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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1725 |
| AarI | CACCTGC | 3 cut(s) | 2621, 6319, 9737 |
| Acc65I | GGTACC | 3 cut(s) | 6695, 8176, 8476 |
| AccB1I | GGYRCC | 4 cut(s) | 6695, 8176, 8476, 11629 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 8186, 9200 |
| AccI | GTMKAC | 6 cut(s) | 57, 2875, 3724, 7746, 8984, 9378 |
| AccII | CGCG | 2 cut(s) | 41, 3003 |
| AccIII | TCCGGA | 3 cut(s) | 2008, 8422, 9403 |
| AcoI | YGGCCR | 1 cut(s) | 9657 |
| AcvI | CACGTG | 1 cut(s) | 2195 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 277, 1802, 5392, 7312, 8186, 8951, 9200 |
| AflII | CTTAAG | 2 cut(s) | 4732, 4933 |
| AflIII | ACRYGT | 5 cut(s) | 556, 2192, 7100, 8911, 11310 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5644 |
| AhlI | ACTAGT | 2 cut(s) | 8330, 10918 |
| AjiI | CACGTC | 1 cut(s) | 9144 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 4589, 4621, 8045, 8077, 8473, 8505 |
| Alw21I | GWGCWC | 9 cut(s) | 2362, 5303, 5363, 8520, 8640, 9015, 9611, 10656, 10821 |
| Alw44I | GTGCAC | 1 cut(s) | 9607 |
| Ama87I | CYCGRG | 3 cut(s) | 7788, 8999, 10259 |
| Aor13HI | TCCGGA | 3 cut(s) | 2008, 8422, 9403 |
| AoxI | GGCC | 8 cut(s) | 368, 1561, 2034, 4746, 9657, 9665, 11746, 11817 |
| ApaI | GGGCCC | 1 cut(s) | 4750 |
| ApaLI | GTGCAC | 1 cut(s) | 9607 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 7088, 7120 |
| AseI | ATTAAT | 1 cut(s) | 6852 |
| Asp718I | GGTACC | 3 cut(s) | 6695, 8176, 8476 |
| AspLEI | GCGC | 2 cut(s) | 7160, 11083 |
| AsuC2I | CCSGG | 1 cut(s) | 8948 |
| AsuII | TTCGAA | 1 cut(s) | 10872 |
| AsuNHI | GCTAGC | 1 cut(s) | 9367 |
| AvaI | CYCGRG | 3 cut(s) | 7788, 8999, 10259 |
| AxyI | CCTNAGG | 3 cut(s) | 6504, 9534, 10269 |
| BaeGI | GKGCMC | 2 cut(s) | 4750, 9611 |
| BamHI | GGATCC | 1 cut(s) | 2005 |
| BanI | GGYRCC | 4 cut(s) | 6695, 8176, 8476, 11629 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2406, 2438, 8049, 8081 |
| BbrPI | CACGTG | 1 cut(s) | 2195 |
| Bbv12I | GWGCWC | 9 cut(s) | 2362, 5303, 5363, 8520, 8640, 9015, 9611, 10656, 10821 |
| BceAI | ACGGC | 5 cut(s) | 2049, 2916, 3765, 4443, 11748 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1685, 1719, 10777, 10811, 11394, 11428 |
| BciVI | GTATCC | 5 cut(s) | 3313, 4165, 6160, 6973, 7330 |
| BclI | TGATCA | 9 cut(s) | 550, 7843, 8455, 8773, 8935, 9283, 10048, 10369, 11134 |
