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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 113, 992 |
| Acc36I | ACCTGC | 2 cut(s) | 113, 992 |
| AccB1I | GGYRCC | 1 cut(s) | 628 |
| AccIII | TCCGGA | 2 cut(s) | 832, 1120 |
| AclI | AACGTT | 1 cut(s) | 389 |
| AcsI | RAATTY | 2 cut(s) | 651, 873 |
| AcuI | CTGAAG | 3 cut(s) | 792, 879, 1167 |
| AfaI | GTAC | 1 cut(s) | 1500 |
| AgsI | TTSAA | 4 cut(s) | 506, 608, 1274, 1515 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1495, 1527 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1227, 1259 |
| Alw21I | GWGCWC | 5 cut(s) | 87, 273, 435, 710, 1101 |
| Alw26I | GTCTC | 5 cut(s) | 47, 395, 773, 1061, 1421 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1568 |
| Ama87I | CYCGRG | 3 cut(s) | 425, 1091, 1369 |
| Aor13HI | TCCGGA | 2 cut(s) | 832, 1120 |
| AoxI | GGCC | 1 cut(s) | 1224 |
| ApeKI | GCWGC | 1 cut(s) | 409 |
| ApoI | RAATTY | 2 cut(s) | 651, 873 |
| AsuC2I | CCSGG | 2 cut(s) | 1092, 1093 |
| AsuHPI | GGTGA | 6 cut(s) | 137, 485, 863, 1016, 1151, 1475 |
| AsuII | TTCGAA | 2 cut(s) | 78, 1322 |
| AvaI | CYCGRG | 3 cut(s) | 425, 1091, 1369 |
| AxyI | CCTNAGG | 2 cut(s) | 633, 1299 |
| BanI | GGYRCC | 1 cut(s) | 628 |
| BanII | GRGCYC | 6 cut(s) | 87, 273, 426, 435, 1092, 1101 |
| BbsI | GAAGAC | 2 cut(s) | 54, 1368 |
| Bbv12I | GWGCWC | 5 cut(s) | 87, 273, 435, 710, 1101 |
| BbvI | GCAGC | 1 cut(s) | 396 |
| BccI | CCATC | 3 cut(s) | 622, 695, 1593 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1360, 1394 |
| BclI | TGATCA | 2 cut(s) | 220, 943 |
| BcnI | CCSGG | 2 cut(s) | 1092, 1093 |
| BcoDI | GTCTC | 5 cut(s) | 47, 395, 773, 1061, 1421 |
| BfaI | CTAG | 2 cut(s) | 744, 804 |
| BfuAI | ACCTGC | 2 cut(s) | 113, 992 |
| BisI | GCNGC | 1 cut(s) | 410 |
| BlsI | GCNGC | 1 cut(s) | 411 |
| Bme1390I | CCNGG | 2 cut(s) | 1092, 1093 |
| BmeT110I | CYCGRG | 3 cut(s) | 425, 1091, 1369 |
| BmiI | GGNNCC | 5 cut(s) | 453, 630, 831, 1119, 1560 |
| BmrFI | CCNGG | 2 cut(s) | 1092, 1093 |
| BmsI | GCATC | 4 cut(s) | 181, 248, 457, 971 |
| BpiI | GAAGAC | 2 cut(s) | 54, 1368 |
| BpmI | CTGGAG | 1 cut(s) | 438 |
| Bpu14I | TTCGAA | 2 cut(s) | 78, 1322 |
| BpuEI | CTTGAG | 2 cut(s) | 254, 1476 |
| BpuMI | CCSGG | 2 cut(s) | 1092, 1093 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1635 |
