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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 89 |
| AatII | GACGTC | 1 cut(s) | 2520 |
| Acc36I | ACCTGC | 6 cut(s) | 278, 1217, 2740, 3859, 4261, 6409 |
| Acc65I | GGTACC | 1 cut(s) | 965 |
| AccB1I | GGYRCC | 2 cut(s) | 965, 3431 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 254 |
| AccBSI | CCGCTC | 1 cut(s) | 4431 |
| AccI | GTMKAC | 2 cut(s) | 93, 996 |
| AccII | CGCG | 4 cut(s) | 187, 849, 3173, 5944 |
| AccIII | TCCGGA | 3 cut(s) | 22, 1930, 2482 |
| AclI | AACGTT | 2 cut(s) | 5408, 6254 |
| AclWI | GGATC | 3 cut(s) | 147, 239, 2230 |
| AcoI | YGGCCR | 1 cut(s) | 5640 |
| AcvI | CACGTG | 2 cut(s) | 1363, 1661 |
| AcyI | GRCGYC | 2 cut(s) | 2517, 3432 |
| AdeI | CACNNNGTG | 1 cut(s) | 1082 |
| AfeI | AGCGCT | 1 cut(s) | 589 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 254, 979, 5108, 5750, 6218 |
| AflII | CTTAAG | 1 cut(s) | 4720 |
| AflIII | ACRYGT | 8 cut(s) | 400, 472, 1360, 1658, 3094, 3368, 4835, 5942 |
| AgeI | ACCGGT | 2 cut(s) | 154, 5743 |
| AhlI | ACTAGT | 1 cut(s) | 1037 |
| AjiI | CACGTC | 3 cut(s) | 1153, 2188, 4345 |
| AjnI | CCWGG | 3 cut(s) | 822, 1821, 4794 |
| Alw21I | GWGCWC | 1 cut(s) | 3105 |
| Alw44I | GTGCAC | 1 cut(s) | 3101 |
| AlwI | GGATC | 3 cut(s) | 147, 239, 2230 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 5018 |
| Ama87I | CYCGRG | 2 cut(s) | 1185, 4183 |
| Aor13HI | TCCGGA | 3 cut(s) | 22, 1930, 2482 |
| Aor51HI | AGCGCT | 1 cut(s) | 589 |
| ApaLI | GTGCAC | 1 cut(s) | 3101 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 6405, 6437 |
| AsiGI | ACCGGT | 2 cut(s) | 154, 5743 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 474, 3654, 6510 |
| Asp718I | GGTACC | 1 cut(s) | 965 |
| AspLEI | GCGC | 5 cut(s) | 187, 590, 782, 2749, 3434 |
| AspS9I | GGNCC | 7 cut(s) | 490, 557, 1708, 2480, 2821, 4105, 6283 |
| AsuC2I | CCSGG | 4 cut(s) | 1186, 1187, 4697, 5592 |
| AsuII | TTCGAA | 2 cut(s) | 4139, 4380 |
| AvaI | CYCGRG | 2 cut(s) | 1185, 4183 |
| AvaII | GGWCC | 6 cut(s) | 490, 557, 1708, 2480, 2821, 6283 |
| AxyI | CCTNAGG | 1 cut(s) | 1161 |
| BaeGI | GKGCMC | 2 cut(s) | 3105, 6053 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2172, 2205, 3942, 3975 |
| BanI | GGYRCC | 2 cut(s) | 965, 3431 |
| BanII | GRGCYC | 1 cut(s) | 1638 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5700, 5732 |
| BauI | CACGAG | 1 cut(s) | 2664 |
| BbrPI | CACGTG | 2 cut(s) | 1363, 1661 |
| BbsI | GAAGAC | 1 cut(s) | 5301 |