| BcnI | CCSGG | 1 cut(s) | 8948 |
| BcuI | ACTAGT | 2 cut(s) | 8330, 10918 |
| BfoI | RGCGCY | 1 cut(s) | 11084 |
| BfrI | CTTAAG | 2 cut(s) | 4732, 4933 |
| BfuI | GTATCC | 5 cut(s) | 3313, 4165, 6160, 6973, 7330 |
| BglII | AGATCT | 4 cut(s) | 1414, 3508, 4360, 9937 |
| BlpI | GCTNAGC | 1 cut(s) | 1263 |
| BmcAI | AGTACT | 1 cut(s) | 2350 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5644 |
| BmeT110I | CYCGRG | 3 cut(s) | 7788, 8999, 10259 |
| BmgBI | CACGTC | 1 cut(s) | 9144 |
| BmtI | GCTAGC | 1 cut(s) | 9371 |
| BoxI | GACNNNNGTC | 1 cut(s) | 11697 |
| Bpu10I | CCTNAGC | 3 cut(s) | 4853, 9564, 12156 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1263 |
| Bpu14I | TTCGAA | 1 cut(s) | 10872 |
| BpuMI | CCSGG | 1 cut(s) | 8948 |
| Bsa29I | ATCGAT | 1 cut(s) | 6848 |
| BsaAI | YACGTR | 1 cut(s) | 2195 |
| BsaBI | GATNNNNATC | 3 cut(s) | 147, 2378, 7845 |
| BsaWI | WCCGGW | 4 cut(s) | 2008, 6964, 8422, 9403 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 39, 69, 2453, 2483, 6396, 6426, 11156, 11186 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 277, 1802, 5392, 7312, 8186, 8951, 9200 |
| Bse118I | RCCGGY | 1 cut(s) | 4997 |
| Bse21I | CCTNAGG | 3 cut(s) | 6504, 9534, 10269 |
| Bse8I | GATNNNNATC | 3 cut(s) | 147, 2378, 7845 |
| BseAI | TCCGGA | 3 cut(s) | 2008, 8422, 9403 |
| BseCI | ATCGAT | 1 cut(s) | 6848 |
| BseJI | GATNNNNATC | 3 cut(s) | 147, 2378, 7845 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 277, 1802, 5392, 7312, 8186, 8951, 9200 |
| BseSI | GKGCMC | 2 cut(s) | 4750, 9611 |
| BseYI | CCCAGC | 1 cut(s) | 5596 |
| Bsh1236I | CGCG | 2 cut(s) | 41, 3003 |
| BshFI | GGCC | 8 cut(s) | 370, 1563, 2036, 4748, 9659, 9667, 11748, 11819 |
| BshNI | GGYRCC | 4 cut(s) | 6695, 8176, 8476, 11629 |
| BshVI | ATCGAT | 1 cut(s) | 6848 |
| BsiHKAI | GWGCWC | 9 cut(s) | 2362, 5303, 5363, 8520, 8640, 9015, 9611, 10656, 10821 |
| BsiHKCI | CYCGRG | 3 cut(s) | 7788, 8999, 10259 |
| BsiSI | CCGG | 6 cut(s) | 2009, 4998, 6965, 8423, 8948, 9404 |
| BslFI | GGGAC | 5 cut(s) | 8329, 8432, 10949, 11366, 11831 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 277, 1802, 5392, 7312, 8186, 8951, 9200 |
| BsmBI | CGTCTC | 8 cut(s) | 1673, 1727, 5954, 6626, 6887, 7236, 9134, 11723 |
| BsmFI | GGGAC | 5 cut(s) | 8329, 8432, 10949, 11366, 11831 |
| BsmI | GAATGC | 5 cut(s) | 1780, 6782, 9686, 11280, 12364 |