| BsaJI | CCNNGG | 8 cut(s) | 258, 336, 426, 981, 1091, 1092, 1451, 1502 |
| BsaWI | WCCGGW | 2 cut(s) | 832, 1120 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1227, 1257 |
| Bse21I | CCTNAGG | 2 cut(s) | 633, 1299 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1635 |
| BseAI | TCCGGA | 2 cut(s) | 832, 1120 |
| BseDI | CCNNGG | 8 cut(s) | 258, 336, 426, 981, 1091, 1092, 1451, 1502 |
| BseGI | GGATG | 2 cut(s) | 472, 1540 |
| BseJI | GATNNNNATC | 1 cut(s) | 1635 |
| BseMII | CTCAG | 5 cut(s) | 87, 286, 549, 624, 1290 |
| BseRI | GAGGAG | 3 cut(s) | 281, 443, 1535 |
| BseXI | GCAGC | 1 cut(s) | 396 |
| BshFI | GGCC | 1 cut(s) | 1226 |
| BshNI | GGYRCC | 1 cut(s) | 628 |
| BsiHKAI | GWGCWC | 5 cut(s) | 87, 273, 435, 710, 1101 |
| BsiHKCI | CYCGRG | 3 cut(s) | 425, 1091, 1369 |
| BsiSI | CCGG | 3 cut(s) | 833, 1092, 1121 |
| BsmAI | GTCTC | 5 cut(s) | 47, 395, 773, 1061, 1421 |
| BsmI | GAATGC | 2 cut(s) | 124, 1138 |
| BsnI | GGCC | 1 cut(s) | 1226 |
| BsoBI | CYCGRG | 3 cut(s) | 425, 1091, 1369 |
| Bsp119I | TTCGAA | 2 cut(s) | 78, 1322 |
| Bsp1286I | GDGCHC | 7 cut(s) | 87, 273, 426, 435, 710, 1092, 1101 |
| Bsp13I | TCCGGA | 2 cut(s) | 832, 1120 |
| Bsp143I | GATC | 5 cut(s) | 220, 289, 943, 1311, 1524 |
| BspANI | GGCC | 1 cut(s) | 1226 |
| BspCNI | CTCAG | 5 cut(s) | 88, 285, 548, 625, 1291 |
| BspEI | TCCGGA | 2 cut(s) | 832, 1120 |
| BspHI | TCATGA | 1 cut(s) | 1588 |
| BspLI | GGNNCC | 5 cut(s) | 453, 630, 831, 1119, 1560 |
| BspMI | ACCTGC | 2 cut(s) | 113, 992 |
| BspQI | GCTCTTC | 5 cut(s) | 75, 414, 1080, 1119, 1440 |
| BspT104I | TTCGAA | 2 cut(s) | 78, 1322 |
| BspT107I | GGYRCC | 1 cut(s) | 628 |
| BssECI | CCNNGG | 8 cut(s) | 258, 336, 426, 981, 1091, 1092, 1451, 1502 |
| BssMI | GATC | 5 cut(s) | 220, 289, 943, 1311, 1524 |
| BssT1I | CCWWGG | 4 cut(s) | 258, 336, 981, 1502 |
| Bst4CI | ACNGT | 1 cut(s) | 919 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 245 |
| BstBI | TTCGAA | 2 cut(s) | 78, 1322 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 354, 1020 |
| BstDEI | CTNAG | 5 cut(s) | 96, 272, 535, 633, 1299 |
| BstF5I | GGATG | 2 cut(s) | 472, 1540 |
| BstKTI | GATC | 5 cut(s) | 223, 292, 946, 1314, 1527 |
| BstMAI | GTCTC | 5 cut(s) | 47, 395, 773, 1061, 1421 |
| BstMBI | GATC | 5 cut(s) | 220, 289, 943, 1311, 1524 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 245, 430, 1096 |
