Rh4DG005300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001371
Physical Location & Seq
Forward (+)
939352 .. 942088
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG005300.1

Sequence Viewer

Length: 339 bp
ATGTCTATAAATGCTGTCAGCTTACTTCTGGAAGCATATGTCTTCAAACAAAATCATTGCAAAGTCTTAGGAGGCTTAAAGTTCAGACCATACGATAGAAGTTCCAGGGACCATAGTCCAAATGAAGCAAAGGGAAAGATTCAGGAGACAACTATTCATTTGCGGATTGAAAATCAGGGAGATAAAATGAACTGTGAAAATGGCGCAACTGAAGGCACATATCTAGCAGAAAAGTTCCACAAATTGAGGAATCTTGATTTTAATCACGCCACGAGTGCAAACCAGAGTCACAAAAACATGCATGTGAAAGAAGTGTCGAAACAAAGTATCTCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.73

Weight (kDa)

9.17

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 231
AgsI TTSAA 2 cut(s) 46, 170
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 109
BauI CACGAG 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 106
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 261
BseMI GCAATG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 122
BspACI CCGC 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 105
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 206
BstMAI GTCTC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 2 cut(s) 301, 305
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 34
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 109
CviAII CATG 2 cut(s) 298, 302
CviJI RGCY 2 cut(s) 21, 75
CviKI_1 RGCY 2 cut(s) 21, 75
DdeI CTNAG 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 303
FaeI CATG 2 cut(s) 301, 305
FaiI YATR 8 cut(s) 8, 37, 39, 91, 114, 220, 299, 303
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 297, 301
FauNDI CATATG 1 cut(s) 37
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 205
HhaI GCGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 301, 305
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HinfI GANTC 3 cut(s) 139, 250, 286
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 3 cut(s) 29, 143, 254
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 60, 278, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 2 cut(s) 301, 305
HspAI GCGC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 14, 91, 118, 128, 161, 296
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 287
MboII GAAGA 1 cut(s) 34
MluCI AATT 2 cut(s) 242, 334
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 2 cut(s) 65, 240
Mph1103I ATGCAT 1 cut(s) 303
MseI TTAA 2 cut(s) 77, 261
MslI CAYNNNNRTG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeI CATATG 1 cut(s) 37
NlaIII CATG 2 cut(s) 301, 305
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 2 cut(s) 301, 305
PfeI GAWTC 2 cut(s) 139, 250
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 77, 261
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 106
SetI ASST 1 cut(s) 23
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 2 cut(s) 242, 334
SsiI CCGC 1 cut(s) 163
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 317
TasI AATT 2 cut(s) 242, 334
TfiI GAWTC 2 cut(s) 139, 250
Tru1I TTAA 2 cut(s) 77, 261
Tru9I TTAA 2 cut(s) 77, 261
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 138, 146, 203
VpaK11BI GGWCC 1 cut(s) 109
XceI RCATGY 2 cut(s) 301, 305
XspI CTAG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.