| BsnI | GGCC | 8 cut(s) | 370, 1563, 2036, 4748, 9659, 9667, 11748, 11819 |
| BsoBI | CYCGRG | 3 cut(s) | 7788, 8999, 10259 |
| Bsp119I | TTCGAA | 1 cut(s) | 10872 |
| Bsp120I | GGGCCC | 1 cut(s) | 4746 |
| Bsp13I | TCCGGA | 3 cut(s) | 2008, 8422, 9403 |
| Bsp1407I | TGTACA | 8 cut(s) | 193, 601, 2059, 2227, 3328, 4573, 4771, 5351 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1263 |
| Bsp68I | TCGCGA | 1 cut(s) | 41 |
| BspANI | GGCC | 8 cut(s) | 370, 1563, 2036, 4748, 9659, 9667, 11748, 11819 |
| BspDI | ATCGAT | 1 cut(s) | 6848 |
| BspEI | TCCGGA | 3 cut(s) | 2008, 8422, 9403 |
| BspFNI | CGCG | 2 cut(s) | 41, 3003 |
| BspHI | TCATGA | 5 cut(s) | 751, 3460, 4312, 5107, 11623 |
| BspMAI | CTGCAG | 6 cut(s) | 1801, 2290, 5754, 7197, 8875, 12145 |
| BspOI | GCTAGC | 1 cut(s) | 9371 |
| BspQI | GCTCTTC | 5 cut(s) | 1332, 8619, 9810, 10239, 11286 |
| BspT104I | TTCGAA | 1 cut(s) | 10872 |
| BspT107I | GGYRCC | 4 cut(s) | 6695, 8176, 8476, 11629 |
| BspTI | CTTAAG | 2 cut(s) | 4732, 4933 |
| BsrFI | RCCGGY | 1 cut(s) | 4997 |
| BsrGI | TGTACA | 8 cut(s) | 193, 601, 2059, 2227, 3328, 4573, 4771, 5351 |
| BssAI | RCCGGY | 1 cut(s) | 4997 |
| BssNAI | GTATAC | 1 cut(s) | 8985 |
| Bst1107I | GTATAC | 1 cut(s) | 8985 |
| BstAFI | CTTAAG | 2 cut(s) | 4732, 4933 |
| BstAUI | TGTACA | 8 cut(s) | 193, 601, 2059, 2227, 3328, 4573, 4771, 5351 |
| BstBAI | YACGTR | 1 cut(s) | 2195 |
| BstBI | TTCGAA | 1 cut(s) | 10872 |
| BstDSI | CCRYGG | 1 cut(s) | 5079 |
| BstEII | GGTNACC | 5 cut(s) | 3043, 3241, 4093, 5074, 8716 |
| BstFNI | CGCG | 2 cut(s) | 41, 3003 |
| BstH2I | RGCGCY | 1 cut(s) | 11084 |
| BstHHI | GCGC | 2 cut(s) | 7160, 11083 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 11697 |
| BstPI | GGTNACC | 5 cut(s) | 3043, 3241, 4093, 5074, 8716 |
| BstSLI | GKGCMC | 2 cut(s) | 4750, 9611 |
| BstUI | CGCG | 2 cut(s) | 41, 3003 |
| BstX2I | RGATCY | 8 cut(s) | 1414, 2005, 3302, 3508, 4154, 4360, 6248, 9937 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 7576, 8741 |
| BstYI | RGATCY | 8 cut(s) | 1414, 2005, 3302, 3508, 4154, 4360, 6248, 9937 |
| BstZ17I | GTATAC | 1 cut(s) | 8985 |
| Bsu15I | ATCGAT | 1 cut(s) | 6848 |
| Bsu36I | CCTNAGG | 3 cut(s) | 6504, 9534, 10269 |
| BsuI | GTATCC | 5 cut(s) | 3313, 4165, 6160, 6973, 7330 |
| BsuRI | GGCC | 8 cut(s) | 370, 1563, 2036, 4748, 9659, 9667, 11748, 11819 |
| BsuTUI | ATCGAT | 1 cut(s) | 6848 |
