Rorug02G0562800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001371
Physical Location & Seq
Forward (+)
68798818 .. 68801625
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0562800.1

Sequence Viewer

Length: 489 bp
ATGACTCGCTGCCCAAATACAAAGGCTGAAGTCTCTTGTGGAACTGAAACTGATTGGGTACAGGACTCTATCCTGTCATATCAATCATTAACCACAGCTGCTTGCCGAATTCTGTTCTATTATTTGAGGGAATGTCAGCTGTTGTTCGTGCTGTTCAACATATACCCAAAGGAGCTGAGGGTCATTAATTACGAGGATATCCAAGAAAGTGCAATTCTGGAAGGCTACCGATGCAAGGATAATAACCAACAAATGCGATGGTTTTTTGCTTCGCAACTCTGGTATGGAATTACTAAAGACGTCGGATCTCTCTCTCCCTCCCTCCATCCCTCCGGCAAGTCGCCCACGACGCCTGCTCTAGCCATCGCCGCGCCGAAACTCGTCGTCGTGCTCTCCGCTGCCAGGCTCGACGCCAAGCCGACGGTCCTCGTCGCTGAGAAGCTCGGCGAGGCCGGGGTTGACCTTCTGAAGGAATCGACGACGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.07

Weight (kDa)

5.47

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
AccII CGCG 1 cut(s) 371
AciI CCGC 2 cut(s) 369, 396
AclWI GGATC 1 cut(s) 313
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 48, 488
AcyI GRCGYC 3 cut(s) 300, 350, 411
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 3 cut(s) 235, 402, 469
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 401
AluBI AGCT 4 cut(s) 98, 139, 175, 442
AluI AGCT 4 cut(s) 98, 139, 175, 442
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 313
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 3 cut(s) 9, 98, 398
ApoI RAATTY 1 cut(s) 108
AseI ATTAAT 1 cut(s) 186
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 424
AsuC2I CCSGG 1 cut(s) 454
AvaII GGWCC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 85, 385
BccI CCATC 3 cut(s) 252, 333, 371
BciT130I CCWGG 1 cut(s) 403
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 359
BisI GCNGC 4 cut(s) 10, 99, 369, 399
BlsI GCNGC 4 cut(s) 11, 100, 370, 400
Bme1390I CCNGG 2 cut(s) 403, 454
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 424
BmrFI CCNGG 2 cut(s) 403, 454
BmsI GCATC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 454
BsaHI GRCGYC 3 cut(s) 300, 350, 411
BsaJI CCNNGG 1 cut(s) 453
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 402, 469
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 3 cut(s) 235, 402, 469
BseMII CTCAG 2 cut(s) 167, 426
BseXI GCAGC 2 cut(s) 85, 385
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 2 cut(s) 333, 453
BslI CCNNNNNNNGG 3 cut(s) 235, 402, 469
BsmAI GTCTC 1 cut(s) 37
BsnI GGCC 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 1 cut(s) 305
BspACI CCGC 2 cut(s) 369, 396
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 2 cut(s) 168, 427
BspFNI CGCG 1 cut(s) 371
BspPI GGATC 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 1 cut(s) 305
BssNI GRCGYC 3 cut(s) 300, 350, 411
Bst2UI CCWGG 1 cut(s) 403
Bst4CI ACNGT 1 cut(s) 424
BstACI GRCGYC 3 cut(s) 300, 350, 411
BstC8I GCNNGC 2 cut(s) 103, 354
BstDEI CTNAG 2 cut(s) 176, 435
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 1 cut(s) 308
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 305
BstMWI GCNNNNNNNGC 3 cut(s) 231, 349, 368
BstNI CCWGG 1 cut(s) 403
BstSCI CCNGG 2 cut(s) 401, 452
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 85, 385
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 1 cut(s) 452
BtgZI GCGATG 2 cut(s) 271, 349
BtsCI GGATG 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 103, 354
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 424
CseI GACGC 2 cut(s) 358, 419
Csp6I GTAC 1 cut(s) 59
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 2 cut(s) 176, 435
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 2 cut(s) 48, 488
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 401
EcoRV GATATC 1 cut(s) 199
FaiI YATR 4 cut(s) 79, 161, 163, 285
Fnu4HI GCNGC 4 cut(s) 10, 99, 369, 399
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 4 cut(s) 10, 99, 369, 399
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 372
GluI GCNGC 4 cut(s) 10, 99, 369, 399
HaeIII GGCC 1 cut(s) 452
HapII CCGG 2 cut(s) 333, 453
HgaI GACGC 2 cut(s) 358, 419
HhaI GCGC 1 cut(s) 373
Hin1I GRCGYC 3 cut(s) 300, 350, 411
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 3 cut(s) 4, 65, 473
HpaII CCGG 2 cut(s) 333, 453
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 2 cut(s) 305, 468
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 460
Hpy99I CGWCG 9 cut(s) 305, 352, 386, 389, 413, 424, 434, 481, 484
HpyAV CCTTC 3 cut(s) 215, 463, 473
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 212, 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 349, 368
HpyF3I CTNAG 2 cut(s) 176, 435
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 3 cut(s) 300, 350, 411
HspAI GCGC 1 cut(s) 371
Kzo9I GATC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 9 cut(s) 47, 86, 203, 265, 346, 366, 388, 415, 466
Lsp1109I GCAGC 2 cut(s) 85, 385
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 300
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 4 cut(s) 108, 187, 213, 288
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 8 cut(s) 120, 171, 187, 328, 332, 340, 437, 442
MseI TTAA 2 cut(s) 89, 186
MspA1I CMGCKG 3 cut(s) 98, 139, 398
MspI CCGG 2 cut(s) 333, 453
MspR9I CCNGG 2 cut(s) 403, 454
MvaI CCWGG 1 cut(s) 403
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 231, 349, 368
NciI CCSGG 1 cut(s) 454
NdeII GATC 1 cut(s) 305
NmeAIII GCCGAG 1 cut(s) 423
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 4 cut(s) 11, 100, 370, 400
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 401
PspPI GGNCC 1 cut(s) 424
PsuI RGATCY 1 cut(s) 305
PvuII CAGCTG 2 cut(s) 98, 139
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 89, 186
SatI GCNGC 4 cut(s) 10, 99, 369, 399
Sau3AI GATC 1 cut(s) 305
Sau96I GGNCC 1 cut(s) 424
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 403, 454
SduI GDGCHC 1 cut(s) 393
SetI ASST 6 cut(s) 100, 141, 177, 303, 444, 465
SfaNI GCATC 1 cut(s) 221
SinI GGWCC 1 cut(s) 424
Sse9I AATT 4 cut(s) 108, 187, 213, 288
SsiI CCGC 2 cut(s) 369, 396
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 401, 452
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 408, 476
TasI AATT 4 cut(s) 108, 187, 213, 288
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 2 cut(s) 89, 186
Tru9I TTAA 2 cut(s) 89, 186
TseI GCWGC 3 cut(s) 9, 98, 398
VpaK11BI GGWCC 1 cut(s) 424
VspI ATTAAT 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 108
XspI CTAG 1 cut(s) 359
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.