Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036573.1

Orthogroup ID

OG0001371

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 463

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036573.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgcagaaaggagaaggggtagacagaagcgtgccaatcgaacagttgcacagaactgtcgaccaatgttctccagttgaattgaataaatccaaaggtgacttggatcagcatcctgaaactcacactgacaaaccttttgcagatggtgaaaatgtacaggtagaatatagtatgaaagttgaaagcaagaatgacagctttggaatttcagagggtgaacattttttggacccactctcggagatttcccaagccggccaatcaaatcaagcaggaatggagataccaaagaatgaagcgcagcttcagaaaggcacacaagttggtgagggagtacaagaaacaggcactgaagaaaatgaagtcattgaagaaagacaggagaagttcgaacaagatattgaaaagcatgacattgtaaatgctgcaggaatcatttcagagatcacgaaaactgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.02

Weight (kDa)

4.47

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40450 AT5G40450
fragaria_vesca	FvH4_6g51240 FvH4_6g51240 FvH4_6g51240
malus_domestica	MD09G1027400.v1.1 MD17G1027400.v1.1
prunus_persica	Prupe.3G291300_v2.0.a1 Prupe.3G291300_v2.0.a1
pyrus_communis	pycom111g02140 pycom17g02230 pycom17g02240 pycom17g02250
rosa_chinensis	RchiOBHm_Chr2g0172841 RchiOBHm_Chr2g0172861 RchiOBHm_Chr5g0078711 RchiOBHm_Chr7g0216841
rosa_laevigata	RLG00000021670 RLG00000022134 RLG00000028205
rosa_multiflora	Rmu_co8257395.1_g000001 Rmu_sc0002979.1_g000007 Rmu_sc0024990.1_g000001 Rmu_sc0036573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079480 Rroxscaffold_5G00333390 Rroxscaffold_7G00202120
rosa_rugosa	Rorug02G0562000 Rorug02G0562100 Rorug02G0562200 Rorug02G0562300 Rorug02G0562400 Rorug02G0562500 Rorug02G0562600 Rorug02G0562700 Rorug02G0562800 Rorug02G0562900 Rorug02G0562900 Rorug03G0301200 Rorug05G0513600
rosa_samantha	Rh1CG021300 Rh2AG639700 Rh2BG653100 Rh2CG618900 Rh2DG666800 Rh4AG006000 Rh4DG005000 Rh4DG005300 Rh4DG126700 Rh6CG196000
rosa_wichuraiana	Rw2G052810 Rw5G035440 Rw6G002440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	21, 60
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	2 cut(s)	293, 375
AfaI	GTAC	2 cut(s)	159, 339
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	5 cut(s)	80, 85, 185, 374, 407
AluBI	AGCT	2 cut(s)	201, 307
AluI	AGCT	2 cut(s)	201, 307
AlwI	GGATC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	304, 428
ApoI	RAATTY	1 cut(s)	207
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
Asp700I	GAANNNNTTC	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	4 cut(s)	110, 161, 230, 341
AsuII	TTCGAA	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	316, 415
BccI	CCATC	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	305, 429
BlsI	GCNGC	2 cut(s)	306, 430
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	111
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	111
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	316, 415
BshFI	GGCC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	241
BsnI	GGCC	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	106, 447
BspANI	GGCC	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	2 cut(s)	106, 447
Bst4CI	ACNGT	2 cut(s)	45, 58
BstAUI	TGTACA	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	32, 259
BstF5I	GGATG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	109, 450
BstMBI	GATC	2 cut(s)	106, 447
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	316, 415
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	126, 351
Cac8I	GCNNGC	2 cut(s)	32, 259
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	158, 338
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	4 cut(s)	201, 257, 261, 307
CviKI_1	RGCY	4 cut(s)	201, 257, 261, 307
CviQI	GTAC	2 cut(s)	158, 338
DpnI	GATC	2 cut(s)	108, 449
DpnII	GATC	2 cut(s)	106, 447
EaeI	YGGCCR	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	293, 375
FaeI	CATG	1 cut(s)	416
FaiI	YATR	3 cut(s)	171, 176, 414
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FatI	CATG	1 cut(s)	412
FblI	GTMKAC	2 cut(s)	21, 60
Fnu4HI	GCNGC	2 cut(s)	305, 429
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	305, 429
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	2 cut(s)	305, 429
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	4 cut(s)	110, 161, 230, 341
Hpy166II	GTNNAC	3 cut(s)	22, 61, 221
Hpy188I	TCNGA	4 cut(s)	214, 244, 312, 445
Hpy188III	TCNNGA	2 cut(s)	116, 451
Hpy8I	GTNNAC	3 cut(s)	22, 61, 221
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	2 cut(s)	45, 58
HpyCH4V	TGCA	4 cut(s)	4, 49, 143, 431
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	1 cut(s)	302
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	106, 447
LpnPI	CCDG	9 cut(s)	87, 129, 146, 261, 271, 333, 368, 417, 444
Lsp1109I	GCAGC	2 cut(s)	316, 415
LweI	GCATC	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	2 cut(s)	108, 449
MboI	GATC	2 cut(s)	106, 447
MboII	GAAGA	2 cut(s)	368, 386
MluCI	AATT	2 cut(s)	80, 207
MnlI	CCTC	2 cut(s)	208, 325
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	439
MspI	CCGG	1 cut(s)	258
NaeI	GCCGGC	1 cut(s)	259
NdeII	GATC	2 cut(s)	106, 447
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	98
NspV	TTCGAA	1 cut(s)	393
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	306, 430
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	159, 339
RsaNI	GTAC	2 cut(s)	158, 338
SalI	GTCGAC	1 cut(s)	59
SatI	GCNGC	2 cut(s)	305, 429
Sau3AI	GATC	2 cut(s)	106, 447
Sau96I	GGNCC	1 cut(s)	232
SetI	ASST	5 cut(s)	100, 139, 165, 203, 309
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	393
SinI	GGWCC	1 cut(s)	232
Sse9I	AATT	2 cut(s)	80, 207
TaaI	ACNGT	2 cut(s)	45, 58
TaqI	TCGA	3 cut(s)	39, 60, 393
TasI	AATT	2 cut(s)	80, 207
TatI	WGTACW	2 cut(s)	157, 337
TfiI	GAWTC	1 cut(s)	435
TscAI	CASTG	2 cut(s)	133, 358
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	304, 428
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	191, 312, 378
TspRI	CASTG	2 cut(s)	133, 358
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmiI	GTMKAC	2 cut(s)	21, 60
XmnI	GAANNNNTTC	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.