Rorug02G0562600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001371
Physical Location & Seq
Forward (+)
68786432 .. 68786927
496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0562600.1

Sequence Viewer

Length: 381 bp
ATGGAATCTGGGGTTAAAAATGCTGCGGCTGGTTTGATTATAAGGAAGCGGACACAAGTTCATGAATCTGAAGCCAGTGATGATTCTCATAAACTGTCGACCTCTAATTCCTCCATAGGAGATGGACTCGTGGCAGAGGATACTGTAACACTGTTGTTAAAGCATAACAGAGGCTATTATGCATCAGATGATGATAAATCCTCTGAAAGACAAGATACGTCACAAGGGAAACAACAGAGCAAGGGTAACAAGCCCAAAAAAAGAGTACTTGGTCCCGACAGACCTTCATTTCTTGATAGTGATTCTACTGAAACATGGGTGCCTCCTGAAGGACAATCTGGTGATGGACGAACATCCTTGAAAGATCGATATGGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.76

Weight (kDa)

6.29

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 98
AciI CCGC 2 cut(s) 26, 49
AcuI CTGAAG 2 cut(s) 90, 348
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 361
ApeKI GCWGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 319
BauI CACGAG 1 cut(s) 128
BbvI GCAGC 1 cut(s) 10
BccI CCATC 2 cut(s) 116, 338
BciVI GTATCC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 2 cut(s) 24, 27
BlsI GCNGC 2 cut(s) 25, 28
BmcAI AGTACT 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 274, 321
BmsI GCATC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bsa29I ATCGAT 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 367
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 367
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 2 cut(s) 26, 49
BspDI ATCGAT 1 cut(s) 367
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 274, 321
BspT107I GGYRCC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 75
BssMI GATC 1 cut(s) 364
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 96, 145, 153
BstENI CCTNNNNNAGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 1 cut(s) 367
BstMBI GATC 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 367
BsuI GTATCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 367
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 82, 149
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 367
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 62, 315
CviJI RGCY 5 cut(s) 29, 74, 174, 253, 375
CviKI_1 RGCY 5 cut(s) 29, 74, 174, 253, 375
CviQI GTAC 1 cut(s) 266
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 90, 348
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 184
FaeI CATG 2 cut(s) 65, 318
FaiI YATR 8 cut(s) 41, 63, 90, 116, 165, 180, 316, 372
FaqI GGGAC 1 cut(s) 258
FatI CATG 2 cut(s) 61, 314
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 24, 27
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 2 cut(s) 24, 27
GluI GCNGC 2 cut(s) 24, 27
Hin1II CATG 2 cut(s) 65, 318
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 5 cut(s) 5, 65, 83, 126, 302
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 3 cut(s) 70, 187, 205
Hpy188III TCNNGA 4 cut(s) 62, 275, 293, 326
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 294, 323
HpyCH4III ACNGT 3 cut(s) 96, 145, 153
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 65, 318
Kzo9I GATC 1 cut(s) 364
LpnPI CCDG 4 cut(s) 15, 88, 324, 339
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 191
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 145, 219, 245
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 6 cut(s) 112, 121, 130, 164, 211, 333
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 2 cut(s) 15, 158
NdeII GATC 1 cut(s) 364
NlaIII CATG 2 cut(s) 65, 318
NlaIV GGNNCC 2 cut(s) 274, 321
NmuCI GTSAC 1 cut(s) 219
NsiI ATGCAT 1 cut(s) 184
PagI TCATGA 1 cut(s) 61
PfeI GAWTC 4 cut(s) 5, 65, 83, 302
PkrI GCNGC 2 cut(s) 25, 28
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PsiI TTATAA 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 274, 321
PspPI GGNCC 1 cut(s) 272
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SalI GTCGAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 15, 158
SatI GCNGC 2 cut(s) 24, 27
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 267
SchI GAGTC 1 cut(s) 120
SetI ASST 3 cut(s) 104, 221, 286
SfaNI GCATC 1 cut(s) 191
SinI GGWCC 1 cut(s) 272
Sse9I AATT 1 cut(s) 106
SsiI CCGC 2 cut(s) 26, 49
TaaI ACNGT 3 cut(s) 96, 145, 153
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 98, 367
TasI AATT 1 cut(s) 106
TatI WGTACW 1 cut(s) 265
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 4 cut(s) 5, 65, 83, 302
Tru1I TTAA 2 cut(s) 15, 158
Tru9I TTAA 2 cut(s) 15, 158
TscAI CASTG 2 cut(s) 82, 156
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 3 cut(s) 50, 78, 276
TspRI CASTG 2 cut(s) 82, 156
VpaK11BI GGWCC 1 cut(s) 272
XagI CCTNNNNNAGG 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 98
ZrmI AGTACT 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.