| Bbv12I | GWGCWC | 1 cut(s) | 3105 |
| BbvCI | CCTCAGC | 3 cut(s) | 591, 1641, 1773 |
| BceAI | ACGGC | 5 cut(s) | 198, 353, 1986, 3597, 5711 |
| BciT130I | CCWGG | 3 cut(s) | 824, 1823, 4796 |
| BciVI | GTATCC | 2 cut(s) | 877, 5266 |
| BclI | TGATCA | 1 cut(s) | 6439 |
| BcnI | CCSGG | 4 cut(s) | 1186, 1187, 4697, 5592 |
| BcuI | ACTAGT | 1 cut(s) | 1037 |
| BfmI | CTRYAG | 4 cut(s) | 3660, 3666, 6000, 6350 |
| BfoI | RGCGCY | 3 cut(s) | 591, 783, 3435 |
| BfrI | CTTAAG | 1 cut(s) | 4720 |
| BfuAI | ACCTGC | 6 cut(s) | 278, 1217, 2740, 3859, 4261, 6409 |
| BfuI | GTATCC | 2 cut(s) | 877, 5266 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 374, 5648 |
| BmcAI | AGTACT | 2 cut(s) | 5542, 5914 |
| Bme1390I | CCNGG | 7 cut(s) | 824, 1186, 1187, 1823, 4697, 4796, 5592 |
| Bme18I | GGWCC | 6 cut(s) | 490, 557, 1708, 2480, 2821, 6283 |
| BmeT110I | CYCGRG | 2 cut(s) | 1185, 4183 |
| BmgBI | CACGTC | 3 cut(s) | 1153, 2188, 4345 |
| BmgT120I | GGNCC | 7 cut(s) | 490, 557, 1708, 2480, 2821, 4105, 6283 |
| BmiI | GGNNCC | 7 cut(s) | 234, 558, 967, 2481, 3433, 6210, 6481 |
| BmrFI | CCNGG | 7 cut(s) | 824, 1186, 1187, 1823, 4697, 4796, 5592 |
| BpiI | GAAGAC | 1 cut(s) | 5301 |
| BpmI | CTGGAG | 5 cut(s) | 1374, 1844, 3108, 3483, 4817 |
| Bpu10I | CCTNAGC | 4 cut(s) | 591, 1554, 1641, 1773 |
| Bpu14I | TTCGAA | 2 cut(s) | 4139, 4380 |
| BpuEI | CTTGAG | 7 cut(s) | 1346, 1383, 1929, 3080, 3117, 5274, 5958 |
| BpuMI | CCSGG | 4 cut(s) | 1186, 1187, 4697, 5592 |
| Bsa29I | ATCGAT | 1 cut(s) | 2835 |
| BsaAI | YACGTR | 2 cut(s) | 1363, 1661 |
| BsaBI | GATNNNNATC | 1 cut(s) | 144 |
| BsaHI | GRCGYC | 2 cut(s) | 2517, 3432 |
| BsaI | GGTCTC | 2 cut(s) | 260, 5375 |
| BsaWI | WCCGGW | 6 cut(s) | 22, 154, 1930, 2482, 5377, 5743 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 254, 979, 5108, 5750, 6218 |
| Bse118I | RCCGGY | 5 cut(s) | 154, 1007, 1334, 5743, 6211 |
| Bse1I | ACTGG | 8 cut(s) | 885, 1043, 1357, 3069, 3091, 3958, 5553, 6087 |
| Bse21I | CCTNAGG | 1 cut(s) | 1161 |
| Bse3DI | GCAATG | 2 cut(s) | 5365, 5620 |
| Bse8I | GATNNNNATC | 1 cut(s) | 144 |
| BseAI | TCCGGA | 3 cut(s) | 22, 1930, 2482 |
| BseBI | CCWGG | 3 cut(s) | 824, 1823, 4796 |
| BseCI | ATCGAT | 1 cut(s) | 2835 |
| BseJI | GATNNNNATC | 1 cut(s) | 144 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 254, 979, 5108, 5750, 6218 |
| BseMI | GCAATG | 2 cut(s) | 5365, 5620 |
| BseNI | ACTGG | 8 cut(s) | 885, 1043, 1357, 3069, 3091, 3958, 5553, 6087 |
