Rorug02G0562500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001371
Physical Location & Seq
Forward (+)
68780692 .. 68782836
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0562500.1

Sequence Viewer

Length: 528 bp
ATGGGATTTGCAATCTATTACAATCTGTATCCTAACAATAGACATGGAGCTCAGAGAAATGGAGTTTCTGTAGCTGTATTCAGACTGAAAGATTGTGTGGACATCTCTATACCAAAGCGTTCCACCTCACCATCGTCAAAGATAACTGTGTTATGGTCTTTGTTTAATAGAAAGAGCGAGATAGATGCTATTCGTGCTAAAGACATCCCTCAAGGTGGATTGACTCAAGGGCAAGAAACTCAGATCGCTCGAAATGAACAAAGAACAGAACAGATCCTAGAAGAGCTTGACAATTTGGAAGAGACCCTGAATGAGAGTATTCGAGAAAGTTTAGGTGCACGTGTAGGGAAGCAATCTCTTGGTAAGAAGAAAGGAGCAATTGAAGAAGAAGAACTTTTGAGTGATGATGAAGAATTTTATGATCGAGCAAAGAAGCCTTCTAGCACAATGGCAAGTGAAAACCAATCAATTGAAATCTTTGATAAGAGAGATGCAATCACGGAAGAAATCTTTCTTATGCGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.83

Weight (kDa)

5.14

Isoelectric Point (pI)

62.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 413
AcvI CACGTG 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 2 cut(s) 383, 473
AluBI AGCT 3 cut(s) 50, 74, 286
AluI AGCT 3 cut(s) 50, 74, 286
Alw21I GWGCWC 2 cut(s) 52, 340
Alw26I GTCTC 1 cut(s) 296
Alw44I GTGCAC 1 cut(s) 336
AlwI GGATC 1 cut(s) 268
ApaLI GTGCAC 1 cut(s) 336
ApoI RAATTY 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 510
AsuHPI GGTGA 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 52, 340
BccI CCATC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 2 cut(s) 278, 441
BfmI CTRYAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 39
BmsI GCATC 2 cut(s) 175, 481
BpuEI CTTGAG 2 cut(s) 195, 210
BsaAI YACGTR 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 2 cut(s) 65, 254
BseSI GKGCMC 1 cut(s) 340
BsiHKAI GWGCWC 2 cut(s) 52, 340
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 52, 340
Bsp143I GATC 3 cut(s) 243, 273, 421
BspCNI CTCAG 2 cut(s) 64, 253
BspPI GGATC 1 cut(s) 268
BspQI GCTCTTC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 296
BssMI GATC 3 cut(s) 243, 273, 421
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 276, 294
BstBAI YACGTR 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 51, 240
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 3 cut(s) 246, 276, 424
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 243, 273, 421
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuI GTATCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 204
CviAII CATG 1 cut(s) 44
CviJI RGCY 4 cut(s) 50, 74, 286, 436
CviKI_1 RGCY 4 cut(s) 50, 74, 286, 436
DdeI CTNAG 2 cut(s) 51, 240
DpnI GATC 3 cut(s) 245, 275, 423
DpnII GATC 3 cut(s) 243, 273, 421
Eam1104I CTCTTC 2 cut(s) 276, 294
EarI CTCTTC 2 cut(s) 276, 294
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 50
Eco72I CACGTG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 47
FaiI YATR 5 cut(s) 45, 110, 154, 420, 518
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 1 cut(s) 43
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 2 cut(s) 278, 441
Hin1II CATG 1 cut(s) 47
HinfI GANTC 1 cut(s) 223
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 100, 338
Hpy188I TCNGA 3 cut(s) 54, 83, 243
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 2 cut(s) 100, 338
HpyAV CCTTC 1 cut(s) 447
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 3 cut(s) 11, 338, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 51, 240
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 3 cut(s) 243, 273, 421
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 47, 374
LpnPI CCDG 1 cut(s) 320
LweI GCATC 2 cut(s) 175, 481
MaeI CTAG 2 cut(s) 278, 441
MaeII ACGT 1 cut(s) 340
MalI GATC 3 cut(s) 245, 275, 423
MboI GATC 3 cut(s) 243, 273, 421
MboII GAAGA 8 cut(s) 293, 311, 379, 395, 398, 401, 422, 515
MfeI CAATTG 2 cut(s) 378, 468
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 2 cut(s) 52, 340
MluCI AATT 4 cut(s) 292, 378, 413, 468
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 3 cut(s) 136, 219, 515
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 1 cut(s) 165
MunI CAATTG 2 cut(s) 378, 468
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 3 cut(s) 243, 273, 421
NlaIII CATG 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 510
PleI GAGTC 1 cut(s) 217
PmaCI CACGTG 1 cut(s) 341
PmlI CACGTG 1 cut(s) 341
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 52
PspCI CACGTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 273
SacI GAGCTC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 3 cut(s) 243, 273, 421
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 2 cut(s) 52, 340
SetI ASST 7 cut(s) 52, 76, 128, 217, 288, 337, 343
SfaNI GCATC 2 cut(s) 175, 481
SfcI CTRYAG 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 210, 225
SmoI CTYRAG 2 cut(s) 210, 225
Sse9I AATT 4 cut(s) 292, 378, 413, 468
SspMI CTAG 2 cut(s) 278, 441
SstI GAGCTC 1 cut(s) 52
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 343
TaqI TCGA 3 cut(s) 250, 322, 424
TasI AATT 4 cut(s) 292, 378, 413, 468
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 270, 423
TspGWI ACGGA 1 cut(s) 515
VneI GTGCAC 1 cut(s) 336
XapI RAATTY 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 2 cut(s) 278, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.