Rh4AG006000
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001371
Physical Location & Seq
Forward (+)
969499 .. 985485
15987 bp
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UTR
Exon/CDS
Intron
Rh4AG006000.1

Sequence Viewer

Length: 537 bp
ATGCTTGGAGACATAGATTGCTTCTACGTTCAAGGTTTCACATGCTACTGTTGTAAGAAATTGGTCTGCAAGCTTACTTCTGGAAGCATATGTCTCCAAACAAAATCATTGCAAAGTCTTAGGAGGCTTAAAGTACTTTCCATAGAGGCCTTGGCAAAGAAACAATCCACCAAAACTAGAGAGGCCGTTGAATTATTGTCAACAGGAAAGAGCTATATTGGTGCAGCTAATGAAAGACTAGACAATGTGTTCGGCAATCTCACCAATCAGCGAGGAATGGTTCTTCCTTTTGAACCGCTCTCAGCTACATCTGATAAAATCAGATATGCTGTTGATATGCCACATTTCCACAAATTGAGGAATCTTGATTTTAATCACGCCACGAGTGCAAACCAGAGTCACAAAAACATGCATGTGAAAGAAGTGTCGAAACAAAGTTTGTTAGAGCTGACATTTTTTCGTGCGGTCCGAGTCTTGGTCTCTCTGTATCCATTTGTCTCCTTCCTCATCAAAAGTGAAGTTGAAGGCATATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

178

Amino Acids

20.06

Weight (kDa)

9.3

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 2 cut(s) 296, 464
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 475
AgsI TTSAA 4 cut(s) 32, 191, 293, 524
AluBI AGCT 5 cut(s) 73, 213, 227, 305, 448
AluI AGCT 5 cut(s) 73, 213, 227, 305, 448
Alw26I GTCTC 4 cut(s) 3, 98, 484, 502
AoxI GGCC 2 cut(s) 147, 183
ApeKI GCWGC 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspS9I GGNCC 1 cut(s) 466
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 466
BauI CACGAG 1 cut(s) 382
BbvI GCAGC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 170
BciVI GTATCC 1 cut(s) 498
BcoDI GTCTC 4 cut(s) 3, 98, 484, 502
BfaI CTAG 2 cut(s) 177, 239
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 466
BsaBI GATNNNNATC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 150
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 2 cut(s) 149, 185
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 4 cut(s) 3, 98, 484, 502
BsnI GGCC 2 cut(s) 149, 185
Bso31I GGTCTC 1 cut(s) 484
BspACI CCGC 2 cut(s) 296, 464
BspANI GGCC 2 cut(s) 149, 185
BspCNI CTCAG 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 150
BssSI CACGAG 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 119, 301
BstMAI GTCTC 4 cut(s) 3, 98, 484, 502
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNSI RCATGY 3 cut(s) 45, 412, 416
BstV1I GCAGC 1 cut(s) 236
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 2 cut(s) 149, 185
Cac8I GCNNGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 466
CpoI CGGWCCG 1 cut(s) 466
Csp6I GTAC 1 cut(s) 134
CspI CGGWCCG 1 cut(s) 466
CviAII CATG 3 cut(s) 42, 409, 413
CviJI RGCY 8 cut(s) 73, 127, 149, 185, 213, 227, 305, 448
CviKI_1 RGCY 8 cut(s) 73, 127, 149, 185, 213, 227, 305, 448
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 2 cut(s) 119, 301
Eco130I CCWWGG 1 cut(s) 150
Eco147I AGGCCT 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 45, 412, 416
FatI CATG 3 cut(s) 41, 408, 412
FauNDI CATATG 2 cut(s) 89, 530
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 2 cut(s) 177, 239
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 2 cut(s) 149, 185
Hin1II CATG 3 cut(s) 45, 412, 416
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 3 cut(s) 361, 397, 471
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 3 cut(s) 313, 323, 470
Hpy188III TCNNGA 2 cut(s) 81, 365
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 511, 518
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 69, 112, 224, 389, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 2 cut(s) 119, 301
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 3 cut(s) 45, 412, 416
LpnPI CCDG 3 cut(s) 66, 189, 407
Lsp1109I GCAGC 1 cut(s) 236
MaeI CTAG 2 cut(s) 177, 239
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 398
MbiI CCGCTC 1 cut(s) 298
MboII GAAGA 1 cut(s) 275
MluCI AATT 3 cut(s) 59, 191, 353
MlyI GAGTC 2 cut(s) 406, 480
MnlI CCTC 6 cut(s) 117, 139, 175, 266, 351, 515
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 2 cut(s) 129, 372
MslI CAYNNNNRTG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeI CATATG 2 cut(s) 89, 530
NlaIII CATG 3 cut(s) 45, 412, 416
NmuCI GTSAC 1 cut(s) 398
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 3 cut(s) 45, 412, 416
PceI AGGCCT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 466
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 2 cut(s) 405, 479
PpsI GAGTC 2 cut(s) 405, 479
PspPI GGNCC 1 cut(s) 466
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 413
Rsr2I CGGWCCG 1 cut(s) 466
RsrII CGGWCCG 1 cut(s) 466
SaqAI TTAA 2 cut(s) 129, 372
SatI GCNGC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 466
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 2 cut(s) 406, 480
SetI ASST 7 cut(s) 30, 37, 75, 215, 229, 307, 450
SinI GGWCC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 3 cut(s) 59, 191, 353
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 2 cut(s) 296, 464
SspMI CTAG 2 cut(s) 177, 239
StuI AGGCCT 1 cut(s) 149
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 428
TasI AATT 3 cut(s) 59, 191, 353
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 129, 372
Tru9I TTAA 2 cut(s) 129, 372
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 466
XceI RCATGY 3 cut(s) 45, 412, 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XspI CTAG 2 cut(s) 177, 239
ZrmI AGTACT 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.