| BseSI | GKGCMC | 2 cut(s) | 3105, 6053 |
| BseYI | CCCAGC | 1 cut(s) | 3398 |
| BsgI | GTGCAG | 4 cut(s) | 1195, 4401, 5688, 5750 |
| Bsh1236I | CGCG | 4 cut(s) | 187, 849, 3173, 5944 |
| BshNI | GGYRCC | 2 cut(s) | 965, 3431 |
| BshTI | ACCGGT | 2 cut(s) | 154, 5743 |
| BshVI | ATCGAT | 1 cut(s) | 2835 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3105 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1185, 4183 |
| BslFI | GGGAC | 2 cut(s) | 1163, 1328 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 254, 979, 5108, 5750, 6218 |
| BsmBI | CGTCTC | 3 cut(s) | 48, 1778, 6111 |
| BsmFI | GGGAC | 2 cut(s) | 1163, 1328 |
| BsmI | GAATGC | 2 cut(s) | 824, 1198 |
| Bso31I | GGTCTC | 2 cut(s) | 260, 5375 |
| BsoBI | CYCGRG | 2 cut(s) | 1185, 4183 |
| Bsp119I | TTCGAA | 2 cut(s) | 4139, 4380 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1638, 3105, 6053 |
| Bsp13I | TCCGGA | 3 cut(s) | 22, 1930, 2482 |
| Bsp1407I | TGTACA | 5 cut(s) | 1996, 2638, 3607, 3757, 4561 |
| Bsp143I | GATC | 9 cut(s) | 139, 244, 952, 2235, 2952, 3507, 5140, 5193, 6439 |
| Bsp19I | CCATGG | 1 cut(s) | 537 |
| BspDI | ATCGAT | 1 cut(s) | 2835 |
| BspEI | TCCGGA | 3 cut(s) | 22, 1930, 2482 |
| BspFNI | CGCG | 4 cut(s) | 187, 849, 3173, 5944 |
| BspHI | TCATGA | 3 cut(s) | 2323, 3742, 6442 |
| BspLI | GGNNCC | 7 cut(s) | 234, 558, 967, 2481, 3433, 6210, 6481 |
| BspMAI | CTGCAG | 2 cut(s) | 3670, 6354 |
| BspMI | ACCTGC | 6 cut(s) | 278, 1217, 2740, 3859, 4261, 6409 |
| BspPI | GGATC | 3 cut(s) | 147, 239, 2230 |
| BspT104I | TTCGAA | 2 cut(s) | 4139, 4380 |
| BspT107I | GGYRCC | 2 cut(s) | 965, 3431 |
| BspTI | CTTAAG | 1 cut(s) | 4720 |
| BspTNI | GGTCTC | 2 cut(s) | 260, 5375 |
| BsrBI | CCGCTC | 1 cut(s) | 4431 |
| BsrDI | GCAATG | 2 cut(s) | 5365, 5620 |
| BsrFI | RCCGGY | 5 cut(s) | 154, 1007, 1334, 5743, 6211 |
| BsrGI | TGTACA | 5 cut(s) | 1996, 2638, 3607, 3757, 4561 |
| BsrI | ACTGG | 8 cut(s) | 885, 1043, 1357, 3069, 3091, 3958, 5553, 6087 |
| BssAI | RCCGGY | 5 cut(s) | 154, 1007, 1334, 5743, 6211 |
| BssMI | GATC | 9 cut(s) | 139, 244, 952, 2235, 2952, 3507, 5140, 5193, 6439 |
| BssNI | GRCGYC | 2 cut(s) | 2517, 3432 |
| BssSI | CACGAG | 1 cut(s) | 2664 |
| Bst2BI | CACGAG | 1 cut(s) | 2664 |
| Bst2UI | CCWGG | 3 cut(s) | 824, 1823, 4796 |
| BstACI | GRCGYC | 2 cut(s) | 2517, 3432 |
| BstAFI | CTTAAG | 1 cut(s) | 4720 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 5249, 5496 |
| BstAUI | TGTACA | 5 cut(s) | 1996, 2638, 3607, 3757, 4561 |