| BtgI | CCRYGG | 1 cut(s) | 5079 |
| BtgZI | GCGATG | 1 cut(s) | 4752 |
| BtrI | CACGTC | 1 cut(s) | 9144 |
| BtsI | GCAGTG | 6 cut(s) | 1788, 5952, 7190, 7439, 8789, 10073 |
| BtuMI | TCGCGA | 1 cut(s) | 41 |
| CciI | TCATGA | 5 cut(s) | 751, 3460, 4312, 5107, 11623 |
| CfoI | GCGC | 2 cut(s) | 7160, 11083 |
| Cfr10I | RCCGGY | 1 cut(s) | 4997 |
| ClaI | ATCGAT | 1 cut(s) | 6848 |
| CseI | GACGC | 5 cut(s) | 644, 2504, 8337, 8681, 10798 |
| DraI | TTTAAA | 3 cut(s) | 1302, 4632, 5616 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5644 |
| EaeI | YGGCCR | 1 cut(s) | 9657 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5644 |
| EciI | GGCGGA | 1 cut(s) | 1226 |
| Ecl136II | GAGCTC | 6 cut(s) | 5301, 8518, 8638, 9013, 10654, 10819 |
| Eco147I | AGGCCT | 1 cut(s) | 11819 |
| Eco32I | GATATC | 3 cut(s) | 3205, 4057, 12075 |
| Eco53kI | GAGCTC | 6 cut(s) | 5301, 8518, 8638, 9013, 10654, 10819 |
| Eco72I | CACGTG | 1 cut(s) | 2195 |
| Eco81I | CCTNAGG | 3 cut(s) | 6504, 9534, 10269 |
| Eco88I | CYCGRG | 3 cut(s) | 7788, 8999, 10259 |
| Eco91I | GGTNACC | 5 cut(s) | 3043, 3241, 4093, 5074, 8716 |
| EcoICRI | GAGCTC | 6 cut(s) | 5301, 8518, 8638, 9013, 10654, 10819 |
| EcoO109I | RGGNCCY | 5 cut(s) | 4746, 4747, 5191, 8446, 11959 |
| EcoO65I | GGTNACC | 5 cut(s) | 3043, 3241, 4093, 5074, 8716 |
| EcoRV | GATATC | 3 cut(s) | 3205, 4057, 12075 |
| EcoT22I | ATGCAT | 1 cut(s) | 6782 |
| Esp3I | CGTCTC | 8 cut(s) | 1673, 1727, 5954, 6626, 6887, 7236, 9134, 11723 |
| FaqI | GGGAC | 5 cut(s) | 8329, 8432, 10949, 11366, 11831 |
| FauI | CCCGC | 3 cut(s) | 1795, 1840, 5011 |
| FauNDI | CATATG | 3 cut(s) | 1921, 3583, 4435 |
| FbaI | TGATCA | 9 cut(s) | 550, 7843, 8455, 8773, 8935, 9283, 10048, 10369, 11134 |
| FblI | GTMKAC | 6 cut(s) | 57, 2875, 3724, 7746, 8984, 9378 |
| GlaI | GCGC | 2 cut(s) | 7159, 11082 |
| GsaI | CCCAGC | 1 cut(s) | 5600 |
| HaeII | RGCGCY | 1 cut(s) | 11084 |
| HaeIII | GGCC | 8 cut(s) | 370, 1563, 2036, 4748, 9659, 9667, 11748, 11819 |
| HapII | CCGG | 6 cut(s) | 2009, 4998, 6965, 8423, 8948, 9404 |
| HgaI | GACGC | 5 cut(s) | 644, 2504, 8337, 8681, 10798 |
| HhaI | GCGC | 2 cut(s) | 7160, 11083 |
| Hin6I | GCGC | 2 cut(s) | 7158, 11081 |
| HinP1I | GCGC | 2 cut(s) | 7158, 11081 |
| HincII | GTYRAC | 4 cut(s) | 1879, 9052, 11521, 12055 |
| HindII | GTYRAC | 4 cut(s) | 1879, 9052, 11521, 12055 |
