Rh1CG021300
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001371
Physical Location & Seq
Reverse (-)
3571930 .. 3583736
11807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG021300.1

Sequence Viewer

Length: 570 bp
ATGCCATTGACATCCATCCTCTTCGCGCTTCAATTCGCTCGCCCTATCTATCCGCGAGCTGCGCTGGCAGTTGTTGGTGGCGGTCCAGTAGGTGTGGAGCTTGCTGCAGAGCTTCGTGACTTTGTAGTTATCCATTACTGTTTGAAACAAGATCAGTTACAACATTTGCTGAAGAAAAGTTCTCCAGAGATGCTTACTTCTGAAAGCATATGCCTTCAAACAAAATCATTGCAAAGTCTTGGGAGGCTTAAAGTACTTTCCAAAGAGGCCTTGGCAAAGAAACAATCCACCAAAACTAGAGAGGCTGTTGAATTATTGTCAACAGGAAAGAGCTATATTGGTGCAGCTAATGAAAGACTAGACAATGTGTTCGGCAATGTCACCAATCAGCGAGGTATGGTTCTTCCTTTTGAACCGCTCTCAGCTACATCTGATAAAATAAGATATGCTGTTGACATGCCACAGTTCCACAAATTGAGGAATCTTGATTTTAATCACACCACAAGCGCAAACCAGAGTCACAGAAACATGCATGTGAAAGAAGTGTCGAAACAAAGTATCTCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

189

Amino Acids

20.99

Weight (kDa)