| BstBAI | YACGTR | 2 cut(s) | 1363, 1661 |
| BstBI | TTCGAA | 2 cut(s) | 4139, 4380 |
| BstC8I | GCNNGC | 7 cut(s) | 1638, 2193, 3363, 3839, 3963, 4962, 5570 |
| BstDSI | CCRYGG | 4 cut(s) | 369, 504, 537, 3171 |
| BstFNI | CGCG | 4 cut(s) | 187, 849, 3173, 5944 |
| BstH2I | RGCGCY | 3 cut(s) | 591, 783, 3435 |
| BstHHI | GCGC | 5 cut(s) | 187, 590, 782, 2749, 3434 |
| BstKTI | GATC | 9 cut(s) | 142, 247, 955, 2238, 2955, 3510, 5143, 5196, 6442 |
| BstMBI | GATC | 9 cut(s) | 139, 244, 952, 2235, 2952, 3507, 5140, 5193, 6439 |
| BstNI | CCWGG | 3 cut(s) | 824, 1823, 4796 |
| BstNSI | RCATGY | 8 cut(s) | 404, 1455, 3098, 3189, 3245, 3365, 3372, 5499 |
| BstSCI | CCNGG | 7 cut(s) | 822, 1184, 1185, 1821, 4695, 4794, 5590 |
| BstSFI | CTRYAG | 4 cut(s) | 3660, 3666, 6000, 6350 |
| BstSLI | GKGCMC | 2 cut(s) | 3105, 6053 |
| BstUI | CGCG | 4 cut(s) | 187, 849, 3173, 5944 |
| BstV2I | GAAGAC | 1 cut(s) | 5301 |
| BstX2I | RGATCY | 2 cut(s) | 244, 2235 |
| BstYI | RGATCY | 2 cut(s) | 244, 2235 |
| Bsu15I | ATCGAT | 1 cut(s) | 2835 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1161 |
| BsuI | GTATCC | 2 cut(s) | 877, 5266 |
| BsuTUI | ATCGAT | 1 cut(s) | 2835 |
| BtgI | CCRYGG | 4 cut(s) | 369, 504, 537, 3171 |
| BtrI | CACGTC | 3 cut(s) | 1153, 2188, 4345 |
| BtsI | GCAGTG | 1 cut(s) | 5439 |
| BtsIMutI | CAGTG | 7 cut(s) | 860, 878, 906, 1275, 3381, 5439, 5546 |
| BveI | ACCTGC | 6 cut(s) | 278, 1217, 2740, 3859, 4261, 6409 |
| Cac8I | GCNNGC | 7 cut(s) | 1638, 2193, 3363, 3839, 3963, 4962, 5570 |
| CaiI | CAGNNNCTG | 1 cut(s) | 5018 |
| CciI | TCATGA | 3 cut(s) | 2323, 3742, 6442 |
| CfoI | GCGC | 5 cut(s) | 187, 590, 782, 2749, 3434 |
| Cfr10I | RCCGGY | 5 cut(s) | 154, 1007, 1334, 5743, 6211 |
| Cfr13I | GGNCC | 7 cut(s) | 490, 557, 1708, 2480, 2821, 4105, 6283 |
| Cfr42I | CCGCGG | 1 cut(s) | 3174 |
| Cfr9I | CCCGGG | 1 cut(s) | 1185 |
| ClaI | ATCGAT | 1 cut(s) | 2835 |
| CseI | GACGC | 1 cut(s) | 2724 |
| CspAI | ACCGGT | 2 cut(s) | 154, 5743 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1089, 1124 |
| DinI | GGCGCC | 1 cut(s) | 3433 |
| DpnI | GATC | 9 cut(s) | 141, 246, 954, 2237, 2954, 3509, 5142, 5195, 6441 |
| DpnII | GATC | 9 cut(s) | 139, 244, 952, 2235, 2952, 3507, 5140, 5193, 6439 |
| DraIII | CACNNNGTG | 1 cut(s) | 1082 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 89 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 89 |
| EaeI | YGGCCR | 1 cut(s) | 5640 |
| EciI | GGCGGA | 1 cut(s) | 3798 |