| BstNSI | RCATGY | 1 cut(s) | 848 |
| BstSCI | CCNGG | 2 cut(s) | 1090, 1091 |
| BstV1I | GCAGC | 1 cut(s) | 396 |
| BstV2I | GAAGAC | 2 cut(s) | 54, 1368 |
| Bsu36I | CCTNAGG | 2 cut(s) | 633, 1299 |
| BsuRI | GGCC | 1 cut(s) | 1226 |
| BtsCI | GGATG | 2 cut(s) | 472, 1540 |
| BtsIMutI | CAGTG | 3 cut(s) | 186, 1200, 1657 |
| BveI | ACCTGC | 2 cut(s) | 113, 992 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 354, 1020 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1568 |
| CciI | TCATGA | 1 cut(s) | 1588 |
| Cfr9I | CCCGGG | 1 cut(s) | 1091 |
| CseI | GACGC | 1 cut(s) | 1249 |
| Csp6I | GTAC | 1 cut(s) | 1499 |
| CviAII | CATG | 5 cut(s) | 581, 668, 845, 995, 1589 |
| CviQI | GTAC | 1 cut(s) | 1499 |
| DdeI | CTNAG | 5 cut(s) | 96, 272, 535, 633, 1299 |
| DpnI | GATC | 5 cut(s) | 222, 291, 945, 1313, 1526 |
| DpnII | GATC | 5 cut(s) | 220, 289, 943, 1311, 1524 |
| DraI | TTTAAA | 1 cut(s) | 814 |
| Ecl136II | GAGCTC | 4 cut(s) | 85, 271, 433, 1099 |
| Eco130I | CCWWGG | 4 cut(s) | 258, 336, 981, 1502 |
| Eco24I | GRGCYC | 6 cut(s) | 87, 273, 426, 435, 1092, 1101 |
| Eco53kI | GAGCTC | 4 cut(s) | 85, 271, 433, 1099 |
| Eco57I | CTGAAG | 3 cut(s) | 792, 879, 1167 |
| Eco81I | CCTNAGG | 2 cut(s) | 633, 1299 |
| Eco88I | CYCGRG | 3 cut(s) | 425, 1091, 1369 |
| EcoICRI | GAGCTC | 4 cut(s) | 85, 271, 433, 1099 |
| EcoT14I | CCWWGG | 4 cut(s) | 258, 336, 981, 1502 |
| EcoT22I | ATGCAT | 1 cut(s) | 911 |
| EcoT38I | GRGCYC | 6 cut(s) | 87, 273, 426, 435, 1092, 1101 |
| ErhI | CCWWGG | 4 cut(s) | 258, 336, 981, 1502 |
| FaeI | CATG | 5 cut(s) | 584, 671, 848, 998, 1592 |
| FatI | CATG | 5 cut(s) | 580, 667, 844, 994, 1588 |
| FbaI | TGATCA | 2 cut(s) | 220, 943 |
| Fnu4HI | GCNGC | 1 cut(s) | 410 |
| FokI | GGATG | 2 cut(s) | 479, 1547 |
| FriOI | GRGCYC | 6 cut(s) | 87, 273, 426, 435, 1092, 1101 |
| Fsp4HI | GCNGC | 1 cut(s) | 410 |
| FspBI | CTAG | 2 cut(s) | 744, 804 |
| GluI | GCNGC | 1 cut(s) | 410 |
| GsuI | CTGGAG | 1 cut(s) | 438 |
| HaeIII | GGCC | 1 cut(s) | 1226 |
| HapII | CCGG | 3 cut(s) | 833, 1092, 1121 |
| HgaI | GACGC | 1 cut(s) | 1249 |
| Hin1II | CATG | 5 cut(s) | 584, 671, 848, 998, 1592 |
| HindIII | AAGCTT | 4 cut(s) | 816, 1317, 1432, 1464 |
| HinfI | GANTC | 7 cut(s) | 176, 497, 524, 899, 1190, 1553, 1565 |
| HpaII | CCGG | 3 cut(s) | 833, 1092, 1121 |
