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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 14723, 15602, 16778 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 89, 10885 |
| AatII | GACGTC | 1 cut(s) | 5553 |
| Acc16I | TGCGCA | 1 cut(s) | 186 |
| Acc65I | GGTACC | 2 cut(s) | 14212, 16267 |
| AccB1I | GGYRCC | 4 cut(s) | 782, 14212, 15238, 16267 |
| AccI | GTMKAC | 2 cut(s) | 851, 17963 |
| AclI | AACGTT | 3 cut(s) | 10784, 11666, 14999 |
| AclWI | GGATC | 3 cut(s) | 147, 3988, 11703 |
| AcoI | YGGCCR | 1 cut(s) | 12091 |
| AcyI | GRCGYC | 2 cut(s) | 5550, 10113 |
| AflII | CTTAAG | 1 cut(s) | 13190 |
| AgeI | ACCGGT | 4 cut(s) | 154, 1391, 10909, 16069 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3445, 5686 |
| AhlI | ACTAGT | 3 cut(s) | 581, 854, 12884 |
| AjiI | CACGTC | 8 cut(s) | 1891, 3781, 6022, 7564, 9721, 9922, 14260, 16895 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1167, 1199, 17491, 17523 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 609, 641 |
| Alw44I | GTGCAC | 1 cut(s) | 13839 |
| AlwI | GGATC | 3 cut(s) | 147, 3988, 11703 |
| Ama87I | CYCGRG | 8 cut(s) | 1002, 4713, 6861, 8517, 12020, 13457, 15035, 15776 |
| ApaLI | GTGCAC | 1 cut(s) | 13839 |
| ArsI | GACNNNNNNTTYG | 9 cut(s) | 9353, 9385, 11754, 11786, 14669, 14701, 15836, 15868, 18305 |
| AsiGI | ACCGGT | 4 cut(s) | 154, 1391, 10909, 16069 |
| Asp718I | GGTACC | 2 cut(s) | 14212, 16267 |
| AspLEI | GCGC | 6 cut(s) | 187, 827, 884, 2632, 8737, 12601 |
| AspS9I | GGNCC | 4 cut(s) | 3322, 5660, 12067, 13765 |
| AsuII | TTCGAA | 6 cut(s) | 2377, 9354, 10958, 12333, 12866, 16496 |
| AvaI | CYCGRG | 8 cut(s) | 1002, 4713, 6861, 8517, 12020, 13457, 15035, 15776 |
| AvaII | GGWCC | 3 cut(s) | 3322, 12067, 13765 |
| AxyI | CCTNAGG | 4 cut(s) | 978, 6207, 17295, 18027 |
| BaeGI | GKGCMC | 3 cut(s) | 13843, 15243, 15643 |
| BanI | GGYRCC | 4 cut(s) | 782, 14212, 15238, 16267 |
| BauI | CACGAG | 2 cut(s) | 9559, 17136 |
| BbvCI | CCTCAGC | 8 cut(s) | 15, 1452, 1584, 3387, 5481, 5613, 7470, 16581 |
| BceAI | ACGGC | 8 cut(s) | 1797, 8973, 10317, 11072, 11658, 13613, 15671, 17803 |
| BciVI | GTATCC | 6 cut(s) | 43, 3514, 10642, 12313, 17947, 18155 |
| BclI | TGATCA | 6 cut(s) | 769, 11788, 14830, 15553, 16885, 17230 |
| BcuI | ACTAGT | 3 cut(s) | 581, 854, 12884 |
| BfmI | CTRYAG | 7 cut(s) | 351, 3878, 6119, 6945, 9036, 15870, 17049 |
| BfoI | RGCGCY | 1 cut(s) | 828 |
