Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001371

Physical Location & Seq

Genomic Coordinates Forward (+)

77130007 .. 77131630

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021670

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCGCGAGTTCTGCACCAGAATCACTCGAAGAAGATACAGTTAAGAGCTCTCAAGACAATGAGAGAGACAATAGAGTTGAAGGAAGAGGGCAGCTGTACAGAGAATGAAAAACATGAATATTCTAGTGACCTCACGCGGGAGTATATTCCAAAAGATACACCTAATCAGATCAAAGATGCAGTCAAGTCCGAAAATGAGATTCTTGAAGATTCACAGACTATTGAGGTAGATGAGAGAACCACATGTGAGACAAAGAATGCTGAAAGATCTGAAGAACTTCCTAGTACATTACCTGCAGTGAAATATAATGAAGTTCAGCAGGGAGAGGGGAGCCGTACAAAGAGCACAAAAGAGGAAAATGCTAGTGACCTCATACCAGAATATGTTCCAGAAGATGCTACTGAGCGGATCGAAGATGAAGACTGTAATGCAGTCAAGTCCAAAAAAGAGATTCTTGAAGATTCATGGACTGTTGAGGTAGATAAGACAACCACATTCAATATTACAGAAATGAGTGCAGAAATACCATCAAATGGTGAAGAAGATTCACCAGAGGTGTTGCAGAAATATGAACCAGAAGAGAAGATTATGGAATTGCCACAAGTGAAACCTGAAGAAACGACACCAGAATCGTCAATTAAAAATGCAGAAGTTATTACCTGCACAAAAAAGGAAATACAAGAATCACTAGACAAAGAAAAGGATACAAAACAAAGTGACACTTCATTGGGGGAGGTTTTGGAGACTACAATTACAGAAGCACTACCGGATGTTCATACTGTTGAGGACACTGCAGAAAGGGCCACAGAATATCAGGTCTACTCTGAACAAGAAGTCCTTTCCCTTTCATTCTATACTTACAGAAAGACTATCCGTAGAAATATTGCAAATAGTACCTGTTTAGCCACGAGGCAAAGTGTTAGTGGCTTATTCGGTTACAGAAAAACTATCCGTCGAAATATTGCTCATATTTTGGCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.5

Weight (kDa)

4.73

Isoelectric Point (pI)