| HphI | GGTGA | 6 cut(s) | 137, 485, 863, 1016, 1151, 1475 |
| HpyAV | CCTTC | 3 cut(s) | 102, 578, 1244 |
| HpyCH4III | ACNGT | 1 cut(s) | 919 |
| HpyCH4IV | ACGT | 3 cut(s) | 389, 623, 661 |
| HpyCH4V | TGCA | 9 cut(s) | 122, 194, 383, 412, 790, 909, 1052, 1078, 1381 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 245, 430, 1096 |
| HpyF3I | CTNAG | 5 cut(s) | 96, 272, 535, 633, 1299 |
| HpySE526I | ACGT | 3 cut(s) | 389, 623, 661 |
| Hsp92II | CATG | 5 cut(s) | 584, 671, 848, 998, 1592 |
| Kpn2I | TCCGGA | 2 cut(s) | 832, 1120 |
| Ksp22I | TGATCA | 2 cut(s) | 220, 943 |
| Kzo9I | GATC | 5 cut(s) | 220, 289, 943, 1311, 1524 |
| LguI | GCTCTTC | 5 cut(s) | 75, 414, 1080, 1119, 1440 |
| Lsp1109I | GCAGC | 1 cut(s) | 396 |
| LweI | GCATC | 4 cut(s) | 181, 248, 457, 971 |
| MaeI | CTAG | 2 cut(s) | 744, 804 |
| MaeII | ACGT | 3 cut(s) | 389, 623, 661 |
| MaeIII | GTNAC | 1 cut(s) | 763 |
| MalI | GATC | 5 cut(s) | 222, 291, 945, 1313, 1526 |
| MboI | GATC | 5 cut(s) | 220, 289, 943, 1311, 1524 |
| MhlI | GDGCHC | 7 cut(s) | 87, 273, 426, 435, 710, 1092, 1101 |
| MluCI | AATT | 8 cut(s) | 210, 446, 608, 651, 873, 1044, 1112, 1375 |
| MlyI | GAGTC | 1 cut(s) | 1562 |
| MmeI | TCCRAC | 1 cut(s) | 1536 |
| Mph1103I | ATGCAT | 1 cut(s) | 911 |
| MroI | TCCGGA | 2 cut(s) | 832, 1120 |
| MseI | TTAA | 3 cut(s) | 156, 813, 1043 |
| MslI | CAYNNNNRTG | 1 cut(s) | 849 |
| MspA1I | CMGCKG | 5 cut(s) | 8, 356, 409, 731, 1022 |
| MspI | CCGG | 3 cut(s) | 833, 1092, 1121 |
| MspR9I | CCNGG | 2 cut(s) | 1092, 1093 |
| Mva1269I | GAATGC | 2 cut(s) | 124, 1138 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 245, 430, 1096 |
| NciI | CCSGG | 2 cut(s) | 1092, 1093 |
| NdeII | GATC | 5 cut(s) | 220, 289, 943, 1311, 1524 |
| NlaIII | CATG | 5 cut(s) | 584, 671, 848, 998, 1592 |
| NlaIV | GGNNCC | 5 cut(s) | 453, 630, 831, 1119, 1560 |
| NmeAIII | GCCGAG | 1 cut(s) | 1476 |
| NsiI | ATGCAT | 1 cut(s) | 911 |
| NspI | RCATGY | 1 cut(s) | 848 |
| NspV | TTCGAA | 2 cut(s) | 78, 1322 |
| PaeR7I | CTCGAG | 1 cut(s) | 1369 |
| PagI | TCATGA | 1 cut(s) | 1588 |
| PaqCI | CACCTGC | 2 cut(s) | 113, 992 |
| PciSI | GCTCTTC | 5 cut(s) | 75, 414, 1080, 1119, 1440 |
| PctI | GAATGC | 2 cut(s) | 124, 1138 |
| PfeI | GAWTC | 6 cut(s) | 176, 497, 524, 899, 1190, 1565 |
| PkrI | GCNGC | 1 cut(s) | 411 |
