Rmu_co8257395.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8257395.1
OG0001371
Physical Location & Seq
Forward (+)
1 .. 802
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8257395.1_g000001.1.cds

Sequence Viewer

Length: 713 bp
gccagtgacatttcaactgagtgtgttccagaggatatagacgaaaagcttaaagaatgcatagaggaggcagttgagtccaaagagcaaatcatagaaggcaaagccgtgagttttacaccagagtccattgaagatgatacggttaagaactctcaagacagtgaaaaagagacaatagagctaaaggaagaggagagctgtacagagagcataaaagaagaaaatgctagtgaactctcaccagagtacattcaagaagatggaagcaaaaatttcaaagatgacaaggaggatgcattgaaatccgaagaggagattcttgaagattcacagactgtgggtgtagttgagagcactacatgtgagacagttaatgtcgaaagatctgaagacattcttattgcattaccagcgaaatatgatgaggggagcagccctgctccaacagaagcttcgaagcaggagaatattgatgaggacacatcttctgtccaagagactaaagacaaggatggtgaagttactgttactgaaacaagtgcagaggcaccatcaaatgatgaagatgattcaccacaggtcttacagaaatatgaaccagaagaggaacttacaatattgcgagatgcgcagcctgaagaaatgaagccagaaccatcaagtgaaattgaagaagtaataacctgcacaaaagaggaaacacaagaatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.46

Weight (kDa)

4.05

Isoelectric Point (pI)

