Rroxscaffold_7G00202120
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001371
Physical Location & Seq
Reverse (-)
50007713 .. 50022716
15004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202120.1

Sequence Viewer

Length: 393 bp
ATGGTACTGTTAATCTCAGTACTTTCCAAAGAGGCCTTGGCAAAGAAACAATCCACCAAAACTGGAGAGGCTGTTGAATTATTGTCAACAGGAAAGAACTATATTGGTGCAGCTAATGAAAGACTAGACAATGTGTTCGGCAATCTCACCAATCAGCAAGGAATGGTTCTTCCTTTTGAATCGCTCTCAGCTACATCTGATAAAATCAGATATGCTGTTGACATGCCACAGTTCAGACCATACGATAGAAGTTCCAGGGACCATAGTCCAGATGAAGCAAAGGGAAAGATTCAGGAGACATCTATTCATTTGAGGATTGAAAATCAGGGAGATAAAATGAACTGTGAAAATGGCGCAACTGAAGGCACATATCTAGCAGAAAAGGTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

130

Amino Acids

14.35

Weight (kDa)

5.7

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 2 cut(s) 6, 21
AgsI TTSAA 3 cut(s) 77, 179, 320
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 113, 191
AluI AGCT 2 cut(s) 113, 191
Alw26I GTCTC 1 cut(s) 290
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 125, 374
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 256
BoxI GACNNNNGTC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 36, 255
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 36, 255
BseMII CTCAG 2 cut(s) 30, 201
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 1 cut(s) 35
BslFI GGGAC 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 35
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 29, 200
BspLI GGNNCC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 36, 255
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 9, 231, 344
BstDEI CTNAG 2 cut(s) 16, 187
BstHHI GCGC 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 226
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 35
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 5, 20
CviAII CATG 1 cut(s) 223
CviJI RGCY 4 cut(s) 35, 71, 113, 191
CviKI_1 RGCY 4 cut(s) 35, 71, 113, 191
CviQI GTAC 2 cut(s) 5, 20
DdeI CTNAG 2 cut(s) 16, 187
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 226
FaiI YATR 6 cut(s) 102, 213, 224, 241, 264, 370
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 125, 374
GlaI GCGC 1 cut(s) 355
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 1 cut(s) 35
HhaI GCGC 1 cut(s) 356
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HincII GTYRAC 2 cut(s) 87, 220
HindII GTYRAC 2 cut(s) 87, 220
HinfI GANTC 2 cut(s) 179, 289
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 87, 220
Hpy188I TCNGA 3 cut(s) 199, 209, 236
Hpy188III TCNNGA 2 cut(s) 269, 293
Hpy8I GTNNAC 2 cut(s) 87, 220
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 3 cut(s) 9, 231, 344
HpyCH4V TGCA 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 16, 187
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 1 cut(s) 354
LpnPI CCDG 7 cut(s) 48, 75, 241, 268, 278, 282, 311
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 2 cut(s) 125, 374
MboII GAAGA 1 cut(s) 161
MluCI AATT 1 cut(s) 77
MnlI CCTC 3 cut(s) 25, 61, 306
MseI TTAA 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 260
NspI RCATGY 1 cut(s) 226
PceI AGGCCT 1 cut(s) 35
PfeI GAWTC 2 cut(s) 179, 289
PkrI GCNGC 1 cut(s) 112
PshAI GACNNNNGTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 259
RsaI GTAC 2 cut(s) 6, 21
RsaNI GTAC 2 cut(s) 5, 20
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 256
SetI ASST 3 cut(s) 115, 193, 387
SinI GGWCC 1 cut(s) 259
Sse9I AATT 1 cut(s) 77
SseBI AGGCCT 1 cut(s) 35
SspMI CTAG 2 cut(s) 125, 374
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 3 cut(s) 9, 231, 344
TasI AATT 1 cut(s) 77
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 2 cut(s) 179, 289
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 132, 288, 296, 353
VpaK11BI GGWCC 1 cut(s) 259
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XspI CTAG 2 cut(s) 125, 374
ZrmI AGTACT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.