Rorug02G0562000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001371
Physical Location & Seq
Reverse (-)
68741727 .. 68747191
5465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0562000.1

Sequence Viewer

Length: 1344 bp
ATGTATACAGCAGCTATAGGGCCATCATCAAAATTGATGAATACCAACATTGGTGATCTTCCCGAGGCGGTATTGGTTGAAATCCTTGGCCGACTTCCTTGCTATAAATACATTGCTCAATGCAAGCGTGTGTCCAAGCATTGGTGCACCGTCATGTCTGATCCTTCTTTTATTGGCCGATTTCTGTGTCTCCAAAGTGATGGTAAGCAAATATTCATGACCCGTACTTTGATAAACTTCCGAGGGGAGGAATTCCTTACTAGGATGTCATCGTCCTTTAAGCCGTTAACTCCTTTGTTCAAAACACTCATGAATTTCCACCATTTGAAAGAAGAGCCAGTTGTGGTAGGTACTTATAACGACTTGGTTTTGTGCTGTGCGAGCCGGTATCATCAACGTGATTACTACATCTGCAATCCATACACATTGAAATGGGTTCCTCTTCCTCCCCCTCCTCAAGTCTTTAAGTTCACAGGAGTGGGATTCTTGTGTGACCTTCCCTACTATAACTGTAAGAAAAACGATCTGGGAGGAAATGACATCCAGCTTAATGCTGATTATAGGTGCAGAATTGTGAGACTTGTCTATCATCCTGATGAGATGCGTATACCTTCGTGTGAATTCAAAGTGCAGATCTTCTATTCTGAGACAGGTGTTTGGAGAGAGTCAATTGTATCATCTCCATCAATGTTTCATTTGGATCGGGTCAATTCAGGCATTAGTTTTGCTCACAATGGAATGCTGTATTGGATGAGTTATAGTGGCAAATTCCTTATTGGATTGAATCCGTTCATGATGGATAACAGGAACAGTAATAGCATGTCTAGTACTAGCAGCAGTGCGGATGATGGTGATGATAGTGATCACTATGAATGTCGTTTCATTGAAGTTGATGGGTCTGACGATATTATACTTAGATGCGTAGGTGTCTATAAAGGGTGTCTGCAGATGGGCGACTATGACTATGATAGCCATGCTGTTTTTTTCTGGGAGTTGAATGAAGAAGTCCACAGTGGAGCTGGAAAATCATGTTTAGAACTCAGGAAGAGGGTTTATTCACTGGACTGGGAAATGGTCCCAGATGATATTTATGATCTGAATATTCTGTCTTTCGACCCCAATAACGACGGTACTGAAGGTATCCTGTATCTGTATGTAAGTGGAGATGATGATACGCATGGAGACATTTTCATGTGCAACATTTGTACAGGAAAGTCTTTGAAGATATTTGAAAATCATCCGAGGGTTTATGAGTACTTCCCAGTTGCGGTCCCGTGGTGGCCGACAACAGTCCCTAGGCCACCAGAACGTGAAGCAAATGCTCTTATTCCCAGCTCGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

447

Amino Acids

51.25

Weight (kDa)