| BfrI | CTTAAG | 1 cut(s) | 13190 |
| BfuI | GTATCC | 6 cut(s) | 43, 3514, 10642, 12313, 17947, 18155 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 833 |
| BlpI | GCTNAGC | 1 cut(s) | 13869 |
| BmcAI | AGTACT | 6 cut(s) | 2299, 3919, 4219, 6160, 6352, 8005 |
| Bme18I | GGWCC | 3 cut(s) | 3322, 12067, 13765 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3445, 5686 |
| BmeT110I | CYCGRG | 8 cut(s) | 1002, 4713, 6861, 8517, 12020, 13457, 15035, 15776 |
| BmgBI | CACGTC | 8 cut(s) | 1891, 3781, 6022, 7564, 9721, 9922, 14260, 16895 |
| BmgT120I | GGNCC | 4 cut(s) | 3322, 5660, 12067, 13765 |
| BmrI | ACTGGG | 2 cut(s) | 101, 623 |
| BmuI | ACTGGG | 2 cut(s) | 101, 623 |
| BoxI | GACNNNNGTC | 1 cut(s) | 9480 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 4403, 4435, 6530, 6562, 17888, 17920 |
| Bpu10I | CCTNAGC | 9 cut(s) | 15, 1365, 1452, 1584, 3387, 5481, 5613, 7470, 16581 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 13869 |
| Bpu14I | TTCGAA | 6 cut(s) | 2377, 9354, 10958, 12333, 12866, 16496 |
| Bsa29I | ATCGAT | 3 cut(s) | 1731, 2073, 7746 |
| BsaHI | GRCGYC | 2 cut(s) | 5550, 10113 |
| BsaI | GGTCTC | 2 cut(s) | 392, 13583 |
| Bse118I | RCCGGY | 6 cut(s) | 154, 1391, 10909, 11623, 13157, 16069 |
| Bse21I | CCTNAGG | 4 cut(s) | 978, 6207, 17295, 18027 |
| Bse3DI | GCAATG | 9 cut(s) | 10618, 10741, 10981, 11020, 12133, 12941, 14516, 15886, 16571 |
| BseCI | ATCGAT | 3 cut(s) | 1731, 2073, 7746 |
| BseMI | GCAATG | 9 cut(s) | 10618, 10741, 10981, 11020, 12133, 12941, 14516, 15886, 16571 |
| BseSI | GKGCMC | 3 cut(s) | 13843, 15243, 15643 |
| BseYI | CCCAGC | 1 cut(s) | 3997 |
| Bsh1285I | CGRYCG | 1 cut(s) | 16957 |
| BshNI | GGYRCC | 4 cut(s) | 782, 14212, 15238, 16267 |
| BshTI | ACCGGT | 4 cut(s) | 154, 1391, 10909, 16069 |
| BshVI | ATCGAT | 3 cut(s) | 1731, 2073, 7746 |
| BsiEI | CGRYCG | 1 cut(s) | 16957 |
| BsiHKCI | CYCGRG | 8 cut(s) | 1002, 4713, 6861, 8517, 12020, 13457, 15035, 15776 |
| BslFI | GGGAC | 4 cut(s) | 1533, 4685, 5644, 8489 |
| BsmBI | CGTCTC | 5 cut(s) | 1589, 2052, 5618, 15161, 15617 |
| BsmFI | GGGAC | 4 cut(s) | 1533, 4685, 5644, 8489 |
| BsmI | GAATGC | 5 cut(s) | 417, 1838, 16442, 18009, 18262 |
| Bso31I | GGTCTC | 2 cut(s) | 392, 13583 |
| BsoBI | CYCGRG | 8 cut(s) | 1002, 4713, 6861, 8517, 12020, 13457, 15035, 15776 |
| Bsp119I | TTCGAA | 6 cut(s) | 2377, 9354, 10958, 12333, 12866, 16496 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 13869 |
