Rw6G002440
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001371
Physical Location & Seq
Reverse (-)
3968216 .. 3976121
7906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002440.1

Sequence Viewer

Length: 735 bp
ATGAACAATACTGTGATTAAGAATCTTAGAGGAAATTTAAACCGTCTAAAAGTGTATCAGACAATGATCCTCATCACCTACCAAATAAAGAAATCATTTGATTACCGTTACACAATACTTTCCAAAGAGGCCTTGGCAAAGAAACAATCCACCAAAACTAGAGAGGCCGTTGAATTATTGTCAACAGGAAAGAGCTATATTGGTGCAGCTAATGAAAGACTAGACAATGTGTTCGGCAATCTCACCAATCAGCGAGGAATGGTTCTTCCTTTTGAACCGCTCTCAGCTACATCTGATAAAATCAGATATGCTGTTGACATGCCACAGAATTTGTTAAAATTATGCACTCCTTATACACCAAAGAGAAAGAGATTAATAATCATATGCCAACGATCAAGCCACAGCTATATTGATGGGAAAGCAAGCGCAGAACAACTATTCAGAAGCAGCTGTCAAGACTTGGTCAACAAAAGATCATATCCAACAAGTGAACTCATAGTCAAAGGTATCTTCCCAGACGTACAACCCTTTGGACCGCCACTGCAAAAAGAGCCAACCACTGCAACACCAAACCATATCCTGTTTCCGATAGAAAAAGAGCCATTCAAACAAGCAGAAGAGAATTATATATTCACCTCTGAATCGAACAAAAAAGCCAAGAGGCAAAGTAAACATGGAACGGCAACATCATCATTAGGAACTAAAGCACAGCCTCGCAAGCAGAAAAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

244

Amino Acids

27.72

Weight (kDa)