64.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40450 AT5G40450
fragaria_vesca	FvH4_6g51240 FvH4_6g51240 FvH4_6g51240
malus_domestica	MD09G1027400.v1.1 MD17G1027400.v1.1
prunus_persica	Prupe.3G291300_v2.0.a1 Prupe.3G291300_v2.0.a1
pyrus_communis	pycom111g02140 pycom17g02230 pycom17g02240 pycom17g02250
rosa_chinensis	RchiOBHm_Chr2g0172841 RchiOBHm_Chr2g0172861 RchiOBHm_Chr5g0078711 RchiOBHm_Chr7g0216841
rosa_laevigata	RLG00000021670 RLG00000022134 RLG00000028205
rosa_multiflora	Rmu_co8257395.1_g000001 Rmu_sc0002979.1_g000007 Rmu_sc0024990.1_g000001 Rmu_sc0036573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079480 Rroxscaffold_5G00333390 Rroxscaffold_7G00202120
rosa_rugosa	Rorug02G0562000 Rorug02G0562100 Rorug02G0562200 Rorug02G0562300 Rorug02G0562400 Rorug02G0562500 Rorug02G0562600 Rorug02G0562700 Rorug02G0562800 Rorug02G0562900 Rorug02G0562900 Rorug03G0301200 Rorug05G0513600
rosa_samantha	Rh1CG021300 Rh2AG639700 Rh2BG653100 Rh2CG618900 Rh2DG666800 Rh4AG006000 Rh4DG005000 Rh4DG005300 Rh4DG126700 Rh6CG196000
rosa_wichuraiana	Rw2G052810 Rw5G035440 Rw6G002440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	304, 671
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccBSI	CCGCTC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	822
AccII	CGCG	2 cut(s)	7, 139
AciI	CCGC	2 cut(s)	139, 409
AclWI	GGATC	1 cut(s)	419
AcuI	CTGAAG	2 cut(s)	294, 636
AfaI	GTAC	4 cut(s)	100, 289, 340, 898
AfiI	CCNNNNNNNGG	2 cut(s)	139, 536
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	82, 209, 461, 502
AloI	GAACNNNNNNTCC	2 cut(s)	822, 854
AluBI	AGCT	2 cut(s)	50, 96
AluI	AGCT	2 cut(s)	50, 96
Alw21I	GWGCWC	2 cut(s)	52, 350
Alw26I	GTCTC	3 cut(s)	62, 245, 740
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	1 cut(s)	804
ApeKI	GCWGC	1 cut(s)	93
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
Asp700I	GAANNNNTTC	2 cut(s)	279, 387
AspS9I	GGNCC	1 cut(s)	804
AsuHPI	GGTGA	2 cut(s)	543, 551
BanII	GRGCYC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	910
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	52, 350
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	700
BcoDI	GTCTC	3 cut(s)	62, 245, 740
BfaI	CTAG	5 cut(s)	126, 285, 366, 692, 985
BfmI	CTRYAG	2 cut(s)	297, 795
BfuAI	ACCTGC	2 cut(s)	304, 671
BfuI	GTATCC	1 cut(s)	700
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	804
BmiI	GGNNCC	1 cut(s)	335
BmsI	GCATC	2 cut(s)	169, 388
BpiI	GAAGAC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	769
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 536
BseGI	GGATG	1 cut(s)	778
BseLI	CCNNNNNNNGG	2 cut(s)	139, 536
BseMII	CTCAG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	105
BsgI	GTGCAG	2 cut(s)	540, 649
Bsh1236I	CGCG	2 cut(s)	7, 139
BshFI	GGCC	1 cut(s)	806
BsiHKAI	GWGCWC	2 cut(s)	52, 350
BsiSI	CCGG	1 cut(s)	770
BslI	CCNNNNNNNGG	2 cut(s)	139, 536
BsmAI	GTCTC	3 cut(s)	62, 245, 740
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	806
Bsp1286I	GDGCHC	2 cut(s)	52, 350
Bsp1407I	TGTACA	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	171, 269, 411
Bsp68I	TCGCGA	1 cut(s)	7
BspACI	CCGC	2 cut(s)	139, 409
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	7, 139
BspLI	GGNNCC	1 cut(s)	335
BspMAI	CTGCAG	2 cut(s)	301, 799
BspMI	ACCTGC	2 cut(s)	304, 671
BspPI	GGATC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	409
BsrGI	TGTACA	1 cut(s)	98
BssMI	GATC	3 cut(s)	171, 269, 411
BssSI	CACGAG	1 cut(s)	910
Bst2BI	CACGAG	1 cut(s)	910
Bst4CI	ACNGT	4 cut(s)	42, 428, 475, 784
Bst6I	CTCTTC	2 cut(s)	81, 576
BstAUI	TGTACA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	982
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	778
BstFNI	CGCG	2 cut(s)	7, 139
BstKTI	GATC	3 cut(s)	174, 272, 414
BstMAI	GTCTC	3 cut(s)	62, 245, 740
BstMBI	GATC	3 cut(s)	171, 269, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 803
BstNSI	RCATGY	1 cut(s)	249
BstSFI	CTRYAG	2 cut(s)	297, 795
BstUI	CGCG	2 cut(s)	7, 139
BstV1I	GCAGC	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	806
BtsCI	GGATG	1 cut(s)	778
BtsI	GCAGTG	2 cut(s)	306, 792