5.33

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 57 3.5e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 141
AccI GTMKAC 2 cut(s) 5, 607
AciI CCGC 3 cut(s) 68, 842, 1268
AclWI GGATC 2 cut(s) 155, 708
AcoI YGGCCR 3 cut(s) 88, 175, 1280
AcsI RAATTY 4 cut(s) 251, 313, 620, 767
AcuI CTGAAG 1 cut(s) 1155
AfaI GTAC 6 cut(s) 226, 352, 829, 1132, 1207, 1256
AfiI CCNNNNNNNGG 3 cut(s) 141, 247, 1267
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
AleI CACNNNNGTG 1 cut(s) 476
AluBI AGCT 4 cut(s) 14, 547, 1019, 1335
AluI AGCT 4 cut(s) 14, 547, 1019, 1335
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 4 cut(s) 194, 571, 641, 1176
Alw44I GTGCAC 1 cut(s) 145
AlwI GGATC 2 cut(s) 155, 708
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 5 cut(s) 20, 88, 175, 1280, 1298
ApaLI GTGCAC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 11, 834
ApoI RAATTY 4 cut(s) 251, 313, 620, 767
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 788
AspA2I CCTAGG 1 cut(s) 1295
AspS9I GGNCC 3 cut(s) 20, 1075, 1270
AsuHPI GGTGA 2 cut(s) 65, 863
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 2 cut(s) 1075, 1270
AvrII CCTAGG 1 cut(s) 1295
BaeGI GKGCMC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 23, 846
BccI CCATC 7 cut(s) 31, 194, 691, 790, 842, 887, 943
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciVI GTATCC 1 cut(s) 1151
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 4 cut(s) 194, 571, 641, 1176
BfaI CTAG 5 cut(s) 261, 825, 831, 1296, 1342
BfmI CTRYAG 2 cut(s) 15, 944
BfuI GTATCC 1 cut(s) 1151
BglII AGATCT 1 cut(s) 633
BisI GCNGC 2 cut(s) 12, 835
BlnI CCTAGG 1 cut(s) 1295
BlsI GCNGC 2 cut(s) 13, 836
BmcAI AGTACT 2 cut(s) 829, 1256
Bme18I GGWCC 2 cut(s) 1075, 1270
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 3 cut(s) 20, 1075, 1270
BmiI GGNNCC 3 cut(s) 438, 1077, 1272
BmrI ACTGGG 2 cut(s) 1075, 1256
BmsI GCATC 2 cut(s) 591, 908
BmuI ACTGGG 2 cut(s) 1075, 1256
BoxI GACNNNNGTC 1 cut(s) 1289
BpuEI CTTGAG 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 861
BsaJI CCNNGG 6 cut(s) 63, 85, 241, 1241, 1274, 1295
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 247, 1267
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 4 cut(s) 338, 1065, 1070, 1262
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 861
BseDI CCNNGG 6 cut(s) 63, 85, 241, 1241, 1274, 1295
BseGI GGATG 6 cut(s) 270, 540, 589, 756, 850, 1237
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 3 cut(s) 141, 247, 1267
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 636, 1054
BseNI ACTGG 4 cut(s) 338, 1065, 1070, 1262
BseRI GAGGAG 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 2 cut(s) 23, 846
BseYI CCCAGC 1 cut(s) 1331
BsgI GTGCAG 2 cut(s) 586, 650
BshFI GGCC 5 cut(s) 22, 90, 177, 1282, 1300
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 385
BslFI GGGAC 3 cut(s) 1061, 1256, 1277
BslI CCNNNNNNNGG 3 cut(s) 141, 247, 1267
BsmAI GTCTC 4 cut(s) 194, 571, 641, 1176
BsmFI GGGAC 3 cut(s) 1061, 1256, 1277
BsmI GAATGC 1 cut(s) 744
BsnI GGCC 5 cut(s) 22, 90, 177, 1282, 1300
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 1205
Bsp143I GATC 7 cut(s) 55, 160, 523, 633, 700, 862, 1093
BspACI CCGC 3 cut(s) 68, 842, 1268
BspANI GGCC 5 cut(s) 22, 90, 177, 1282, 1300
BspCNI CTCAG 2 cut(s) 637, 1053
BspHI TCATGA 3 cut(s) 216, 309, 792
BspLI GGNNCC 3 cut(s) 438, 1077, 1272
BspMAI CTGCAG 1 cut(s) 948
BspPI GGATC 2 cut(s) 155, 708