| Bsp19I | CCATGG | 1 cut(s) | 13293 |
| Bsp68I | TCGCGA | 3 cut(s) | 12003, 13701, 15759 |
| BspDI | ATCGAT | 3 cut(s) | 1731, 2073, 7746 |
| BspHI | TCATGA | 8 cut(s) | 3088, 5314, 8017, 9118, 11791, 14902, 17164, 17584 |
| BspMAI | CTGCAG | 4 cut(s) | 3882, 6123, 6949, 17053 |
| BspPI | GGATC | 3 cut(s) | 147, 3988, 11703 |
| BspT104I | TTCGAA | 6 cut(s) | 2377, 9354, 10958, 12333, 12866, 16496 |
| BspT107I | GGYRCC | 4 cut(s) | 782, 14212, 15238, 16267 |
| BspTI | CTTAAG | 1 cut(s) | 13190 |
| BspTNI | GGTCTC | 2 cut(s) | 392, 13583 |
| BsrDI | GCAATG | 9 cut(s) | 10618, 10741, 10981, 11020, 12133, 12941, 14516, 15886, 16571 |
| BsrFI | RCCGGY | 6 cut(s) | 154, 1391, 10909, 11623, 13157, 16069 |
| BssAI | RCCGGY | 6 cut(s) | 154, 1391, 10909, 11623, 13157, 16069 |
| BssNAI | GTATAC | 1 cut(s) | 852 |
| BssNI | GRCGYC | 2 cut(s) | 5550, 10113 |
| BssSI | CACGAG | 2 cut(s) | 9559, 17136 |
| Bst1107I | GTATAC | 1 cut(s) | 852 |
| Bst2BI | CACGAG | 2 cut(s) | 9559, 17136 |
| BstACI | GRCGYC | 2 cut(s) | 5550, 10113 |
| BstAFI | CTTAAG | 1 cut(s) | 13190 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 5380, 13280, 13838, 14855, 16910 |
| BstBI | TTCGAA | 6 cut(s) | 2377, 9354, 10958, 12333, 12866, 16496 |
| BstDSI | CCRYGG | 7 cut(s) | 4752, 6900, 8556, 11931, 13293, 13629, 15687 |
| BstEII | GGTNACC | 1 cut(s) | 16088 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1583 |
| BstH2I | RGCGCY | 1 cut(s) | 828 |
| BstHHI | GCGC | 6 cut(s) | 187, 827, 884, 2632, 8737, 12601 |
| BstMCI | CGRYCG | 1 cut(s) | 16957 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 9480 |
| BstPI | GGTNACC | 1 cut(s) | 16088 |
| BstSFI | CTRYAG | 7 cut(s) | 351, 3878, 6119, 6945, 9036, 15870, 17049 |
| BstSLI | GKGCMC | 3 cut(s) | 13843, 15243, 15643 |
| BstX2I | RGATCY | 2 cut(s) | 3993, 11695 |
| BstYI | RGATCY | 2 cut(s) | 3993, 11695 |
| BstZ17I | GTATAC | 1 cut(s) | 852 |
| Bsu15I | ATCGAT | 3 cut(s) | 1731, 2073, 7746 |
| Bsu36I | CCTNAGG | 4 cut(s) | 978, 6207, 17295, 18027 |
| BsuI | GTATCC | 6 cut(s) | 43, 3514, 10642, 12313, 17947, 18155 |
| BsuTUI | ATCGAT | 3 cut(s) | 1731, 2073, 7746 |
| BtgI | CCRYGG | 7 cut(s) | 4752, 6900, 8556, 11931, 13293, 13629, 15687 |
| BtrI | CACGTC | 8 cut(s) | 1891, 3781, 6022, 7564, 9721, 9922, 14260, 16895 |
| BtsI | GCAGTG | 8 cut(s) | 510, 10057, 13439, 13593, 13831, 15014, 17069, 17196 |