BtsIMutI	CAGTG	2 cut(s)	306, 792
BtuMI	TCGCGA	1 cut(s)	7
BveI	ACCTGC	2 cut(s)	304, 671
Cac8I	GCNNGC	1 cut(s)	982
Cfr13I	GGNCC	1 cut(s)	804
Csp6I	GTAC	4 cut(s)	99, 288, 339, 897
CviAII	CATG	3 cut(s)	116, 246, 468
CviJI	RGCY	7 cut(s)	50, 96, 336, 806, 908, 930, 980
CviKI_1	RGCY	7 cut(s)	50, 96, 336, 806, 908, 930, 980
CviQI	GTAC	4 cut(s)	99, 288, 339, 897
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	3 cut(s)	173, 271, 413
DpnII	GATC	3 cut(s)	171, 269, 411
Eam1104I	CTCTTC	2 cut(s)	81, 576
EarI	CTCTTC	2 cut(s)	81, 576
Ecl136II	GAGCTC	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	294, 636
EcoICRI	GAGCTC	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	3 cut(s)	119, 249, 471
FalI	AAGNNNNNCTT	6 cut(s)	441, 473, 709, 741, 825, 857
FatI	CATG	3 cut(s)	115, 245, 467
FauI	CCCGC	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	785
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	5 cut(s)	126, 285, 366, 692, 985
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	806
HapII	CCGG	1 cut(s)	770
Hin1II	CATG	3 cut(s)	119, 249, 471
HinfI	GANTC	8 cut(s)	22, 202, 212, 454, 464, 548, 632, 686
HpaII	CCGG	1 cut(s)	770
HphI	GGTGA	2 cut(s)	543, 551
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	4 cut(s)	171, 193, 274, 829
Hpy188III	TCNNGA	5 cut(s)	6, 55, 206, 392, 458
Hpy8I	GTNNAC	1 cut(s)	823
Hpy99I	CGWCG	1 cut(s)	960
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	4 cut(s)	42, 428, 475, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 803
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	119, 249, 471
Kzo9I	GATC	3 cut(s)	171, 269, 411
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	2 cut(s)	169, 388
MaeI	CTAG	5 cut(s)	126, 285, 366, 692, 985
MaeIII	GTNAC	4 cut(s)	128, 368, 719, 938
MalI	GATC	3 cut(s)	173, 271, 413
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	3 cut(s)	171, 269, 411
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	2 cut(s)	52, 350
MluCI	AATT	3 cut(s)	596, 639, 753
MroXI	GAANNNNTTC	2 cut(s)	279, 387
MseI	TTAA	2 cut(s)	44, 642
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	770
Mva1269I	GAATGC	1 cut(s)	265
MvnI	CGCG	2 cut(s)	7, 139
MwoI	GCNNNNNNNGC	2 cut(s)	13, 803
NdeII	GATC	3 cut(s)	171, 269, 411
NlaIII	CATG	3 cut(s)	119, 249, 471
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	3 cut(s)	128, 368, 719
NruI	TCGCGA	1 cut(s)	7
NspI	RCATGY	1 cut(s)	249
PciI	ACATGT	1 cut(s)	245
PctI	GAATGC	1 cut(s)	265
PdmI	GAANNNNTTC	2 cut(s)	279, 387
PfeI	GAWTC	8 cut(s)	22, 202, 212, 454, 464, 548, 632, 686
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	95
PscI	ACATGT	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	1 cut(s)	804
PstI	CTGCAG	2 cut(s)	301, 799
PsuI	RGATCY	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	96
RruI	TCGCGA	1 cut(s)	7
RsaI	GTAC	4 cut(s)	100, 289, 340, 898
RsaNI	GTAC	4 cut(s)	99, 288, 339, 897
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	44, 642
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	3 cut(s)	171, 269, 411
Sau96I	GGNCC	1 cut(s)	804
SduI	GDGCHC	2 cut(s)	52, 350
SfaNI	GCATC	2 cut(s)	169, 388
SfcI	CTRYAG	2 cut(s)	297, 795
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	596, 639, 753
SsiI	CCGC	2 cut(s)	139, 409
SspI	AATATT	4 cut(s)	122, 505, 886, 964
SspMI	CTAG	5 cut(s)	126, 285, 366, 692, 985
SstI	GAGCTC	1 cut(s)	52
TaaI	ACNGT	4 cut(s)	42, 428, 475, 784
TaqI	TCGA	3 cut(s)	29, 414, 958
TasI	AATT	3 cut(s)	596, 639, 753
TatI	WGTACW	2 cut(s)	98, 287
TfiI	GAWTC	8 cut(s)	22, 202, 212, 454, 464, 548, 632, 686
Tru1I	TTAA	2 cut(s)	44, 642
Tru9I	TTAA	2 cut(s)	44, 642
TscAI	CASTG	2 cut(s)	306, 799
TseFI	GTSAC	3 cut(s)	128, 368, 719
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	3 cut(s)	128, 368, 719
TspDTI	ATGAA	9 cut(s)	123, 132, 327, 435, 456, 588, 717, 767, 840
TspGWI	ACGGA	2 cut(s)	866, 944
TspRI	CASTG	2 cut(s)	306, 799
Van91I	CCANNNNNTGG	1 cut(s)	536
XceI	RCATGY	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	822
XmnI	GAANNNNTTC	2 cut(s)	279, 387
XspI	CTAG	5 cut(s)	126, 285, 366, 692, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.