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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1961 |
| Acc36I | ACCTGC | 2 cut(s) | 1007, 1961 |
| AccB1I | GGYRCC | 2 cut(s) | 862, 5518 |
| AccI | GTMKAC | 3 cut(s) | 1452, 2813, 2880 |
| AccII | CGCG | 3 cut(s) | 1667, 2088, 2366 |
| AccIII | TCCGGA | 1 cut(s) | 4483 |
| AciI | CCGC | 4 cut(s) | 947, 2426, 3704, 6083 |
| AclI | AACGTT | 1 cut(s) | 5136 |
| AclWI | GGATC | 5 cut(s) | 1690, 1861, 3617, 5144, 5157 |
| AcsI | RAATTY | 7 cut(s) | 2228, 2530, 2549, 3263, 3345, 5086, 5929 |
| AcyI | GRCGYC | 1 cut(s) | 2499 |
| AdeI | CACNNNGTG | 5 cut(s) | 2612, 3140, 3659, 5501, 5518 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1577, 3174, 5872, 6065 |
| AflIII | ACRYGT | 3 cut(s) | 512, 674, 795 |
| AhlI | ACTAGT | 1 cut(s) | 2057 |
| AjiI | CACGTC | 2 cut(s) | 798, 943 |
| AjnI | CCWGG | 6 cut(s) | 807, 2046, 4921, 5123, 5751, 5859 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 751, 783, 6048, 6080 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4059, 4091 |
| Alw21I | GWGCWC | 9 cut(s) | 671, 1181, 2364, 2466, 3390, 3452, 3552, 4500, 4644 |
| Alw44I | GTGCAC | 1 cut(s) | 3448 |
| AlwI | GGATC | 5 cut(s) | 1690, 1861, 3617, 5144, 5157 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 839, 4922 |
| Ama87I | CYCGRG | 1 cut(s) | 3374 |
| Aor13HI | TCCGGA | 1 cut(s) | 4483 |
| AoxI | GGCC | 2 cut(s) | 1251, 3506 |
| ApaLI | GTGCAC | 1 cut(s) | 3448 |
| ApoI | RAATTY | 7 cut(s) | 2228, 2530, 2549, 3263, 3345, 5086, 5929 |
| AseI | ATTAAT | 1 cut(s) | 4170 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1908, 2220, 2646, 3255, 3801, 4362 |
| AspS9I | GGNCC | 2 cut(s) | 5596, 5863 |
| AsuC2I | CCSGG | 3 cut(s) | 1069, 2503, 2777 |
| AsuII | TTCGAA | 3 cut(s) | 770, 3839, 4991 |
| AvaI | CYCGRG | 1 cut(s) | 3374 |
| AvaII | GGWCC | 2 cut(s) | 5596, 5863 |
| AxyI | CCTNAGG | 1 cut(s) | 4806 |
| BaeGI | GKGCMC | 1 cut(s) | 3452 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 189, 222, 3660, 3693, 6204, 6237 |
| BamHI | GGATCC | 1 cut(s) | 5149 |
| BanI | GGYRCC | 2 cut(s) | 862, 5518 |
| BanII | GRGCYC | 7 cut(s) | 1181, 2457, 2466, 3726, 4500, 4644, 5124 |
| BauI | CACGAG | 3 cut(s) | 421, 3923, 5513 |
| BbsI | GAAGAC | 7 cut(s) | 711, 792, 1935, 2400, 2940, 3048, 6306 |
| Bbv12I | GWGCWC | 9 cut(s) | 671, 1181, 2364, 2466, 3390, 3452, 3552, 4500, 4644 |
| BbvCI | CCTCAGC | 1 cut(s) | 5616 |
| BccI | CCATC | 9 cut(s) | 220, 569, 821, 874, 2687, 3364, 3883, 4255, 6250 |
| BceAI | ACGGC | 1 cut(s) | 5652 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 836, 870 |
| BciT130I | CCWGG | 6 cut(s) | 809, 2048, 4923, 5125, 5753, 5861 |