| BtuMI | TCGCGA | 3 cut(s) | 12003, 13701, 15759 |
| CciI | TCATGA | 8 cut(s) | 3088, 5314, 8017, 9118, 11791, 14902, 17164, 17584 |
| CfoI | GCGC | 6 cut(s) | 187, 827, 884, 2632, 8737, 12601 |
| Cfr10I | RCCGGY | 6 cut(s) | 154, 1391, 10909, 11623, 13157, 16069 |
| Cfr13I | GGNCC | 4 cut(s) | 3322, 5660, 12067, 13765 |
| Cfr42I | CCGCGG | 4 cut(s) | 4755, 6903, 8559, 11934 |
| Cfr9I | CCCGGG | 2 cut(s) | 1002, 13457 |
| ClaI | ATCGAT | 3 cut(s) | 1731, 2073, 7746 |
| CseI | GACGC | 4 cut(s) | 3435, 5676, 10121, 16304 |
| CspAI | ACCGGT | 4 cut(s) | 154, 1391, 10909, 16069 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 906, 941 |
| DraI | TTTAAA | 1 cut(s) | 15424 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 89, 10885 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3445, 5686 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 89, 10885 |
| EaeI | YGGCCR | 1 cut(s) | 12091 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3445, 5686 |
| EciI | GGCGGA | 3 cut(s) | 25, 72, 4224 |
| Ecl136II | GAGCTC | 8 cut(s) | 13120, 13306, 13465, 14695, 14881, 15043, 16936, 17098 |
| Eco31I | GGTCTC | 2 cut(s) | 392, 13583 |
| Eco32I | GATATC | 7 cut(s) | 2515, 6908, 8221, 11470, 12909, 14484, 16539 |
| Eco47I | GGWCC | 3 cut(s) | 3322, 12067, 13765 |
| Eco53kI | GAGCTC | 8 cut(s) | 13120, 13306, 13465, 14695, 14881, 15043, 16936, 17098 |
| Eco81I | CCTNAGG | 4 cut(s) | 978, 6207, 17295, 18027 |
| Eco88I | CYCGRG | 8 cut(s) | 1002, 4713, 6861, 8517, 12020, 13457, 15035, 15776 |
| Eco91I | GGTNACC | 1 cut(s) | 16088 |
| EcoICRI | GAGCTC | 8 cut(s) | 13120, 13306, 13465, 14695, 14881, 15043, 16936, 17098 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1583 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3322, 12067, 13765 |
| EcoO65I | GGTNACC | 1 cut(s) | 16088 |
| EcoRI | GAATTC | 7 cut(s) | 2653, 6700, 8359, 12153, 12806, 14381, 17691 |
| EcoRV | GATATC | 7 cut(s) | 2515, 6908, 8221, 11470, 12909, 14484, 16539 |
| Esp3I | CGTCTC | 5 cut(s) | 1589, 2052, 5618, 15161, 15617 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 720, 752, 13173, 13205, 13905, 13937, 15960, 15992 |
| FaqI | GGGAC | 4 cut(s) | 1533, 4685, 5644, 8489 |
| FauI | CCCGC | 3 cut(s) | 1456, 6895, 16678 |
| FauNDI | CATATG | 5 cut(s) | 9253, 10873, 12388, 13963, 16018 |
| FbaI | TGATCA | 6 cut(s) | 769, 11788, 14830, 15553, 16885, 17230 |
| FblI | GTMKAC | 2 cut(s) | 851, 17963 |