95.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 695
AccB1I GGYRCC 1 cut(s) 550
AcsI RAATTY 1 cut(s) 274
AcuI CTGAAG 2 cut(s) 411, 660
AfaI GTAC 2 cut(s) 205, 251
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 7 cut(s) 15, 134, 257, 280, 304, 326, 674
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 4 cut(s) 49, 184, 201, 455
AluI AGCT 4 cut(s) 49, 184, 201, 455
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 3 cut(s) 167, 362, 494
ApeKI GCWGC 2 cut(s) 435, 634
ApoI RAATTY 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 634
AsuHPI GGTGA 3 cut(s) 234, 530, 567
AsuII TTCGAA 1 cut(s) 458
BanI GGYRCC 1 cut(s) 550
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 447, 646
BccI CCATC 4 cut(s) 257, 509, 562, 667
BceAI ACGGC 1 cut(s) 92
BcoDI GTCTC 3 cut(s) 167, 362, 494
BfaI CTAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 695
BglII AGATCT 1 cut(s) 386
BisI GCNGC 2 cut(s) 436, 635
BlsI GCNGC 2 cut(s) 437, 636
BmiI GGNNCC 1 cut(s) 552
BmsI GCATC 2 cut(s) 286, 619
BpiI GAAGAC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 141
BseGI GGATG 2 cut(s) 301, 520
BseMII CTCAG 1 cut(s) 9
BseRI GAGGAG 3 cut(s) 80, 209, 329
BseXI GCAGC 2 cut(s) 447, 646
BsgI GTGCAG 2 cut(s) 564, 673
BshNI GGYRCC 1 cut(s) 550
BsiHKAI GWGCWC 1 cut(s) 359
BsmAI GTCTC 3 cut(s) 167, 362, 494
BsmI GAATGC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 359
Bsp1407I TGTACA 1 cut(s) 203
Bsp143I GATC 1 cut(s) 386
BspCNI CTCAG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 552
BspMI ACCTGC 1 cut(s) 695
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 550
BsrGI TGTACA 1 cut(s) 203
BssMI GATC 1 cut(s) 386
Bst4CI ACNGT 5 cut(s) 145, 164, 340, 373, 529
Bst6I CTCTTC 3 cut(s) 186, 306, 600
BstAUI TGTACA 1 cut(s) 203
BstBI TTCGAA 1 cut(s) 458
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 301, 520
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 1 cut(s) 389
BstMAI GTCTC 3 cut(s) 167, 362, 494
BstMBI GATC 1 cut(s) 386
BstMWI GCNNNNNNNGC 2 cut(s) 413, 631
BstNSI RCATGY 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 447, 646
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BtsCI GGATG 2 cut(s) 301, 520
BtsIMutI CAGTG 2 cut(s) 10, 169
BveI ACCTGC 1 cut(s) 695
CfoI GCGC 1 cut(s) 634
Csp6I GTAC 2 cut(s) 204, 250
CviAII CATG 1 cut(s) 363
CviJI RGCY 8 cut(s) 49, 107, 184, 201, 438, 455, 637, 652
CviKI_1 RGCY 8 cut(s) 49, 107, 184, 201, 438, 455, 637, 652
CviQI GTAC 2 cut(s) 204, 250
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
Eam1104I CTCTTC 3 cut(s) 186, 306, 600
EarI CTCTTC 3 cut(s) 186, 306, 600
Eco57I CTGAAG 2 cut(s) 411, 660
EcoT22I ATGCAT 2 cut(s) 62, 301
FaeI CATG 1 cut(s) 366
FaiI YATR 7 cut(s) 38, 62, 95, 215, 364, 423, 597
FalI AAGNNNNNCTT 4 cut(s) 384, 416, 597, 629
FatI CATG 1 cut(s) 362
Fnu4HI GCNGC 2 cut(s) 436, 635
FokI GGATG 2 cut(s) 308, 527
Fsp4HI GCNGC 2 cut(s) 436, 635
FspBI CTAG 1 cut(s) 231
FspI TGCGCA 1 cut(s) 633
GlaI GCGC 1 cut(s) 633
GluI GCNGC 2 cut(s) 436, 635
HhaI GCGC 1 cut(s) 634
Hin1II CATG 1 cut(s) 366
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HindIII AAGCTT 2 cut(s) 47, 453
HinfI GANTC 6 cut(s) 77, 125, 319, 329, 572, 710
HphI GGTGA 3 cut(s) 234, 530, 567
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 310, 391
Hpy188III TCNNGA 4 cut(s) 29, 158, 257, 323
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 5 cut(s) 145, 164, 340, 373, 529
HpyCH4V TGCA 5 cut(s) 60, 299, 407, 545, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 631
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 366
HspAI GCGC 1 cut(s) 632
Kzo9I GATC 1 cut(s) 386
LmnI GCTCC 2 cut(s) 432, 448
Lsp1109I GCAGC 2 cut(s) 447, 646
LweI GCATC 2 cut(s) 286, 619
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 5, 523, 529
MalI GATC 1 cut(s) 388
MboI GATC 1 cut(s) 386
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 2 cut(s) 274, 669
MlyI GAGTC 2 cut(s) 86, 134
MmeI TCCRAC 1 cut(s) 470
Mph1103I ATGCAT 2 cut(s) 62, 301
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 3 cut(s) 51, 147, 375
Mva1269I GAATGC 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 413, 631
NdeII GATC 1 cut(s) 386
NlaIII CATG 1 cut(s) 366
NlaIV GGNNCC 1 cut(s) 552
NmuCI GTSAC 1 cut(s) 5
NsbI TGCGCA 1 cut(s) 633
NsiI ATGCAT 2 cut(s) 62, 301
NspI RCATGY 1 cut(s) 366
NspV TTCGAA 1 cut(s) 458
PciI ACATGT 1 cut(s) 362
PctI GAATGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 4 cut(s) 319, 329, 572, 710
PkrI GCNGC 2 cut(s) 437, 636
PleI GAGTC 2 cut(s) 85, 133
PpsI GAGTC 2 cut(s) 85, 133
PscI ACATGT 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 552
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 2 cut(s) 205, 251
RsaNI GTAC 2 cut(s) 204, 250
SaqAI TTAA 3 cut(s) 51, 147, 375
SatI GCNGC 2 cut(s) 436, 635
Sau3AI GATC 1 cut(s) 386
SchI GAGTC 2 cut(s) 86, 134
SduI GDGCHC 1 cut(s) 359
SetI ASST 6 cut(s) 51, 186, 203, 457, 585, 689
SfaNI GCATC 2 cut(s) 286, 619
SfuI TTCGAA 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 274, 669
SspI AATATT 2 cut(s) 472, 621
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 5 cut(s) 145, 164, 340, 373, 529
TaqI TCGA 2 cut(s) 381, 458
TasI AATT 2 cut(s) 274, 669
TatI WGTACW 2 cut(s) 203, 249
TfiI GAWTC 4 cut(s) 319, 329, 572, 710
Tru1I TTAA 3 cut(s) 51, 147, 375
Tru9I TTAA 3 cut(s) 51, 147, 375
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 2 cut(s) 435, 634
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 579, 612, 662
TspRI CASTG 1 cut(s) 169
XapI RAATTY 1 cut(s) 274
XceI RCATGY 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 2 cut(s) 62, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.