| PleI | GAGTC | 1 cut(s) | 1561 |
| PpsI | GAGTC | 1 cut(s) | 1561 |
| Psp124BI | GAGCTC | 4 cut(s) | 87, 273, 435, 1101 |
| Psp1406I | AACGTT | 1 cut(s) | 389 |
| PspN4I | GGNNCC | 5 cut(s) | 453, 630, 831, 1119, 1560 |
| PspXI | VCTCGAGB | 1 cut(s) | 1369 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1568 |
| PvuII | CAGCTG | 5 cut(s) | 8, 356, 409, 731, 1022 |
| RsaI | GTAC | 1 cut(s) | 1500 |
| RsaNI | GTAC | 1 cut(s) | 1499 |
| RseI | CAYNNNNRTG | 1 cut(s) | 849 |
| SacI | GAGCTC | 4 cut(s) | 87, 273, 435, 1101 |
| SapI | GCTCTTC | 5 cut(s) | 75, 414, 1080, 1119, 1440 |
| SaqAI | TTAA | 3 cut(s) | 156, 813, 1043 |
| SatI | GCNGC | 1 cut(s) | 410 |
| Sau3AI | GATC | 5 cut(s) | 220, 289, 943, 1311, 1524 |
| SchI | GAGTC | 1 cut(s) | 1562 |
| ScrFI | CCNGG | 2 cut(s) | 1092, 1093 |
| SduI | GDGCHC | 7 cut(s) | 87, 273, 426, 435, 710, 1092, 1101 |
| SfaNI | GCATC | 4 cut(s) | 181, 248, 457, 971 |
| Sfr274I | CTCGAG | 1 cut(s) | 1369 |
| SfuI | TTCGAA | 2 cut(s) | 78, 1322 |
| SlaI | CTCGAG | 1 cut(s) | 1369 |
| SmaI | CCCGGG | 1 cut(s) | 1093 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 849 |
| SmlI | CTYRAG | 3 cut(s) | 233, 1369, 1491 |
| SmoI | CTYRAG | 3 cut(s) | 233, 1369, 1491 |
| Sse9I | AATT | 8 cut(s) | 210, 446, 608, 651, 873, 1044, 1112, 1375 |
| SspMI | CTAG | 2 cut(s) | 744, 804 |
| SstI | GAGCTC | 4 cut(s) | 87, 273, 435, 1101 |
| StyD4I | CCNGG | 2 cut(s) | 1090, 1091 |
| StyI | CCWWGG | 4 cut(s) | 258, 336, 981, 1502 |
| TaaI | ACNGT | 1 cut(s) | 919 |
| TaiI | ACGT | 3 cut(s) | 392, 626, 664 |
| TaqI | TCGA | 4 cut(s) | 78, 1062, 1322, 1370 |
| TaqII | GACCGA | 1 cut(s) | 1643 |
| TasI | AATT | 8 cut(s) | 210, 446, 608, 651, 873, 1044, 1112, 1375 |
| TfiI | GAWTC | 6 cut(s) | 176, 497, 524, 899, 1190, 1565 |
| Tru1I | TTAA | 3 cut(s) | 156, 813, 1043 |
| Tru9I | TTAA | 3 cut(s) | 156, 813, 1043 |
| TscAI | CASTG | 3 cut(s) | 193, 1207, 1657 |
| TseI | GCWGC | 1 cut(s) | 409 |
| TspGWI | ACGGA | 2 cut(s) | 494, 1544 |
| TspMI | CCCGGG | 1 cut(s) | 1091 |
| TspRI | CASTG | 3 cut(s) | 193, 1207, 1657 |
| XapI | RAATTY | 2 cut(s) | 651, 873 |
| XceI | RCATGY | 1 cut(s) | 848 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 874 |
| XhoI | CTCGAG | 1 cut(s) | 1369 |
| XmaI | CCCGGG | 1 cut(s) | 1091 |
| XspI | CTAG | 2 cut(s) | 744, 804 |
| Zsp2I | ATGCAT | 1 cut(s) | 911 |