| FspI | TGCGCA | 1 cut(s) | 186 |
| GlaI | GCGC | 6 cut(s) | 186, 826, 883, 2631, 8736, 12600 |
| GsaI | CCCAGC | 1 cut(s) | 4001 |
| HaeII | RGCGCY | 1 cut(s) | 828 |
| HgaI | GACGC | 4 cut(s) | 3435, 5676, 10121, 16304 |
| HhaI | GCGC | 6 cut(s) | 187, 827, 884, 2632, 8737, 12601 |
| Hin1I | GRCGYC | 2 cut(s) | 5550, 10113 |
| Hin6I | GCGC | 6 cut(s) | 185, 825, 882, 2630, 8735, 12599 |
| HinP1I | GCGC | 6 cut(s) | 185, 825, 882, 2630, 8735, 12599 |
| HincII | GTYRAC | 6 cut(s) | 94, 256, 3124, 5350, 10657, 11848 |
| HindII | GTYRAC | 6 cut(s) | 94, 256, 3124, 5350, 10657, 11848 |
| HpaI | GTTAAC | 1 cut(s) | 10657 |
| Hsp92I | GRCGYC | 2 cut(s) | 5550, 10113 |
| HspAI | GCGC | 6 cut(s) | 185, 825, 882, 2630, 8735, 12599 |
| KpnI | GGTACC | 2 cut(s) | 14216, 16271 |
| Ksp22I | TGATCA | 6 cut(s) | 769, 11788, 14830, 15553, 16885, 17230 |
| KspAI | GTTAAC | 1 cut(s) | 10657 |
| KspI | CCGCGG | 4 cut(s) | 4755, 6903, 8559, 11934 |
| MfeI | CAATTG | 3 cut(s) | 113, 10638, 17919 |
| MflI | RGATCY | 2 cut(s) | 3993, 11695 |
| MspCI | CTTAAG | 1 cut(s) | 13190 |
| MunI | CAATTG | 3 cut(s) | 113, 10638, 17919 |
| Mva1269I | GAATGC | 5 cut(s) | 417, 1838, 16442, 18009, 18262 |
| NcoI | CCATGG | 1 cut(s) | 13293 |
| NdeI | CATATG | 5 cut(s) | 9253, 10873, 12388, 13963, 16018 |
| NmeAIII | GCCGAG | 4 cut(s) | 3712, 5953, 12119, 17472 |
| NruI | TCGCGA | 3 cut(s) | 12003, 13701, 15759 |
| NsbI | TGCGCA | 1 cut(s) | 186 |
| NspV | TTCGAA | 6 cut(s) | 2377, 9354, 10958, 12333, 12866, 16496 |
| PaeI | GCATGC | 7 cut(s) | 4937, 7085, 8741, 12249, 12752, 14327, 16382 |
| PaeR7I | CTCGAG | 3 cut(s) | 4713, 6861, 8517 |
| PagI | TCATGA | 8 cut(s) | 3088, 5314, 8017, 9118, 11791, 14902, 17164, 17584 |
| PaqCI | CACCTGC | 3 cut(s) | 14723, 15602, 16778 |
| PciI | ACATGT | 8 cut(s) | 4675, 4940, 6823, 7088, 8479, 8744, 10916, 15817 |
| PctI | GAATGC | 5 cut(s) | 417, 1838, 16442, 18009, 18262 |
| PflFI | GACNNNGTC | 3 cut(s) | 2237, 4154, 18319 |
| PfoI | TCCNGGA | 5 cut(s) | 2847, 12069, 12279, 13767, 15822 |
| PinAI | ACCGGT | 4 cut(s) | 154, 1391, 10909, 16069 |
| Ple19I | CGATCG | 1 cut(s) | 16957 |
| PpuMI | RGGWCCY | 3 cut(s) | 3322, 12067, 13765 |
| PscI | ACATGT | 8 cut(s) | 4675, 4940, 6823, 7088, 8479, 8744, 10916, 15817 |
| PshAI | GACNNNNGTC | 1 cut(s) | 9480 |
| Psp124BI | GAGCTC | 8 cut(s) | 13122, 13308, 13467, 14697, 14883, 15045, 16938, 17100 |
| Psp1406I | AACGTT | 3 cut(s) | 10784, 11666, 14999 |