| HindIII | AAGCTT | 8 cut(s) | 64, 693, 735, 5610, 6421, 6767, 9018, 9924 |
| HpaI | GTTAAC | 1 cut(s) | 1879 |
| HpaII | CCGG | 6 cut(s) | 2009, 4998, 6965, 8423, 8948, 9404 |
| Hpy99I | CGWCG | 2 cut(s) | 2680, 10792 |
| HpyCH4IV | ACGT | 8 cut(s) | 2194, 2457, 4764, 7245, 9143, 11005, 11310, 11532 |
| HpySE526I | ACGT | 8 cut(s) | 2194, 2457, 4764, 7245, 9143, 11005, 11310, 11532 |
| HspAI | GCGC | 2 cut(s) | 7158, 11081 |
| Kpn2I | TCCGGA | 3 cut(s) | 2008, 8422, 9403 |
| KpnI | GGTACC | 3 cut(s) | 6699, 8180, 8480 |
| Ksp22I | TGATCA | 9 cut(s) | 550, 7843, 8455, 8773, 8935, 9283, 10048, 10369, 11134 |
| KspAI | GTTAAC | 1 cut(s) | 1879 |
| LguI | GCTCTTC | 5 cut(s) | 1332, 8619, 9810, 10239, 11286 |
| MaeII | ACGT | 8 cut(s) | 2194, 2457, 4764, 7245, 9143, 11005, 11310, 11532 |
| MfeI | CAATTG | 6 cut(s) | 456, 5277, 6135, 8043, 8184, 11427 |
| MflI | RGATCY | 8 cut(s) | 1414, 2005, 3302, 3508, 4154, 4360, 6248, 9937 |
| Mph1103I | ATGCAT | 1 cut(s) | 6782 |
| MroI | TCCGGA | 3 cut(s) | 2008, 8422, 9403 |
| MslI | CAYNNNNRTG | 6 cut(s) | 6395, 8130, 10116, 10677, 10929, 12195 |
| MspA1I | CMGCKG | 7 cut(s) | 1175, 1802, 1916, 2285, 3578, 5996, 9098 |
| MspCI | CTTAAG | 2 cut(s) | 4732, 4933 |
| MspI | CCGG | 6 cut(s) | 2009, 4998, 6965, 8423, 8948, 9404 |
| MunI | CAATTG | 6 cut(s) | 456, 5277, 6135, 8043, 8184, 11427 |
| Mva1269I | GAATGC | 5 cut(s) | 1780, 6782, 9686, 11280, 12364 |
| MvnI | CGCG | 2 cut(s) | 41, 3003 |
| NciI | CCSGG | 1 cut(s) | 8948 |
| NdeI | CATATG | 3 cut(s) | 1921, 3583, 4435 |
| NheI | GCTAGC | 1 cut(s) | 9367 |
| NmeAIII | GCCGAG | 1 cut(s) | 8020 |
| NruI | TCGCGA | 1 cut(s) | 41 |
| NsiI | ATGCAT | 1 cut(s) | 6782 |
| NspV | TTCGAA | 1 cut(s) | 10872 |
| PaeI | GCATGC | 1 cut(s) | 8240 |
| PaeR7I | CTCGAG | 2 cut(s) | 7788, 10259 |
| PagI | TCATGA | 5 cut(s) | 751, 3460, 4312, 5107, 11623 |
| PaqCI | CACCTGC | 3 cut(s) | 2621, 6319, 9737 |
| PceI | AGGCCT | 1 cut(s) | 11819 |
| PciI | ACATGT | 3 cut(s) | 556, 7100, 8911 |
| PciSI | GCTCTTC | 5 cut(s) | 1332, 8619, 9810, 10239, 11286 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 7992, 11529 |
| PctI | GAATGC | 5 cut(s) | 1780, 6782, 9686, 11280, 12364 |
| PflFI | GACNNNGTC | 1 cut(s) | 3041 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 8186, 9200 |
| PfoI | TCCNGGA | 3 cut(s) | 109, 5815, 11955 |
| PmaCI | CACGTG | 1 cut(s) | 2195 |
| PmlI | CACGTG | 1 cut(s) | 2195 |