| BcnI | CCSGG | 3 cut(s) | 1069, 2503, 2777 |
| BcuI | ACTAGT | 1 cut(s) | 2057 |
| BfmI | CTRYAG | 2 cut(s) | 1479, 3417 |
| BfuAI | ACCTGC | 2 cut(s) | 1007, 1961 |
| BglII | AGATCT | 3 cut(s) | 698, 3596, 3742 |
| BlpI | GCTNAGC | 1 cut(s) | 2358 |
| Bme1390I | CCNGG | 9 cut(s) | 809, 1069, 2048, 2503, 2777, 4923, 5125, 5753, 5861 |
| Bme18I | GGWCC | 2 cut(s) | 5596, 5863 |
| BmeT110I | CYCGRG | 1 cut(s) | 3374 |
| BmgBI | CACGTC | 2 cut(s) | 798, 943 |
| BmgT120I | GGNCC | 2 cut(s) | 5596, 5863 |
| BmiI | GGNNCC | 9 cut(s) | 864, 2223, 2310, 2709, 3723, 4077, 5151, 5520, 5865 |
| BmrFI | CCNGG | 9 cut(s) | 809, 1069, 2048, 2503, 2777, 4923, 5125, 5753, 5861 |
| BmrI | ACTGGG | 1 cut(s) | 2039 |
| BmuI | ACTGGG | 1 cut(s) | 2039 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5601 |
| BpiI | GAAGAC | 7 cut(s) | 711, 792, 1935, 2400, 2940, 3048, 6306 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1163, 1195, 1313, 1345 |
| BpmI | CTGGAG | 4 cut(s) | 4331, 4647, 4944, 5843 |
| Bpu10I | CCTNAGC | 1 cut(s) | 5616 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2358 |
| Bpu14I | TTCGAA | 3 cut(s) | 770, 3839, 4991 |
| BpuMI | CCSGG | 3 cut(s) | 1069, 2503, 2777 |
| Bsa29I | ATCGAT | 1 cut(s) | 4389 |
| BsaAI | YACGTR | 1 cut(s) | 1604 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1566, 4977 |
| BsaHI | GRCGYC | 1 cut(s) | 2499 |
| BsaI | GGTCTC | 1 cut(s) | 2548 |
| BsaWI | WCCGGW | 1 cut(s) | 4483 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 596, 626, 1464, 1494 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1577, 3174, 5872, 6065 |
| Bse118I | RCCGGY | 1 cut(s) | 3029 |
| Bse1I | ACTGG | 6 cut(s) | 1788, 2034, 3291, 3509, 5542, 5711 |
| Bse21I | CCTNAGG | 1 cut(s) | 4806 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1566, 4977 |
| BseAI | TCCGGA | 1 cut(s) | 4483 |
| BseBI | CCWGG | 6 cut(s) | 809, 2048, 4923, 5125, 5753, 5861 |
| BseCI | ATCGAT | 1 cut(s) | 4389 |
| BseGI | GGATG | 9 cut(s) | 613, 832, 1048, 1234, 1567, 4000, 6007, 6243, 6261 |
| BseJI | GATNNNNATC | 2 cut(s) | 1566, 4977 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1577, 3174, 5872, 6065 |
| BseNI | ACTGG | 6 cut(s) | 1788, 2034, 3291, 3509, 5542, 5711 |
| BseRI | GAGGAG | 8 cut(s) | 290, 392, 935, 1132, 1187, 1763, 2415, 5081 |
| BseSI | GKGCMC | 1 cut(s) | 3452 |
| BsgI | GTGCAG | 6 cut(s) | 852, 876, 985, 1995, 2999, 4527 |
| Bsh1236I | CGCG | 3 cut(s) | 1667, 2088, 2366 |
| BshFI | GGCC | 2 cut(s) | 1253, 3508 |
| BshNI | GGYRCC | 2 cut(s) | 862, 5518 |
| BshVI | ATCGAT | 1 cut(s) | 4389 |
| BsiHKAI | GWGCWC | 9 cut(s) | 671, 1181, 2364, 2466, 3390, 3452, 3552, 4500, 4644 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3374 |
