RLG00000028205
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001371
Physical Location & Seq
Forward (+)
19999308 .. 20002790
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028205

Sequence Viewer

Length: 537 bp
ATGCGCTTGGTTTGGCCTTACAGGTTTGAAACAAGATCATCAGTTACAACATTTGCTGAAGAAAAGTTCTCCAGAGATGGTATTCAAAATGAAAACAAATTGCTTCTTAGGAGCCCGCATGCGCAATATATACTTTCCAAAGAGGCCCTGGCAAAGAAACAATCAACCAAAACTGGAGAGGCCGTTGAATTATTGTCAACAGGAAAAAGCTATATTGGTGCAGCTAATGAAAGACTAGACAATGTGTTCGGCAATTTCACCAATCAGCGAGGAATGGTTCTTCCTTTTGAACCGCTCTCAGCTACATCTGATAAAATCAGATATGCTGTTGACATGCCACAGTTCAGACCATACGATAGAAGTTCCAGGGACCATAGTCCAAATGAAGCAAAGGGAAAGATTCAGGAGACAACTATTCATTTGCGGATTGAAAATCAGGGAGATAAAATGAACTATGAAAATGGCGCAACTGAAGGCACATATCTAGCAGAAAAGGACTCACAAAATCAAGTAATAGATGCACAAGTCAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

179

Amino Acids

20.2

Weight (kDa)

6.85

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 295
AciI CCGC 3 cut(s) 116, 293, 424
AcuI CTGAAG 2 cut(s) 78, 492
AgsI TTSAA 5 cut(s) 29, 86, 188, 290, 431
AjnI CCWGG 2 cut(s) 147, 365
AluBI AGCT 3 cut(s) 210, 224, 302
AluI AGCT 3 cut(s) 210, 224, 302
Alw26I GTCTC 1 cut(s) 401
AoxI GGCC 3 cut(s) 14, 144, 180
ApeKI GCWGC 1 cut(s) 221
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 3 cut(s) 6, 124, 467
AspS9I GGNCC 2 cut(s) 145, 370
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 2 cut(s) 149, 367
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 2 cut(s) 236, 485
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 149, 367
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 145, 370
BmiI GGNNCC 2 cut(s) 113, 371
BmrFI CCNGG 2 cut(s) 149, 367
BmsI GCATC 1 cut(s) 508
BoxI GACNNNNGTC 1 cut(s) 375
BpmI CTGGAG 2 cut(s) 55, 195
BsaJI CCNNGG 2 cut(s) 147, 366
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 2 cut(s) 149, 367
BseDI CCNNGG 2 cut(s) 147, 366
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 3 cut(s) 16, 146, 182
BslFI GGGAC 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 3 cut(s) 16, 146, 182
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 3 cut(s) 116, 293, 424
BspANI GGCC 3 cut(s) 16, 146, 182
BspCNI CTCAG 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 113, 371
BsrBI CCGCTC 1 cut(s) 295
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 147, 366
BssMI GATC 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 149, 367
Bst4CI ACNGT 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 116, 120
BstDEI CTNAG 2 cut(s) 107, 298
BstHHI GCGC 3 cut(s) 6, 124, 467
BstKTI GATC 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 1 cut(s) 35
BstNI CCWGG 2 cut(s) 149, 367
BstNSI RCATGY 2 cut(s) 122, 337
BstPAI GACNNNNGTC 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 147, 365
BstV1I GCAGC 1 cut(s) 233
BsuRI GGCC 3 cut(s) 16, 146, 182
Cac8I GCNNGC 2 cut(s) 116, 120
CfoI GCGC 3 cut(s) 6, 124, 467
Cfr13I GGNCC 2 cut(s) 145, 370
CviAII CATG 2 cut(s) 119, 334
CviJI RGCY 7 cut(s) 16, 114, 146, 182, 210, 224, 302
CviKI_1 RGCY 7 cut(s) 16, 114, 146, 182, 210, 224, 302
DdeI CTNAG 2 cut(s) 107, 298
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 78, 492
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 147, 365
EcoT38I GRGCYC 1 cut(s) 116
FaeI CATG 2 cut(s) 122, 337
FaqI GGGAC 1 cut(s) 383
FatI CATG 2 cut(s) 118, 333
FauI CCCGC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 2 cut(s) 236, 485
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 3 cut(s) 5, 123, 466
GluI GCNGC 1 cut(s) 222
GsuI CTGGAG 2 cut(s) 55, 195
HaeIII GGCC 3 cut(s) 16, 146, 182
HhaI GCGC 3 cut(s) 6, 124, 467
Hin1II CATG 2 cut(s) 122, 337
Hin6I GCGC 3 cut(s) 4, 122, 465
HinP1I GCGC 3 cut(s) 4, 122, 465
HincII GTYRAC 2 cut(s) 198, 331
HindII GTYRAC 2 cut(s) 198, 331
HinfI GANTC 2 cut(s) 400, 497
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 198, 331
Hpy188I TCNGA 3 cut(s) 310, 320, 347
Hpy188III TCNNGA 2 cut(s) 72, 404
Hpy8I GTNNAC 2 cut(s) 198, 331
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 221, 521
HpyF3I CTNAG 2 cut(s) 107, 298
Hsp92II CATG 2 cut(s) 122, 337
HspAI GCGC 3 cut(s) 4, 122, 465
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 508
MaeI CTAG 2 cut(s) 236, 485
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 37
MbiI CCGCTC 1 cut(s) 295
MboI GATC 1 cut(s) 35
MboII GAAGA 2 cut(s) 71, 272
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 3 cut(s) 98, 188, 253
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 3 cut(s) 136, 172, 263
MspR9I CCNGG 2 cut(s) 149, 367
MvaI CCWGG 2 cut(s) 149, 367
NdeII GATC 1 cut(s) 35
NlaIII CATG 2 cut(s) 122, 337
NlaIV GGNNCC 2 cut(s) 113, 371
NsbI TGCGCA 1 cut(s) 123
NspI RCATGY 2 cut(s) 122, 337
PaeI GCATGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PshAI GACNNNNGTC 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 147, 365
PspGI CCWGG 2 cut(s) 147, 365
PspN4I GGNNCC 2 cut(s) 113, 371
PspPI GGNCC 2 cut(s) 145, 370
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 35
Sau96I GGNCC 2 cut(s) 145, 370
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 2 cut(s) 149, 367
SduI GDGCHC 1 cut(s) 116
SetI ASST 4 cut(s) 26, 212, 226, 304
SfaNI GCATC 1 cut(s) 508
SinI GGWCC 1 cut(s) 370
SphI GCATGC 1 cut(s) 122
Sse9I AATT 3 cut(s) 98, 188, 253
SsiI CCGC 3 cut(s) 116, 293, 424
SspMI CTAG 2 cut(s) 236, 485
StyD4I CCNGG 2 cut(s) 147, 365
TaaI ACNGT 1 cut(s) 342
TasI AATT 3 cut(s) 98, 188, 253
TfiI GAWTC 1 cut(s) 400
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 6 cut(s) 105, 243, 399, 407, 464, 471
VpaK11BI GGWCC 1 cut(s) 370
XceI RCATGY 2 cut(s) 122, 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 2 cut(s) 236, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.