9.87

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 280
AciI CCGC 2 cut(s) 278, 536
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 2 cut(s) 34, 328
AfaI GTAC 1 cut(s) 522
AgsI TTSAA 3 cut(s) 173, 275, 607
AluBI AGCT 5 cut(s) 195, 209, 287, 405, 450
AluI AGCT 5 cut(s) 195, 209, 287, 405, 450
AlwI GGATC 1 cut(s) 61
AoxI GGCC 2 cut(s) 129, 165
ApeKI GCWGC 2 cut(s) 206, 447
ApoI RAATTY 2 cut(s) 34, 328
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AseI ATTAAT 1 cut(s) 374
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 533
AsuHPI GGTGA 3 cut(s) 67, 235, 625
AvaII GGWCC 1 cut(s) 533
BbvI GCAGC 2 cut(s) 218, 459
BccI CCATC 1 cut(s) 407
BceAI ACGGC 2 cut(s) 152, 696
BfaI CTAG 2 cut(s) 159, 221
BisI GCNGC 2 cut(s) 207, 448
BlsI GCNGC 2 cut(s) 208, 449
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 71
BseMII CTCAG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 218, 459
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 2 cut(s) 131, 167
BsnI GGCC 2 cut(s) 131, 167
Bsp143I GATC 3 cut(s) 66, 392, 473
BspACI CCGC 2 cut(s) 278, 536
BspANI GGCC 2 cut(s) 131, 167
BspCNI CTCAG 1 cut(s) 296
BspPI GGATC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 66, 392, 473
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 13, 44, 107
Bst6I CTCTTC 1 cut(s) 612
BstC8I GCNNGC 2 cut(s) 424, 719
BstDEI CTNAG 2 cut(s) 26, 283
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 3 cut(s) 69, 395, 476
BstMBI GATC 3 cut(s) 66, 392, 473
BstMWI GCNNNNNNNGC 2 cut(s) 550, 718
BstNSI RCATGY 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 218, 459
BsuRI GGCC 2 cut(s) 131, 167
BtsI GCAGTG 2 cut(s) 539, 558
BtsIMutI CAGTG 2 cut(s) 539, 558
Cac8I GCNNGC 2 cut(s) 424, 719
CfoI GCGC 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 533
Csp6I GTAC 1 cut(s) 521
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 2 cut(s) 319, 674
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 2 cut(s) 26, 283
DpnI GATC 3 cut(s) 68, 394, 475
DpnII GATC 3 cut(s) 66, 392, 473
DraI TTTAAA 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 322, 677
FatI CATG 2 cut(s) 318, 673
FauNDI CATATG 1 cut(s) 383
Fnu4HI GCNGC 2 cut(s) 207, 448
Fsp4HI GCNGC 2 cut(s) 207, 448
FspBI CTAG 2 cut(s) 159, 221
GlaI GCGC 1 cut(s) 427
GluI GCNGC 2 cut(s) 207, 448
HaeIII GGCC 2 cut(s) 131, 167
HhaI GCGC 1 cut(s) 428
Hin1II CATG 2 cut(s) 322, 677
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HincII GTYRAC 3 cut(s) 183, 316, 466
HindII GTYRAC 3 cut(s) 183, 316, 466
HinfI GANTC 2 cut(s) 22, 641
HphI GGTGA 3 cut(s) 67, 235, 625
Hpy166II GTNNAC 5 cut(s) 183, 316, 466, 491, 671
Hpy188I TCNGA 6 cut(s) 60, 295, 305, 443, 588, 640
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 5 cut(s) 183, 316, 466, 491, 671
HpyCH4III ACNGT 3 cut(s) 13, 44, 107
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 4 cut(s) 206, 345, 544, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 718
HpyF3I CTNAG 2 cut(s) 26, 283
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 2 cut(s) 322, 677
HspAI GCGC 1 cut(s) 426
Kzo9I GATC 3 cut(s) 66, 392, 473
LpnPI CCDG 3 cut(s) 171, 528, 593
Lsp1109I GCAGC 2 cut(s) 218, 459
MaeI CTAG 2 cut(s) 159, 221
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 107
MalI GATC 3 cut(s) 68, 394, 475
MbiI CCGCTC 1 cut(s) 280
MboI GATC 3 cut(s) 66, 392, 473
MboII GAAGA 3 cut(s) 257, 502, 629
MluCI AATT 5 cut(s) 34, 173, 328, 338, 622
MmeI TCCRAC 1 cut(s) 506
MnlI CCTC 8 cut(s) 23, 80, 121, 157, 248, 646, 654, 723
MseI TTAA 4 cut(s) 18, 38, 335, 374
MspA1I CMGCKG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 550, 718
NdeI CATATG 1 cut(s) 383
NdeII GATC 3 cut(s) 66, 392, 473
NlaIII CATG 2 cut(s) 322, 677
NspI RCATGY 1 cut(s) 322
PceI AGGCCT 1 cut(s) 131
PfeI GAWTC 2 cut(s) 22, 641
PflFI GACNNNGTC 1 cut(s) 461
PkrI GCNGC 2 cut(s) 208, 449
PshBI ATTAAT 1 cut(s) 374
PspPI GGNCC 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 450
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
SaqAI TTAA 4 cut(s) 18, 38, 335, 374
SatI GCNGC 2 cut(s) 207, 448
Sau3AI GATC 3 cut(s) 66, 392, 473
Sau96I GGNCC 1 cut(s) 533
SetI ASST 9 cut(s) 80, 197, 211, 289, 407, 452, 508, 522, 638
SinI GGWCC 1 cut(s) 533
Sse9I AATT 5 cut(s) 34, 173, 328, 338, 622
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 2 cut(s) 278, 536
SspMI CTAG 2 cut(s) 159, 221
StuI AGGCCT 1 cut(s) 131
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 13, 44, 107
TaiI ACGT 1 cut(s) 522
TaqI TCGA 1 cut(s) 644
TasI AATT 5 cut(s) 34, 173, 328, 338, 622
TfiI GAWTC 2 cut(s) 22, 641
Tru1I TTAA 4 cut(s) 18, 38, 335, 374
Tru9I TTAA 4 cut(s) 18, 38, 335, 374
TscAI CASTG 2 cut(s) 546, 565
TseI GCWGC 2 cut(s) 206, 447
TspDTI ATGAA 2 cut(s) 17, 228
TspRI CASTG 2 cut(s) 546, 565
Tth111I GACNNNGTC 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 533
VspI ATTAAT 1 cut(s) 374
XapI RAATTY 2 cut(s) 34, 328
XceI RCATGY 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 2 cut(s) 159, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.