| Eco24I | GRGCYC | 1 cut(s) | 1638 |
| Eco31I | GGTCTC | 2 cut(s) | 260, 5375 |
| Eco32I | GATATC | 2 cut(s) | 709, 2833 |
| Eco47I | GGWCC | 6 cut(s) | 490, 557, 1708, 2480, 2821, 6283 |
| Eco47III | AGCGCT | 1 cut(s) | 589 |
| Eco72I | CACGTG | 2 cut(s) | 1363, 1661 |
| Eco81I | CCTNAGG | 1 cut(s) | 1161 |
| Eco88I | CYCGRG | 2 cut(s) | 1185, 4183 |
| EcoO109I | RGGNCCY | 4 cut(s) | 557, 1708, 4105, 6283 |
| EcoRII | CCWGG | 3 cut(s) | 822, 1821, 4794 |
| EcoRV | GATATC | 2 cut(s) | 709, 2833 |
| EcoT38I | GRGCYC | 1 cut(s) | 1638 |
| EgeI | GGCGCC | 1 cut(s) | 3433 |
| EheI | GGCGCC | 1 cut(s) | 3433 |
| Esp3I | CGTCTC | 3 cut(s) | 48, 1778, 6111 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 630, 662 |
| FaqI | GGGAC | 2 cut(s) | 1163, 1328 |
| FauI | CCCGC | 3 cut(s) | 43, 1140, 1645 |
| FauNDI | CATATG | 1 cut(s) | 3877 |
| FbaI | TGATCA | 1 cut(s) | 6439 |
| FblI | GTMKAC | 2 cut(s) | 93, 996 |
| FriOI | GRGCYC | 1 cut(s) | 1638 |
| GlaI | GCGC | 5 cut(s) | 186, 589, 781, 2748, 3433 |
| GsaI | CCCAGC | 1 cut(s) | 3402 |
| GsuI | CTGGAG | 5 cut(s) | 1374, 1844, 3108, 3483, 4817 |
| HaeII | RGCGCY | 3 cut(s) | 591, 783, 3435 |
| HgaI | GACGC | 1 cut(s) | 2724 |
| HhaI | GCGC | 5 cut(s) | 187, 590, 782, 2749, 3434 |
| Hin1I | GRCGYC | 2 cut(s) | 2517, 3432 |
| Hin6I | GCGC | 5 cut(s) | 185, 588, 780, 2747, 3432 |
| HinP1I | GCGC | 5 cut(s) | 185, 588, 780, 2747, 3432 |
| HincII | GTYRAC | 4 cut(s) | 69, 94, 5281, 6499 |
| HindII | GTYRAC | 4 cut(s) | 69, 94, 5281, 6499 |
| HindIII | AAGCTT | 3 cut(s) | 2410, 3835, 4237 |
| HpaI | GTTAAC | 2 cut(s) | 5281, 6499 |
| Hpy99I | CGWCG | 4 cut(s) | 1388, 2189, 2522, 2960 |
| Hsp92I | GRCGYC | 2 cut(s) | 2517, 3432 |
| HspAI | GCGC | 5 cut(s) | 185, 588, 780, 2747, 3432 |
| KasI | GGCGCC | 1 cut(s) | 3431 |
| Kpn2I | TCCGGA | 3 cut(s) | 22, 1930, 2482 |
| KpnI | GGTACC | 1 cut(s) | 969 |
| Ksp22I | TGATCA | 1 cut(s) | 6439 |
| KspAI | GTTAAC | 2 cut(s) | 5281, 6499 |
| KspI | CCGCGG | 1 cut(s) | 3174 |
| Kzo9I | GATC | 9 cut(s) | 139, 244, 952, 2235, 2952, 3507, 5140, 5193, 6439 |
| MalI | GATC | 9 cut(s) | 141, 246, 954, 2237, 2954, 3509, 5142, 5195, 6441 |
| MbiI | CCGCTC | 1 cut(s) | 4431 |
| MboI | GATC | 9 cut(s) | 139, 244, 952, 2235, 2952, 3507, 5140, 5193, 6439 |
| MfeI | CAATTG | 1 cut(s) | 5262 |
| MflI | RGATCY | 2 cut(s) | 244, 2235 |
| MhlI | GDGCHC | 3 cut(s) | 1638, 3105, 6053 |
| MluI | ACGCGT | 1 cut(s) | 5942 |
| Mly113I | GGCGCC | 1 cut(s) | 3432 |