9.63

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 418
AccII CGCG 2 cut(s) 26, 55
AciI CCGC 3 cut(s) 53, 81, 416
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 255
AgsI TTSAA 5 cut(s) 32, 145, 218, 311, 413
AluBI AGCT 6 cut(s) 59, 100, 112, 333, 347, 425
AluI AGCT 6 cut(s) 59, 100, 112, 333, 347, 425
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 3 cut(s) 59, 104, 344
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AspLEI GCGC 3 cut(s) 28, 64, 509
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 1 cut(s) 83
BbvI GCAGC 3 cut(s) 46, 91, 356
BccI CCATC 1 cut(s) 23
BfaI CTAG 2 cut(s) 297, 359
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 3 cut(s) 60, 105, 345
BlsI GCNGC 3 cut(s) 61, 106, 346
BmcAI AGTACT 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmsI GCATC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 2 cut(s) 227, 382
Bse8I GATNNNNATC 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 11, 15
BseJI GATNNNNATC 1 cut(s) 492
BseMI GCAATG 2 cut(s) 227, 382
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 3 cut(s) 46, 91, 356
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 2 cut(s) 26, 55
BshFI GGCC 1 cut(s) 269
BsnI GGCC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 3 cut(s) 53, 81, 416
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 434
BspFNI CGCG 2 cut(s) 26, 55
BspMAI CTGCAG 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 418
BsrDI GCAATG 2 cut(s) 227, 382
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 140, 465
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 4 cut(s) 40, 57, 66, 102
BstDEI CTNAG 1 cut(s) 421
BstF5I GGATG 2 cut(s) 11, 15
BstFNI CGCG 2 cut(s) 26, 55
BstHHI GCGC 3 cut(s) 28, 64, 509
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 61, 65
BstNSI RCATGY 3 cut(s) 460, 532, 536
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 2 cut(s) 26, 55
BstV1I GCAGC 3 cut(s) 46, 91, 356
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 2 cut(s) 11, 15
Cac8I GCNNGC 4 cut(s) 40, 57, 66, 102
CfoI GCGC 3 cut(s) 28, 64, 509
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 254
CviAII CATG 3 cut(s) 457, 529, 533
CviJI RGCY 9 cut(s) 59, 100, 112, 247, 269, 305, 333, 347, 425
CviKI_1 RGCY 9 cut(s) 59, 100, 112, 247, 269, 305, 333, 347, 425
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 1 cut(s) 421
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 460, 532, 536
FaiI YATR 8 cut(s) 209, 211, 336, 398, 447, 458, 530, 534
FatI CATG 3 cut(s) 456, 528, 532
FauNDI CATATG 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 60, 105, 345
FokI GGATG 1 cut(s) 2
Fsp4HI GCNGC 3 cut(s) 60, 105, 345
FspBI CTAG 2 cut(s) 297, 359
GlaI GCGC 3 cut(s) 27, 63, 508
GluI GCNGC 3 cut(s) 60, 105, 345
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 269
HhaI GCGC 3 cut(s) 28, 64, 509
Hin1II CATG 3 cut(s) 460, 532, 536
Hin6I GCGC 3 cut(s) 26, 62, 507
HinP1I GCGC 3 cut(s) 26, 62, 507
HincII GTYRAC 2 cut(s) 321, 454
HindII GTYRAC 2 cut(s) 321, 454
HinfI GANTC 2 cut(s) 481, 517
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 321, 454
Hpy188I TCNGA 2 cut(s) 202, 433
Hpy188III TCNNGA 3 cut(s) 116, 185, 485
Hpy8I GTNNAC 2 cut(s) 321, 454
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 140, 465
HpyCH4V TGCA 4 cut(s) 107, 232, 344, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 65
HpyF3I CTNAG 1 cut(s) 421
Hsp92II CATG 3 cut(s) 460, 532, 536
HspAI GCGC 3 cut(s) 26, 62, 507
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 50, 99, 198, 309, 527
Lsp1109I GCAGC 3 cut(s) 46, 91, 356
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 297, 359
MaeIII GTNAC 4 cut(s) 116, 156, 379, 518
MalI GATC 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 418
MboI GATC 1 cut(s) 151
MboII GAAGA 3 cut(s) 13, 184, 395
MluCI AATT 4 cut(s) 32, 311, 473, 565
MlyI GAGTC 1 cut(s) 526
MnlI CCTC 6 cut(s) 29, 237, 259, 295, 386, 471
Mph1103I ATGCAT 1 cut(s) 534
MseI TTAA 2 cut(s) 249, 492
MslI CAYNNNNRTG 1 cut(s) 533
MvnI CGCG 2 cut(s) 26, 55
MwoI GCNNNNNNNGC 2 cut(s) 61, 65
NdeI CATATG 1 cut(s) 209
NdeII GATC 1 cut(s) 151
NlaIII CATG 3 cut(s) 460, 532, 536
NmuCI GTSAC 3 cut(s) 116, 379, 518
NsiI ATGCAT 1 cut(s) 534
NspI RCATGY 3 cut(s) 460, 532, 536
PceI AGGCCT 1 cut(s) 269
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 3 cut(s) 61, 106, 346
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PspPI GGNCC 1 cut(s) 83
PstI CTGCAG 1 cut(s) 109
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 2 cut(s) 249, 492
SatI GCNGC 3 cut(s) 60, 105, 345
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 83
ScaI AGTACT 1 cut(s) 255
SchI GAGTC 1 cut(s) 526
SetI ASST 8 cut(s) 61, 94, 102, 114, 335, 349, 397, 427
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 533
Sse9I AATT 4 cut(s) 32, 311, 473, 565
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 3 cut(s) 53, 81, 416
SspMI CTAG 2 cut(s) 297, 359
StuI AGGCCT 1 cut(s) 269
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 140, 465
TaqI TCGA 1 cut(s) 548
TasI AATT 4 cut(s) 32, 311, 473, 565
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 2 cut(s) 249, 492
Tru9I TTAA 2 cut(s) 249, 492
TseFI GTSAC 3 cut(s) 116, 379, 518
TseI GCWGC 3 cut(s) 59, 104, 344
Tsp45I GTSAC 3 cut(s) 116, 379, 518
TspDTI ATGAA 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 83
XceI RCATGY 3 cut(s) 460, 532, 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XspI CTAG 2 cut(s) 297, 359
ZrmI AGTACT 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.