Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001371

Physical Location & Seq

Genomic Coordinates Reverse (-)

32521941 .. 32532039

Gene Structure 10099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG196000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCTTTCTATGACTCAGCGCCTCTAGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTAGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTAGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGTTCAGAACATACAATAGAAGTTCCAGGGACCATAGTCCAGATGAAGCAAAGGGAAAGATTCAGGAGACAGCTATTCATTTGCGGATTGAAAATCAGGGAGATAAAATGAACTGTGAAAATGGCGCAACTGAAGGCACATATCTAGCAGAAAAGTTCCACAAATTGAGGAATCTTGATTTTAATCACACCACAAGCGCAAACCAGAGTCACAGAAACATGCATGTGAAAGAAGTGTCGAAACAAAGTATCTCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

155

Amino Acids

17.45

Weight (kDa)

7.85

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40450 AT5G40450
fragaria_vesca	FvH4_6g51240 FvH4_6g51240 FvH4_6g51240
malus_domestica	MD09G1027400.v1.1 MD17G1027400.v1.1
prunus_persica	Prupe.3G291300_v2.0.a1 Prupe.3G291300_v2.0.a1
pyrus_communis	pycom111g02140 pycom17g02230 pycom17g02240 pycom17g02250
rosa_chinensis	RchiOBHm_Chr2g0172841 RchiOBHm_Chr2g0172861 RchiOBHm_Chr5g0078711 RchiOBHm_Chr7g0216841
rosa_laevigata	RLG00000021670 RLG00000022134 RLG00000028205
rosa_multiflora	Rmu_co8257395.1_g000001 Rmu_sc0002979.1_g000007 Rmu_sc0024990.1_g000001 Rmu_sc0036573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079480 Rroxscaffold_5G00333390 Rroxscaffold_7G00202120
rosa_rugosa	Rorug02G0562000 Rorug02G0562100 Rorug02G0562200 Rorug02G0562300 Rorug02G0562400 Rorug02G0562500 Rorug02G0562600 Rorug02G0562700 Rorug02G0562800 Rorug02G0562900 Rorug02G0562900 Rorug03G0301200 Rorug05G0513600
rosa_samantha	Rh1CG021300 Rh2AG639700 Rh2BG653100 Rh2CG618900 Rh2DG666800 Rh4AG006000 Rh4DG005000 Rh4DG005300 Rh4DG126700 Rh6CG196000
rosa_wichuraiana	Rw2G052810 Rw5G035440 Rw6G002440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	110, 146, 205, 281
AluI	AGCT	4 cut(s)	110, 146, 205, 281
Alw26I	GTCTC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	146
AspLEI	GCGC	3 cut(s)	22, 335, 407
AspS9I	GGNCC	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	235
BciVI	GTATCC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	4 cut(s)	26, 92, 143, 353
BfmI	CTRYAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	27
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	235
BoxI	GACNNNNGTC	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	234
BseJI	GATNNNNATC	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	55, 70
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	55, 70
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	210, 323
BstDEI	CTNAG	4 cut(s)	16, 38, 59, 134
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	3 cut(s)	22, 335, 407
BstKTI	GATC	2 cut(s)	58, 73
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	55, 70
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	2 cut(s)	430, 434
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	27
CfoI	GCGC	3 cut(s)	22, 335, 407
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	3 cut(s)	156, 427, 431
CviJI	RGCY	5 cut(s)	90, 110, 146, 205, 281
CviKI_1	RGCY	5 cut(s)	90, 110, 146, 205, 281
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	4 cut(s)	16, 38, 59, 134
DpnI	GATC	2 cut(s)	57, 72
DpnII	GATC	2 cut(s)	55, 70
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	233
EcoT22I	ATGCAT	1 cut(s)	432
FaeI	CATG	3 cut(s)	159, 430, 434
FaiI	YATR	9 cut(s)	12, 116, 157, 179, 220, 243, 349, 428, 432
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	155, 426, 430
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	4 cut(s)	26, 92, 143, 353
GlaI	GCGC	3 cut(s)	21, 334, 406
GluI	GCNGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	23
HhaI	GCGC	3 cut(s)	22, 335, 407
Hin1II	CATG	3 cut(s)	159, 430, 434
Hin6I	GCGC	3 cut(s)	20, 333, 405
HinP1I	GCGC	3 cut(s)	20, 333, 405
HinfI	GANTC	4 cut(s)	14, 268, 379, 415
Hpy188I	TCNGA	2 cut(s)	55, 215
Hpy188III	TCNNGA	4 cut(s)	74, 248, 272, 383
HpyAV	CCTTC	2 cut(s)	24, 335
HpyCH4III	ACNGT	2 cut(s)	210, 323
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	4 cut(s)	16, 38, 59, 134
Hsp92II	CATG	3 cut(s)	159, 430, 434
HspAI	GCGC	3 cut(s)	20, 333, 405
Kzo9I	GATC	2 cut(s)	55, 70
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	8 cut(s)	179, 179, 220, 247, 257, 261, 290, 425
Lsp1109I	GCAGC	1 cut(s)	133
MaeI	CTAG	4 cut(s)	26, 92, 143, 353
MaeIII	GTNAC	2 cut(s)	151, 416
MalI	GATC	2 cut(s)	57, 72
MboI	GATC	2 cut(s)	55, 70
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	3 cut(s)	198, 371, 463
MlyI	GAGTC	2 cut(s)	8, 424
MnlI	CCTC	2 cut(s)	33, 369
Mph1103I	ATGCAT	1 cut(s)	432
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	2 cut(s)	182, 431
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	55, 70
NlaIII	CATG	3 cut(s)	159, 430, 434
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	432
NspI	RCATGY	2 cut(s)	430, 434
PfeI	GAWTC	2 cut(s)	268, 379
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	8, 423
PpsI	GAGTC	2 cut(s)	8, 423
PshAI	GACNNNNGTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	2 cut(s)	182, 431
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	55, 70
Sau96I	GGNCC	1 cut(s)	238
ScaI	AGTACT	1 cut(s)	141
SchI	GAGTC	2 cut(s)	8, 424
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	4 cut(s)	112, 148, 207, 283
SfcI	CTRYAG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	182, 431
Sse9I	AATT	3 cut(s)	198, 371, 463
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	4 cut(s)	26, 92, 143, 353
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	210, 323
TaqI	TCGA	1 cut(s)	446
TasI	AATT	3 cut(s)	198, 371, 463
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	268, 379
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	39, 267, 275, 332
VpaK11BI	GGWCC	1 cut(s)	238
XceI	RCATGY	2 cut(s)	430, 434
XspI	CTAG	4 cut(s)	26, 92, 143, 353
ZrmI	AGTACT	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.