BspQI GCTCTTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 1205
BsrI ACTGG 4 cut(s) 338, 1065, 1070, 1262
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 6 cut(s) 63, 85, 241, 1241, 1274, 1295
BssMI GATC 7 cut(s) 55, 160, 523, 633, 700, 862, 1093
BssNAI GTATAC 2 cut(s) 6, 608
BssT1I CCWWGG 2 cut(s) 85, 1295
Bst1107I GTATAC 2 cut(s) 6, 608
Bst4CI ACNGT 6 cut(s) 151, 512, 812, 1013, 1130, 1291
Bst6I CTCTTC 3 cut(s) 327, 447, 1040
BstAUI TGTACA 1 cut(s) 1205
BstC8I GCNNGC 3 cut(s) 125, 382, 1337
BstDEI CTNAG 3 cut(s) 645, 914, 1040
BstDSI CCRYGG 1 cut(s) 1274
BstF5I GGATG 6 cut(s) 270, 540, 589, 756, 850, 1237
BstKTI GATC 7 cut(s) 58, 163, 526, 636, 703, 865, 1096
BstMAI GTCTC 4 cut(s) 194, 571, 641, 1176
BstMBI GATC 7 cut(s) 55, 160, 523, 633, 700, 862, 1093
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 823
BstPAI GACNNNNGTC 1 cut(s) 1289
BstSFI CTRYAG 2 cut(s) 15, 944
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 23, 846
BstX2I RGATCY 1 cut(s) 633
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 1 cut(s) 633
BstZ17I GTATAC 2 cut(s) 6, 608
BsuI GTATCC 1 cut(s) 1151
BsuRI GGCC 5 cut(s) 22, 90, 177, 1282, 1300
BtgI CCRYGG 1 cut(s) 1274
BtsCI GGATG 6 cut(s) 270, 540, 589, 756, 850, 1237
BtsI GCAGTG 1 cut(s) 844
BtsIMutI CAGTG 3 cut(s) 844, 1018, 1058
Cac8I GCNNGC 3 cut(s) 125, 382, 1337
CciI TCATGA 3 cut(s) 216, 309, 792
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 3 cut(s) 20, 1075, 1270
Csp6I GTAC 6 cut(s) 225, 351, 828, 1131, 1206, 1255
CviAII CATG 9 cut(s) 154, 217, 310, 793, 820, 974, 1029, 1178, 1192
CviQI GTAC 6 cut(s) 225, 351, 828, 1131, 1206, 1255
DdeI CTNAG 3 cut(s) 645, 914, 1040
DpnI GATC 7 cut(s) 57, 162, 525, 635, 702, 864, 1095
DpnII GATC 7 cut(s) 55, 160, 523, 633, 700, 862, 1093
EaeI YGGCCR 3 cut(s) 88, 175, 1280
Eam1104I CTCTTC 3 cut(s) 327, 447, 1040
EarI CTCTTC 3 cut(s) 327, 447, 1040
Eco130I CCWWGG 2 cut(s) 85, 1295
Eco47I GGWCC 2 cut(s) 1075, 1270
Eco57I CTGAAG 1 cut(s) 1155
Eco88I CYCGRG 1 cut(s) 62
EcoRI GAATTC 2 cut(s) 251, 620
EcoT14I CCWWGG 2 cut(s) 85, 1295
ErhI CCWWGG 2 cut(s) 85, 1295
FaeI CATG 9 cut(s) 157, 220, 313, 796, 823, 977, 1032, 1181, 1195
FaqI GGGAC 3 cut(s) 1061, 1256, 1277
FatI CATG 9 cut(s) 153, 216, 309, 792, 819, 973, 1028, 1177, 1191
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 2 cut(s) 5, 607
Fnu4HI GCNGC 2 cut(s) 12, 835
FokI GGATG 6 cut(s) 277, 527, 576, 763, 857, 1224
Fsp4HI GCNGC 2 cut(s) 12, 835
FspBI CTAG 5 cut(s) 261, 825, 831, 1296, 1342
GluI GCNGC 2 cut(s) 12, 835
GsaI CCCAGC 1 cut(s) 1335
HaeIII GGCC 5 cut(s) 22, 90, 177, 1282, 1300
HapII CCGG 1 cut(s) 385
Hin1II CATG 9 cut(s) 157, 220, 313, 796, 823, 977, 1032, 1181, 1195
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 3 cut(s) 483, 665, 784
HpaI GTTAAC 1 cut(s) 288
HpaII CCGG 1 cut(s) 385
HphI GGTGA 2 cut(s) 65, 863
Hpy166II GTNNAC 6 cut(s) 6, 147, 288, 471, 608, 1009
Hpy188I TCNGA 6 cut(s) 160, 242, 646, 901, 1098, 1242
Hpy188III TCNNGA 6 cut(s) 62, 217, 310, 593, 793, 1042
Hpy8I GTNNAC 6 cut(s) 6, 147, 288, 471, 608, 1009
Hpy99I CGWCG 1 cut(s) 1130
HpyAV CCTTC 4 cut(s) 174, 506, 621, 1130
HpyCH4III ACNGT 6 cut(s) 151, 512, 812, 1013, 1130, 1291
HpyCH4IV ACGT 2 cut(s) 397, 1309
HpyCH4V TGCA 7 cut(s) 123, 147, 414, 567, 631, 946, 1197
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 3 cut(s) 645, 914, 1040
HpySE526I ACGT 2 cut(s) 397, 1309
Hsp92II CATG 9 cut(s) 157, 220, 313, 796, 823, 977, 1032, 1181, 1195
Ksp22I TGATCA 1 cut(s) 862