| MlyI | GAGTC | 9 cut(s) | 216, 730, 1870, 2881, 3481, 3638, 5121, 5685, 6175 |
| MroI | TCCGGA | 3 cut(s) | 22, 1930, 2482 |
| MroXI | GAANNNNTTC | 3 cut(s) | 474, 3654, 6510 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3747, 5049 |
| MspA1I | CMGCKG | 7 cut(s) | 437, 1466, 1487, 1640, 3173, 3200, 3268 |
| MspCI | CTTAAG | 1 cut(s) | 4720 |
| MspR9I | CCNGG | 7 cut(s) | 824, 1186, 1187, 1823, 4697, 4796, 5592 |
| MunI | CAATTG | 1 cut(s) | 5262 |
| Mva1269I | GAATGC | 2 cut(s) | 824, 1198 |
| MvaI | CCWGG | 3 cut(s) | 824, 1823, 4796 |
| MvnI | CGCG | 4 cut(s) | 187, 849, 3173, 5944 |
| NarI | GGCGCC | 1 cut(s) | 3432 |
| NciI | CCSGG | 4 cut(s) | 1186, 1187, 4697, 5592 |
| NcoI | CCATGG | 1 cut(s) | 537 |
| NdeI | CATATG | 1 cut(s) | 3877 |
| NdeII | GATC | 9 cut(s) | 139, 244, 952, 2235, 2952, 3507, 5140, 5193, 6439 |
| NlaIV | GGNNCC | 7 cut(s) | 234, 558, 967, 2481, 3433, 6210, 6481 |
| NmeAIII | GCCGAG | 3 cut(s) | 2113, 2833, 5228 |
| NmuCI | GTSAC | 4 cut(s) | 37, 1045, 3007, 5677 |
| NspI | RCATGY | 8 cut(s) | 404, 1455, 3098, 3189, 3245, 3365, 3372, 5499 |
| NspV | TTCGAA | 2 cut(s) | 4139, 4380 |
| PaeI | GCATGC | 1 cut(s) | 3365 |
| PaeR7I | CTCGAG | 1 cut(s) | 4183 |
| PagI | TCATGA | 3 cut(s) | 2323, 3742, 6442 |
| PciI | ACATGT | 3 cut(s) | 400, 3094, 3368 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2832 |
| PctI | GAATGC | 2 cut(s) | 824, 1198 |
| PdmI | GAANNNNTTC | 3 cut(s) | 474, 3654, 6510 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 254 |
| PinAI | ACCGGT | 2 cut(s) | 154, 5743 |
| PleI | GAGTC | 9 cut(s) | 215, 729, 1869, 2881, 3480, 3637, 5120, 5684, 6174 |
| PluTI | GGCGCC | 1 cut(s) | 3435 |
| PmaCI | CACGTG | 2 cut(s) | 1363, 1661 |
| PmlI | CACGTG | 2 cut(s) | 1363, 1661 |
| PpsI | GAGTC | 9 cut(s) | 215, 729, 1869, 2881, 3480, 3637, 5120, 5684, 6174 |
| Ppu21I | YACGTR | 2 cut(s) | 1363, 1661 |
| PpuMI | RGGWCCY | 3 cut(s) | 557, 1708, 6283 |
| PscI | ACATGT | 3 cut(s) | 400, 3094, 3368 |
| Psp1406I | AACGTT | 2 cut(s) | 5408, 6254 |
| Psp5II | RGGWCCY | 3 cut(s) | 557, 1708, 6283 |
| Psp6I | CCWGG | 3 cut(s) | 822, 1821, 4794 |
| PspCI | CACGTG | 2 cut(s) | 1363, 1661 |
| PspFI | CCCAGC | 1 cut(s) | 3398 |
| PspGI | CCWGG | 3 cut(s) | 822, 1821, 4794 |
| PspN4I | GGNNCC | 7 cut(s) | 234, 558, 967, 2481, 3433, 6210, 6481 |
| PspPI | GGNCC | 7 cut(s) | 490, 557, 1708, 2480, 2821, 4105, 6283 |
| PspPPI | RGGWCCY | 3 cut(s) | 557, 1708, 6283 |
| PspXI | VCTCGAGB | 1 cut(s) | 4183 |