| BsiSI | CCGG | 5 cut(s) | 1068, 2502, 2777, 3030, 4484 |
| BslFI | GGGAC | 1 cut(s) | 523 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1577, 3174, 5872, 6065 |
| BsmBI | CGTCTC | 4 cut(s) | 933, 1728, 5093, 5627 |
| BsmFI | GGGAC | 1 cut(s) | 523 |
| BsmI | GAATGC | 4 cut(s) | 374, 3527, 5106, 6274 |
| BsnI | GGCC | 2 cut(s) | 1253, 3508 |
| Bso31I | GGTCTC | 1 cut(s) | 2548 |
| BsoBI | CYCGRG | 1 cut(s) | 3374 |
| Bsp119I | TTCGAA | 3 cut(s) | 770, 3839, 4991 |
| Bsp13I | TCCGGA | 1 cut(s) | 4483 |
| Bsp1407I | TGTACA | 1 cut(s) | 515 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2358 |
| Bsp19I | CCATGG | 1 cut(s) | 5592 |
| Bsp68I | TCGCGA | 2 cut(s) | 1667, 2088 |
| BspACI | CCGC | 4 cut(s) | 947, 2426, 3704, 6083 |
| BspANI | GGCC | 2 cut(s) | 1253, 3508 |
| BspDI | ATCGAT | 1 cut(s) | 4389 |
| BspEI | TCCGGA | 1 cut(s) | 4483 |
| BspFNI | CGCG | 3 cut(s) | 1667, 2088, 2366 |
| BspHI | TCATGA | 1 cut(s) | 3709 |
| BspLI | GGNNCC | 9 cut(s) | 864, 2223, 2310, 2709, 3723, 4077, 5151, 5520, 5865 |
| BspMI | ACCTGC | 2 cut(s) | 1007, 1961 |
| BspPI | GGATC | 5 cut(s) | 1690, 1861, 3617, 5144, 5157 |
| BspQI | GCTCTTC | 9 cut(s) | 618, 2445, 2982, 3531, 3978, 4050, 4623, 5112, 6096 |
| BspT104I | TTCGAA | 3 cut(s) | 770, 3839, 4991 |
| BspT107I | GGYRCC | 2 cut(s) | 862, 5518 |
| BspTNI | GGTCTC | 1 cut(s) | 2548 |
| BsrFI | RCCGGY | 1 cut(s) | 3029 |
| BsrGI | TGTACA | 1 cut(s) | 515 |
| BsrI | ACTGG | 6 cut(s) | 1788, 2034, 3291, 3509, 5542, 5711 |
| BssAI | RCCGGY | 1 cut(s) | 3029 |
| BssNI | GRCGYC | 1 cut(s) | 2499 |
| BssSI | CACGAG | 3 cut(s) | 421, 3923, 5513 |
| BssT1I | CCWWGG | 7 cut(s) | 1026, 2829, 3726, 4266, 5592, 5743, 5901 |
| Bst2BI | CACGAG | 3 cut(s) | 421, 3923, 5513 |
| Bst2UI | CCWGG | 6 cut(s) | 809, 2048, 4923, 5125, 5753, 5861 |
| BstACI | GRCGYC | 1 cut(s) | 2499 |
| BstAUI | TGTACA | 1 cut(s) | 515 |
| BstBAI | YACGTR | 1 cut(s) | 1604 |
| BstBI | TTCGAA | 3 cut(s) | 770, 3839, 4991 |
| BstC8I | GCNNGC | 9 cut(s) | 2043, 2364, 2925, 2978, 3489, 3527, 4046, 4597, 5435 |
| BstDSI | CCRYGG | 1 cut(s) | 5592 |
| BstF5I | GGATG | 9 cut(s) | 613, 832, 1048, 1234, 1567, 4000, 6007, 6243, 6261 |
| BstFNI | CGCG | 3 cut(s) | 1667, 2088, 2366 |
| BstNI | CCWGG | 6 cut(s) | 809, 2048, 4923, 5125, 5753, 5861 |
| BstNSI | RCATGY | 6 cut(s) | 516, 678, 1080, 2976, 4044, 4234 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5601 |
| BstSCI | CCNGG | 9 cut(s) | 807, 1067, 2046, 2501, 2775, 4921, 5123, 5751, 5859 |
| BstSFI | CTRYAG | 2 cut(s) | 1479, 3417 |
| BstSLI | GKGCMC | 1 cut(s) | 3452 |
| BstUI | CGCG | 3 cut(s) | 1667, 2088, 2366 |
| BstV2I | GAAGAC | 7 cut(s) | 711, 792, 1935, 2400, 2940, 3048, 6306 |