KspAI GTTAAC 1 cut(s) 288
Kzo9I GATC 7 cut(s) 55, 160, 523, 633, 700, 862, 1093
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 1016
Lsp1109I GCAGC 2 cut(s) 23, 846
LweI GCATC 2 cut(s) 591, 908
MaeI CTAG 5 cut(s) 261, 825, 831, 1296, 1342
MaeII ACGT 2 cut(s) 397, 1309
MaeIII GTNAC 1 cut(s) 491
MalI GATC 7 cut(s) 57, 162, 525, 635, 702, 864, 1095
MboI GATC 7 cut(s) 55, 160, 523, 633, 700, 862, 1093
MboII GAAGA 7 cut(s) 50, 344, 434, 628, 1013, 1057, 1234
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 8 cut(s) 32, 251, 313, 570, 620, 669, 709, 767
MlyI GAGTC 1 cut(s) 674
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 4 cut(s) 279, 287, 465, 549
MslI CAYNNNNRTG 6 cut(s) 152, 396, 430, 476, 594, 1190
MspI CCGG 1 cut(s) 385
MunI CAATTG 1 cut(s) 669
Mva1269I GAATGC 1 cut(s) 744
MwoI GCNNNNNNNGC 1 cut(s) 381
NdeII GATC 7 cut(s) 55, 160, 523, 633, 700, 862, 1093
NlaIII CATG 9 cut(s) 157, 220, 313, 796, 823, 977, 1032, 1181, 1195
NlaIV GGNNCC 3 cut(s) 438, 1077, 1272
NmuCI GTSAC 1 cut(s) 491
NspI RCATGY 1 cut(s) 823
OliI CACNNNNGTG 1 cut(s) 476
PagI TCATGA 3 cut(s) 216, 309, 792
PciSI GCTCTTC 1 cut(s) 327
PctI GAATGC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 2 cut(s) 483, 784
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 13, 836
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
PshAI GACNNNNGTC 1 cut(s) 1289
PsiI TTATAA 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 1331
PspN4I GGNNCC 3 cut(s) 438, 1077, 1272
PspPI GGNCC 3 cut(s) 20, 1075, 1270
PstI CTGCAG 1 cut(s) 948
PsuI RGATCY 1 cut(s) 633
RsaI GTAC 6 cut(s) 226, 352, 829, 1132, 1207, 1256
RsaNI GTAC 6 cut(s) 225, 351, 828, 1131, 1206, 1255
RseI CAYNNNNRTG 6 cut(s) 152, 396, 430, 476, 594, 1190
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 4 cut(s) 279, 287, 465, 549
SatI GCNGC 2 cut(s) 12, 835
Sau3AI GATC 7 cut(s) 55, 160, 523, 633, 700, 862, 1093
Sau96I GGNCC 3 cut(s) 20, 1075, 1270
ScaI AGTACT 2 cut(s) 829, 1256
SchI GAGTC 1 cut(s) 674
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 2 cut(s) 591, 908
SfcI CTRYAG 2 cut(s) 15, 944
SinI GGWCC 2 cut(s) 1075, 1270
SmiMI CAYNNNNRTG 6 cut(s) 152, 396, 430, 476, 594, 1190
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 8 cut(s) 32, 251, 313, 570, 620, 669, 709, 767
SsiI CCGC 3 cut(s) 68, 842, 1268
SspI AATATT 2 cut(s) 213, 1102
SspMI CTAG 5 cut(s) 261, 825, 831, 1296, 1342
StyI CCWWGG 2 cut(s) 85, 1295
TaaI ACNGT 6 cut(s) 151, 512, 812, 1013, 1130, 1291
TaiI ACGT 2 cut(s) 400, 1312
TaqI TCGA 1 cut(s) 1113
TasI AATT 8 cut(s) 32, 251, 313, 570, 620, 669, 709, 767
TatI WGTACW 3 cut(s) 827, 1205, 1254
TfiI GAWTC 2 cut(s) 483, 784
Tru1I TTAA 4 cut(s) 279, 287, 465, 549
Tru9I TTAA 4 cut(s) 279, 287, 465, 549
TscAI CASTG 3 cut(s) 844, 1018, 1065
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 2 cut(s) 11, 834
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 9 cut(s) 53, 205, 326, 683, 781, 871, 885, 1014, 1180
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 3 cut(s) 844, 1018, 1065
Van91I CCANNNNNTGG 1 cut(s) 141
VneI GTGCAC 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 1075, 1270
XapI RAATTY 4 cut(s) 251, 313, 620, 767
XceI RCATGY 1 cut(s) 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
XmaJI CCTAGG 1 cut(s) 1295
XmiI GTMKAC 2 cut(s) 5, 607
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 5 cut(s) 261, 825, 831, 1296, 1342
ZrmI AGTACT 2 cut(s) 829, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.