Rorug05G0513600
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
69855340 .. 69855681
342 bp
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UTR
Exon/CDS
Intron
Rorug05G0513600.1

Sequence Viewer

Length: 255 bp
ATGACATTTCCGGCGAGATGTTCGACTAGCTCCGACGAGATGTTCGACGGGCTCGAACAAAGCGACGATGAAATTGAAATGGAGTCGTCTGTGGCTGATGCAGAGTCGGCGATTCGGGACGAGGAATTCAGGTGGCAGAGAGTGGAGAAGCTCTGCGAAGATGTGAAGCAGTTCGGCGAGGAAATGATTGACGATGGCTGTCTCGCCTCTATCTACGATTTCCGAATCGATAAATTTCAGGTGCATTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

84

Amino Acids

9.84

Weight (kDa)

4.07

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 125, 233
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 2 cut(s) 30, 151
AluI AGCT 2 cut(s) 30, 151
Alw26I GTCTC 1 cut(s) 206
ApoI RAATTY 2 cut(s) 125, 233
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
Asp700I GAANNNNTTC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 54
BccI CCATC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 27
BmsI GCATC 1 cut(s) 88
Bsa29I ATCGAT 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 228
BshVI ATCGAT 1 cut(s) 228
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 54
BspDI ATCGAT 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 107
Bsu15I ATCGAT 1 cut(s) 228
BsuTUI ATCGAT 1 cut(s) 228
ClaI ATCGAT 1 cut(s) 228
CviJI RGCY 5 cut(s) 30, 52, 95, 151, 198
CviKI_1 RGCY 5 cut(s) 30, 52, 95, 151, 198
Eco24I GRGCYC 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 54
FaqI GGGAC 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 54
FspBI CTAG 1 cut(s) 27
HapII CCGG 1 cut(s) 11
HinfI GANTC 4 cut(s) 83, 104, 112, 225
HpaII CCGG 1 cut(s) 11
Hpy188I TCNGA 2 cut(s) 34, 224
Hpy188III TCNNGA 1 cut(s) 116
Hpy99I CGWCG 3 cut(s) 38, 50, 68
HpyCH4V TGCA 2 cut(s) 101, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 3 cut(s) 24, 115, 224
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 27
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 3 cut(s) 72, 125, 233
MlyI GAGTC 2 cut(s) 92, 113
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 115, 172, 217
MroXI GAANNNNTTC 1 cut(s) 170
MspI CCGG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 3 cut(s) 42, 51, 60
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 112, 225
PleI GAGTC 2 cut(s) 91, 112
PpsI GAGTC 2 cut(s) 91, 112
SchI GAGTC 2 cut(s) 92, 113
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 32, 134, 153, 243
SfaNI GCATC 1 cut(s) 88
Sse9I AATT 3 cut(s) 72, 125, 233
SspMI CTAG 1 cut(s) 27
TaqI TCGA 4 cut(s) 23, 45, 54, 228
TasI AATT 3 cut(s) 72, 125, 233
TfiI GAWTC 2 cut(s) 112, 225
TspDTI ATGAA 1 cut(s) 84
XapI RAATTY 2 cut(s) 125, 233
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.