RchiOBHm_Chr5g0078711
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84523940 .. 84527330
3391 bp
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UTR
Exon/CDS
Intron
PRQ35321

Sequence Viewer

Length: 438 bp
ATGGCAAGAAACGTATGGATTATGAGGTGTTTGAGCTGTTTCATTTCAAAGATGTCAACTAGTTTACTTTCCAAAGAGGCCTTGGCAAAGAAACAATCCACCAAAACTGGAGAGGCCGTTGAATTATTGTCAACAGGAAAGAGCCATATTGGTGCAGCTAATGAAAGACTAGACAATGTGTTCGGCAATCTCACCAATCAGCGAGGAATGGTTCTTCCTTTTGAACCGCTCTCAGCTACATCTGATAAAATCAGATATGCTGTTGACATGCCACAGTTCAGACCATACGATAGAAGTTCCAGGGAACATAGTCTAGATGAAGCAAAGGGAAAGATTCAGGAGACAACTATTCATTTGTGGATTGAAAATCAGGGAGATAAAATGAACTGTGAAAATGGCGCAACTGAAGGCACATATCTCGCAGAAAAGGTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

145

Amino Acids

16.22

Weight (kDa)

7.67

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 229
AciI CCGC 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 426
AgsI TTSAA 4 cut(s) 48, 122, 224, 365
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 3 cut(s) 36, 158, 236
AluI AGCT 3 cut(s) 36, 158, 236
Alw26I GTCTC 1 cut(s) 335
AoxI GGCC 2 cut(s) 78, 114
ApeKI GCWGC 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspLEI GCGC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 184
BbvI GCAGC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 335
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 3 cut(s) 60, 170, 314
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 81, 300
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 81, 300
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 2 cut(s) 80, 116
BsmAI GTCTC 1 cut(s) 335
BsnI GGCC 2 cut(s) 80, 116
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 80, 116
BspCNI CTCAG 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 81, 300
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 276, 389
BstDEI CTNAG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 401
BstMAI GTCTC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 2 cut(s) 80, 116
CfoI GCGC 1 cut(s) 401
CviAII CATG 1 cut(s) 268
CviJI RGCY 6 cut(s) 36, 80, 116, 144, 158, 236
CviKI_1 RGCY 6 cut(s) 36, 80, 116, 144, 158, 236
DdeI CTNAG 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 271
FaiI YATR 8 cut(s) 16, 23, 147, 258, 269, 286, 309, 415
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 60, 170, 314
GlaI GCGC 1 cut(s) 400
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 80, 116
HhaI GCGC 1 cut(s) 401
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 3 cut(s) 57, 132, 265
HindII GTYRAC 3 cut(s) 57, 132, 265
HinfI GANTC 1 cut(s) 334
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 4 cut(s) 57, 65, 132, 265
Hpy188I TCNGA 3 cut(s) 244, 254, 281
Hpy188III TCNNGA 2 cut(s) 314, 338
Hpy8I GTNNAC 4 cut(s) 57, 65, 132, 265
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 2 cut(s) 276, 389
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 399
LpnPI CCDG 6 cut(s) 93, 120, 286, 313, 323, 356
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 3 cut(s) 60, 170, 314
MaeII ACGT 1 cut(s) 12
MbiI CCGCTC 1 cut(s) 229
MboII GAAGA 1 cut(s) 206
MluCI AATT 1 cut(s) 122
MnlI CCTC 4 cut(s) 18, 70, 106, 197
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
NlaIII CATG 1 cut(s) 271
NspI RCATGY 1 cut(s) 271
PceI AGGCCT 1 cut(s) 80
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 150
SatI GCNGC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 301
SetI ASST 6 cut(s) 15, 29, 38, 160, 238, 432
SmiMI CAYNNNNRTG 1 cut(s) 150
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 1 cut(s) 122
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 1 cut(s) 227
SspMI CTAG 3 cut(s) 60, 170, 314
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 276, 389
TaiI ACGT 1 cut(s) 15
TasI AATT 1 cut(s) 122
TfiI GAWTC 1 cut(s) 334
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 5 cut(s) 31, 177, 333, 341, 398
XbaI TCTAGA 1 cut(s) 313
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 3 cut(s) 60, 170, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.