| Psp5II | RGGWCCY | 3 cut(s) | 3322, 12067, 13765 |
| PspEI | GGTNACC | 1 cut(s) | 16088 |
| PspFI | CCCAGC | 1 cut(s) | 3997 |
| PspPI | GGNCC | 4 cut(s) | 3322, 5660, 12067, 13765 |
| PspPPI | RGGWCCY | 3 cut(s) | 3322, 12067, 13765 |
| PsrI | GAACNNNNNNTAC | 6 cut(s) | 4665, 4697, 6813, 6845, 8469, 8501 |
| PstI | CTGCAG | 4 cut(s) | 3882, 6123, 6949, 17053 |
| PsuI | RGATCY | 2 cut(s) | 3993, 11695 |
| PsyI | GACNNNGTC | 3 cut(s) | 2237, 4154, 18319 |
| PvuI | CGATCG | 1 cut(s) | 16957 |
| RruI | TCGCGA | 3 cut(s) | 12003, 13701, 15759 |
| SacI | GAGCTC | 8 cut(s) | 13122, 13308, 13467, 14697, 14883, 15045, 16938, 17100 |
| SacII | CCGCGG | 4 cut(s) | 4755, 6903, 8559, 11934 |
| Sau96I | GGNCC | 4 cut(s) | 3322, 5660, 12067, 13765 |
| SbfI | CCTGCAGG | 2 cut(s) | 3882, 6123 |
| ScaI | AGTACT | 6 cut(s) | 2299, 3919, 4219, 6160, 6352, 8005 |
| SdaI | CCTGCAGG | 2 cut(s) | 3882, 6123 |
| SfcI | CTRYAG | 7 cut(s) | 351, 3878, 6119, 6945, 9036, 15870, 17049 |
| Sfr274I | CTCGAG | 3 cut(s) | 4713, 6861, 8517 |
| Sfr303I | CCGCGG | 4 cut(s) | 4755, 6903, 8559, 11934 |
| SfuI | TTCGAA | 6 cut(s) | 2377, 9354, 10958, 12333, 12866, 16496 |
| SgrAI | CRCCGGYG | 2 cut(s) | 10909, 16069 |
| SgrBI | CCGCGG | 4 cut(s) | 4755, 6903, 8559, 11934 |
| SinI | GGWCC | 3 cut(s) | 3322, 12067, 13765 |
| SlaI | CTCGAG | 3 cut(s) | 4713, 6861, 8517 |
| SmaI | CCCGGG | 2 cut(s) | 1004, 13459 |
| SpeI | ACTAGT | 3 cut(s) | 581, 854, 12884 |
| SphI | GCATGC | 7 cut(s) | 4937, 7085, 8741, 12249, 12752, 14327, 16382 |
| Sse8387I | CCTGCAGG | 2 cut(s) | 3882, 6123 |
| SstI | GAGCTC | 8 cut(s) | 13122, 13308, 13467, 14697, 14883, 15045, 16938, 17100 |
| TaqII | GACCGA | 2 cut(s) | 463, 17639 |
| TauI | GCSGC | 4 cut(s) | 7355, 11834, 11933, 15887 |
| TspMI | CCCGGG | 2 cut(s) | 1002, 13457 |
| Tth111I | GACNNNGTC | 3 cut(s) | 2237, 4154, 18319 |
| Vha464I | CTTAAG | 1 cut(s) | 13190 |
| VneI | GTGCAC | 1 cut(s) | 13839 |
| VpaK11BI | GGWCC | 3 cut(s) | 3322, 12067, 13765 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1583 |
| XbaI | TCTAGA | 5 cut(s) | 4909, 7057, 8713, 10078, 15910 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 15667 |
| XhoI | CTCGAG | 3 cut(s) | 4713, 6861, 8517 |
| XmaI | CCCGGG | 2 cut(s) | 1002, 13457 |
| XmiI | GTMKAC | 2 cut(s) | 851, 17963 |
| ZraI | GACGTC | 1 cut(s) | 5551 |
| ZrmI | AGTACT | 6 cut(s) | 2299, 3919, 4219, 6160, 6352, 8005 |