| BstX2I | RGATCY | 6 cut(s) | 698, 1866, 3596, 3622, 3742, 5149 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2567 |
| BstYI | RGATCY | 6 cut(s) | 698, 1866, 3596, 3622, 3742, 5149 |
| Bsu15I | ATCGAT | 1 cut(s) | 4389 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4806 |
| BsuRI | GGCC | 2 cut(s) | 1253, 3508 |
| BsuTUI | ATCGAT | 1 cut(s) | 4389 |
| BtgI | CCRYGG | 1 cut(s) | 5592 |
| BtrI | CACGTC | 2 cut(s) | 798, 943 |
| BtsCI | GGATG | 9 cut(s) | 613, 832, 1048, 1234, 1567, 4000, 6007, 6243, 6261 |
| BtsI | GCAGTG | 3 cut(s) | 316, 2271, 3639 |
| BtuMI | TCGCGA | 2 cut(s) | 1667, 2088 |
| BveI | ACCTGC | 2 cut(s) | 1007, 1961 |
| Cac8I | GCNNGC | 9 cut(s) | 2043, 2364, 2925, 2978, 3489, 3527, 4046, 4597, 5435 |
| CaiI | CAGNNNCTG | 2 cut(s) | 839, 4922 |
| CciI | TCATGA | 1 cut(s) | 3709 |
| Cfr10I | RCCGGY | 1 cut(s) | 3029 |
| Cfr13I | GGNCC | 2 cut(s) | 5596, 5863 |
| ClaI | ATCGAT | 1 cut(s) | 4389 |
| CseI | GACGC | 2 cut(s) | 2507, 2779 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1902, 1937 |
| DraIII | CACNNNGTG | 5 cut(s) | 2612, 3140, 3659, 5501, 5518 |
| Ecl136II | GAGCTC | 4 cut(s) | 1179, 2464, 4498, 4642 |
| Eco130I | CCWWGG | 7 cut(s) | 1026, 2829, 3726, 4266, 5592, 5743, 5901 |
| Eco24I | GRGCYC | 7 cut(s) | 1181, 2457, 2466, 3726, 4500, 4644, 5124 |
| Eco31I | GGTCTC | 1 cut(s) | 2548 |
| Eco32I | GATATC | 1 cut(s) | 2755 |
| Eco47I | GGWCC | 2 cut(s) | 5596, 5863 |
| Eco53kI | GAGCTC | 4 cut(s) | 1179, 2464, 4498, 4642 |
| Eco81I | CCTNAGG | 1 cut(s) | 4806 |
| Eco88I | CYCGRG | 1 cut(s) | 3374 |
| EcoICRI | GAGCTC | 4 cut(s) | 1179, 2464, 4498, 4642 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5863 |
| EcoRII | CCWGG | 6 cut(s) | 807, 2046, 4921, 5123, 5751, 5859 |
| EcoRV | GATATC | 1 cut(s) | 2755 |
| EcoT14I | CCWWGG | 7 cut(s) | 1026, 2829, 3726, 4266, 5592, 5743, 5901 |
| EcoT22I | ATGCAT | 2 cut(s) | 374, 1288 |
| EcoT38I | GRGCYC | 7 cut(s) | 1181, 2457, 2466, 3726, 4500, 4644, 5124 |
| ErhI | CCWWGG | 7 cut(s) | 1026, 2829, 3726, 4266, 5592, 5743, 5901 |
| Esp3I | CGTCTC | 4 cut(s) | 933, 1728, 5093, 5627 |
| FaqI | GGGAC | 1 cut(s) | 523 |
| FblI | GTMKAC | 3 cut(s) | 1452, 2813, 2880 |
| FokI | GGATG | 9 cut(s) | 620, 839, 1055, 1241, 1554, 4007, 6014, 6230, 6268 |
| FriOI | GRGCYC | 7 cut(s) | 1181, 2457, 2466, 3726, 4500, 4644, 5124 |
| GsuI | CTGGAG | 4 cut(s) | 4331, 4647, 4944, 5843 |
| HaeIII | GGCC | 2 cut(s) | 1253, 3508 |
| HapII | CCGG | 5 cut(s) | 1068, 2502, 2777, 3030, 4484 |
| HgaI | GACGC | 2 cut(s) | 2507, 2779 |
| Hin1I | GRCGYC | 1 cut(s) | 2499 |
| HincII | GTYRAC | 1 cut(s) | 4224 |
| HindII | GTYRAC | 1 cut(s) | 4224 |