| PstI | CTGCAG | 2 cut(s) | 3670, 6354 |
| PstNI | CAGNNNCTG | 1 cut(s) | 5018 |
| PsuI | RGATCY | 2 cut(s) | 244, 2235 |
| PvuII | CAGCTG | 2 cut(s) | 1466, 3200 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3747, 5049 |
| SacII | CCGCGG | 1 cut(s) | 3174 |
| SalI | GTCGAC | 1 cut(s) | 92 |
| Sau3AI | GATC | 9 cut(s) | 139, 244, 952, 2235, 2952, 3507, 5140, 5193, 6439 |
| Sau96I | GGNCC | 7 cut(s) | 490, 557, 1708, 2480, 2821, 4105, 6283 |
| ScaI | AGTACT | 2 cut(s) | 5542, 5914 |
| SchI | GAGTC | 9 cut(s) | 216, 730, 1870, 2881, 3481, 3638, 5121, 5685, 6175 |
| ScrFI | CCNGG | 7 cut(s) | 824, 1186, 1187, 1823, 4697, 4796, 5592 |
| SduI | GDGCHC | 3 cut(s) | 1638, 3105, 6053 |
| SfcI | CTRYAG | 4 cut(s) | 3660, 3666, 6000, 6350 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 5648 |
| SfoI | GGCGCC | 1 cut(s) | 3433 |
| Sfr274I | CTCGAG | 1 cut(s) | 4183 |
| Sfr303I | CCGCGG | 1 cut(s) | 3174 |
| SfuI | TTCGAA | 2 cut(s) | 4139, 4380 |
| SgrBI | CCGCGG | 1 cut(s) | 3174 |
| SinI | GGWCC | 6 cut(s) | 490, 557, 1708, 2480, 2821, 6283 |
| SlaI | CTCGAG | 1 cut(s) | 4183 |
| SmaI | CCCGGG | 1 cut(s) | 1187 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3747, 5049 |
| SmlI | CTYRAG | 9 cut(s) | 1325, 1398, 1944, 3059, 3132, 4183, 4720, 5289, 5973 |
| SmoI | CTYRAG | 9 cut(s) | 1325, 1398, 1944, 3059, 3132, 4183, 4720, 5289, 5973 |
| SpeI | ACTAGT | 1 cut(s) | 1037 |
| SphI | GCATGC | 1 cut(s) | 3365 |
| SspDI | GGCGCC | 1 cut(s) | 3431 |
| SspI | AATATT | 6 cut(s) | 1759, 1804, 1918, 2117, 3415, 3684 |
| StyD4I | CCNGG | 7 cut(s) | 822, 1184, 1185, 1821, 4695, 4794, 5590 |
| TauI | GCSGC | 1 cut(s) | 3398 |
| TscAI | CASTG | 7 cut(s) | 867, 885, 906, 1282, 3388, 5439, 5553 |
| TseFI | GTSAC | 4 cut(s) | 37, 1045, 3007, 5677 |
| Tsp45I | GTSAC | 4 cut(s) | 37, 1045, 3007, 5677 |
| TspMI | CCCGGG | 1 cut(s) | 1185 |
| TspRI | CASTG | 7 cut(s) | 867, 885, 906, 1282, 3388, 5439, 5553 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 254 |
| Vha464I | CTTAAG | 1 cut(s) | 4720 |
| VneI | GTGCAC | 1 cut(s) | 3101 |
| VpaK11BI | GGWCC | 6 cut(s) | 490, 557, 1708, 2480, 2821, 6283 |
| XbaI | TCTAGA | 2 cut(s) | 2788, 3337 |
| XceI | RCATGY | 8 cut(s) | 404, 1455, 3098, 3189, 3245, 3365, 3372, 5499 |
| XhoI | CTCGAG | 1 cut(s) | 4183 |
| XmaI | CCCGGG | 1 cut(s) | 1185 |
| XmiI | GTMKAC | 2 cut(s) | 93, 996 |
| XmnI | GAANNNNTTC | 3 cut(s) | 474, 3654, 6510 |
| ZraI | GACGTC | 1 cut(s) | 2518 |
| ZrmI | AGTACT | 2 cut(s) | 5542, 5914 |