I GGNCC 2 cut(s) 527, 700
SchI GAGTC 4 cut(s) 581, 803, 1024, 1071
ScrFI CCNGG 4 cut(s) 233, 363, 440, 763
SduI GDGCHC 2 cut(s) 173, 1074
SfaNI GCATC 4 cut(s) 389, 610, 892, 952
SfcI CTRYAG 2 cut(s) 6, 822
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 2 cut(s) 16, 41
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 5 cut(s) 49, 127, 200, 647, 1196
SsiI CCGC 1 cut(s) 205
SspI AATATT 1 cut(s) 1128
SspMI CTAG 2 cut(s) 321, 1270
SstI GAGCTC 1 cut(s) 1074
StyD4I CCNGG 4 cut(s) 231, 361, 438, 761
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 640, 749, 769
TaqI TCGA 4 cut(s) 609, 1244, 1254, 1264
TasI AATT 5 cut(s) 49, 127, 200, 647, 1196
TfiI GAWTC 4 cut(s) 68, 367, 827, 1234
Tru1I TTAA 1 cut(s) 1023
Tru9I TTAA 1 cut(s) 1023
TscAI CASTG 1 cut(s) 1081
TseFI GTSAC 2 cut(s) 640, 985
TseI GCWGC 3 cut(s) 293, 623, 842
Tsp45I GTSAC 2 cut(s) 640, 985
TspDTI ATGAA 5 cut(s) 60, 120, 207, 747, 997
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 1081
Van91I CCANNNNNTGG 2 cut(s) 1089, 1129
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 2 cut(s) 127, 200
XspI CTAG 2 cut(s) 321, 1270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.