| Ppu21I | YACGTR | 1 cut(s) | 2195 |
| PpuMI | RGGWCCY | 3 cut(s) | 5191, 8446, 11959 |
| PscI | ACATGT | 3 cut(s) | 556, 7100, 8911 |
| PshAI | GACNNNNGTC | 1 cut(s) | 11697 |
| PshBI | ATTAAT | 1 cut(s) | 6852 |
| PsiI | TTATAA | 1 cut(s) | 1725 |
| Psp124BI | GAGCTC | 6 cut(s) | 5303, 8520, 8640, 9015, 10656, 10821 |
| Psp5II | RGGWCCY | 3 cut(s) | 5191, 8446, 11959 |
| PspCI | CACGTG | 1 cut(s) | 2195 |
| PspEI | GGTNACC | 5 cut(s) | 3043, 3241, 4093, 5074, 8716 |
| PspFI | CCCAGC | 1 cut(s) | 5596 |
| PspOMI | GGGCCC | 1 cut(s) | 4746 |
| PspPPI | RGGWCCY | 3 cut(s) | 5191, 8446, 11959 |
| PspXI | VCTCGAGB | 1 cut(s) | 10259 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1074, 1106 |
| PstI | CTGCAG | 6 cut(s) | 1801, 2290, 5754, 7197, 8875, 12145 |
| PsuI | RGATCY | 8 cut(s) | 1414, 2005, 3302, 3508, 4154, 4360, 6248, 9937 |
| PsyI | GACNNNGTC | 1 cut(s) | 3041 |
| PvuII | CAGCTG | 6 cut(s) | 1175, 1916, 2285, 3578, 5996, 9098 |
| RruI | TCGCGA | 1 cut(s) | 41 |
| RseI | CAYNNNNRTG | 6 cut(s) | 6395, 8130, 10116, 10677, 10929, 12195 |
| SacI | GAGCTC | 6 cut(s) | 5303, 8520, 8640, 9015, 10656, 10821 |
| SapI | GCTCTTC | 5 cut(s) | 1332, 8619, 9810, 10239, 11286 |
| ScaI | AGTACT | 1 cut(s) | 2350 |
| Sfr274I | CTCGAG | 2 cut(s) | 7788, 10259 |
| SfuI | TTCGAA | 1 cut(s) | 10872 |
| SlaI | CTCGAG | 2 cut(s) | 7788, 10259 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 6395, 8130, 10116, 10677, 10929, 12195 |
| SpeI | ACTAGT | 2 cut(s) | 8330, 10918 |
| SphI | GCATGC | 1 cut(s) | 8240 |
| SseBI | AGGCCT | 1 cut(s) | 11819 |
| SspI | AATATT | 1 cut(s) | 11950 |
| SstI | GAGCTC | 6 cut(s) | 5303, 8520, 8640, 9015, 10656, 10821 |
| StuI | AGGCCT | 1 cut(s) | 11819 |
| TaiI | ACGT | 8 cut(s) | 2197, 2460, 4767, 7248, 9146, 11008, 11313, 11535 |
| TauI | GCSGC | 5 cut(s) | 3006, 3009, 3858, 9662, 10772 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3041 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 8186, 9200 |
| Vha464I | CTTAAG | 2 cut(s) | 4732, 4933 |
| VneI | GTGCAC | 1 cut(s) | 9607 |
| VspI | ATTAAT | 1 cut(s) | 6852 |
| XbaI | TCTAGA | 3 cut(s) | 8362, 9940, 12290 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 136 |
| XhoI | CTCGAG | 2 cut(s) | 7788, 10259 |
| XmiI | GTMKAC | 6 cut(s) | 57, 2875, 3724, 7746, 8984, 9378 |
| ZrmI | AGTACT | 1 cut(s) | 2350 |
| Zsp2I | ATGCAT | 1 cut(s) | 6782 |