| HindIII | AAGCTT | 9 cut(s) | 13, 359, 765, 1198, 2346, 2847, 3999, 4131, 5244 |
| HpaI | GTTAAC | 1 cut(s) | 4224 |
| HpaII | CCGG | 5 cut(s) | 1068, 2502, 2777, 3030, 4484 |
| Hpy166II | GTNNAC | 9 cut(s) | 1453, 2814, 2881, 3223, 3450, 4067, 4224, 4949, 5419 |
| Hpy8I | GTNNAC | 9 cut(s) | 1453, 2814, 2881, 3223, 3450, 4067, 4224, 4949, 5419 |
| HpyCH4IV | ACGT | 5 cut(s) | 797, 942, 1603, 3675, 5136 |
| HpySE526I | ACGT | 5 cut(s) | 797, 942, 1603, 3675, 5136 |
| Hsp92I | GRCGYC | 1 cut(s) | 2499 |
| Kpn2I | TCCGGA | 1 cut(s) | 4483 |
| KspAI | GTTAAC | 1 cut(s) | 4224 |
| LguI | GCTCTTC | 9 cut(s) | 618, 2445, 2982, 3531, 3978, 4050, 4623, 5112, 6096 |
| MaeII | ACGT | 5 cut(s) | 797, 942, 1603, 3675, 5136 |
| MfeI | CAATTG | 6 cut(s) | 210, 441, 1989, 3681, 5112, 5316 |
| MflI | RGATCY | 6 cut(s) | 698, 1866, 3596, 3622, 3742, 5149 |
| MlyI | GAGTC | 8 cut(s) | 398, 1343, 1862, 4062, 4547, 5717, 5873, 5988 |
| MmeI | TCCRAC | 2 cut(s) | 782, 1450 |
| Mph1103I | ATGCAT | 2 cut(s) | 374, 1288 |
| MroI | TCCGGA | 1 cut(s) | 4483 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1908, 2220, 2646, 3255, 3801, 4362 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2862, 3927, 6111 |
| MspA1I | CMGCKG | 7 cut(s) | 386, 1091, 2426, 2927, 4334, 4565, 5957 |
| MspI | CCGG | 5 cut(s) | 1068, 2502, 2777, 3030, 4484 |
| MspR9I | CCNGG | 9 cut(s) | 809, 1069, 2048, 2503, 2777, 4923, 5125, 5753, 5861 |
| MunI | CAATTG | 6 cut(s) | 210, 441, 1989, 3681, 5112, 5316 |
| Mva1269I | GAATGC | 4 cut(s) | 374, 3527, 5106, 6274 |
| MvaI | CCWGG | 6 cut(s) | 809, 2048, 4923, 5125, 5753, 5861 |
| MvnI | CGCG | 3 cut(s) | 1667, 2088, 2366 |
| NciI | CCSGG | 3 cut(s) | 1069, 2503, 2777 |
| NcoI | CCATGG | 1 cut(s) | 5592 |
| NlaIV | GGNNCC | 9 cut(s) | 864, 2223, 2310, 2709, 3723, 4077, 5151, 5520, 5865 |
| NmuCI | GTSAC | 8 cut(s) | 418, 1055, 1580, 2269, 3070, 4558, 4693, 5701 |
| NruI | TCGCGA | 2 cut(s) | 1667, 2088 |
| NsiI | ATGCAT | 2 cut(s) | 374, 1288 |
| NspI | RCATGY | 6 cut(s) | 516, 678, 1080, 2976, 4044, 4234 |
| NspV | TTCGAA | 3 cut(s) | 770, 3839, 4991 |
| PagI | TCATGA | 1 cut(s) | 3709 |
| PaqCI | CACCTGC | 1 cut(s) | 1961 |
| PasI | CCCWGGG | 1 cut(s) | 5124 |
| PciI | ACATGT | 2 cut(s) | 512, 674 |
| PciSI | GCTCTTC | 9 cut(s) | 618, 2445, 2982, 3531, 3978, 4050, 4623, 5112, 6096 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1716 |
| PctI | GAATGC | 4 cut(s) | 374, 3527, 5106, 6274 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1908, 2220, 2646, 3255, 3801, 4362 |
| PfoI | TCCNGGA | 3 cut(s) | 807, 2775, 5859 |
| PleI | GAGTC | 8 cut(s) | 397, 1343, 1861, 4062, 4546, 5717, 5873, 5988 |
| PpsI | GAGTC | 8 cut(s) | 397, 1343, 1861, 4062, 4546, 5717, 5873, 5988 |
| Ppu21I | YACGTR | 1 cut(s) | 1604 |
| PpuMI | RGGWCCY | 1 cut(s) | 5863 |
| PscI | ACATGT | 2 cut(s) | 512, 674 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5601 |
| PshBI | ATTAAT | 1 cut(s) | 4170 |
| Psp124BI | GAGCTC | 4 cut(s) | 1181, 2466, 4500, 4644 |
| Psp1406I | AACGTT | 1 cut(s) | 5136 |
| Psp5II | RGGWCCY | 1 cut(s) | 5863 |
| Psp6I | CCWGG | 6 cut(s) | 807, 2046, 4921, 5123, 5751, 5859 |
| PspGI | CCWGG | 6 cut(s) | 807, 2046, 4921, 5123, 5751, 5859 |
| PspN4I | GGNNCC | 9 cut(s) | 864, 2223, 2310, 2709, 3723, 4077, 5151, 5520, 5865 |
| PspPI | GGNCC | 2 cut(s) | 5596, 5863 |
| PspPPI | RGGWCCY | 1 cut(s) | 5863 |
| PstNI | CAGNNNCTG | 2 cut(s) | 839, 4922 |
| PsuI | RGATCY | 6 cut(s) | 698, 1866, 3596, 3622, 3742, 5149 |
| PvuII | CAGCTG | 6 cut(s) | 386, 1091, 2927, 4334, 4565, 5957 |
| RruI | TCGCGA | 2 cut(s) | 1667, 2088 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2862, 3927, 6111 |
| SacI | GAGCTC | 4 cut(s) | 1181, 2466, 4500, 4644 |
| SapI | GCTCTTC | 9 cut(s) | 618, 2445, 2982, 3531, 3978, 4050, 4623, 5112, 6096 |
| Sau96I | GGNCC | 2 cut(s) | 5596, 5863 |
| SchI | GAGTC | 8 cut(s) | 398, 1343, 1862, 4062, 4547, 5717, 5873, 5988 |
| ScrFI | CCNGG | 9 cut(s) | 809, 1069, 2048, 2503, 2777, 4923, 5125, 5753, 5861 |
| SfcI | CTRYAG | 2 cut(s) | 1479, 3417 |
| SfuI | TTCGAA | 3 cut(s) | 770, 3839, 4991 |
| SinI | GGWCC | 2 cut(s) | 5596, 5863 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2862, 3927, 6111 |
| SpeI | ACTAGT | 1 cut(s) | 2057 |
| SsiI | CCGC | 4 cut(s) | 947, 2426, 3704, 6083 |
| SspI | AATATT | 1 cut(s) | 933 |
| SstI | GAGCTC | 4 cut(s) | 1181, 2466, 4500, 4644 |
| StyD4I | CCNGG | 9 cut(s) | 807, 1067, 2046, 2501, 2775, 4921, 5123, 5751, 5859 |
| StyI | CCWWGG | 7 cut(s) | 1026, 2829, 3726, 4266, 5592, 5743, 5901 |
| TaiI | ACGT | 5 cut(s) | 800, 945, 1606, 3678, 5139 |
| TatI | WGTACW | 7 cut(s) | 515, 561, 1100, 1498, 1949, 3434, 5191 |
| TauI | GCSGC | 1 cut(s) | 949 |
| TseFI | GTSAC | 8 cut(s) | 418, 1055, 1580, 2269, 3070, 4558, 4693, 5701 |
| Tsp45I | GTSAC | 8 cut(s) | 418, 1055, 1580, 2269, 3070, 4558, 4693, 5701 |
| TspGWI | ACGGA | 2 cut(s) | 1849, 4007 |
| VneI | GTGCAC | 1 cut(s) | 3448 |
| VpaK11BI | GGWCC | 2 cut(s) | 5596, 5863 |
| VspI | ATTAAT | 1 cut(s) | 4170 |
| XapI | RAATTY | 7 cut(s) | 2228, 2530, 2549, 3263, 3345, 5086, 5929 |
| XbaI | TCTAGA | 4 cut(s) | 2164, 3593, 3745, 6206 |
| XceI | RCATGY | 6 cut(s) | 516, 678, 1080, 2976, 4044, 4234 |
| XmiI | GTMKAC | 3 cut(s) | 1452, 2813, 2880 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1908, 2220, 2646, 3255, 3801, 4362 |
| Zsp2I | ATGCAT | 2 cut(s) | 374, 1288 |