RchiOBHm_Chr6g0244431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003902
Physical Location & Seq
Forward (+)
502753 .. 507876
5124 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21907

Sequence Viewer

Length: 654 bp
ATGAGCTCCAATAAAACTCCGGTTGGGTTTAGGGTTTTGGGGCAGCGTCCACTTTCTTCATCATTTTCTTCTCGCTGTCAAATCCCTGTCAAGGTCGCAGACGATGACATTTCAGAACAGAGGCTGAAGCACAATTCTGGAACACCCAAGACAGTTAAGGTGAAGTCGCGGCCATTCTCGTCGTTATTGGATCTGAAAGATCTAAGTGGGTCCACTGATGAGCAAATTGAGGCCAAGAAAGGAGGGGAAGCAGAGAAGAGTTCTGTAGCATTGGCATTTGAAAAATTTAAGCACACTGATATAGGAAAATGGCAATCTAAAGTTTCACAAATTGCTGGTGAAGTAGAATGTCCTGACAAAGAAGATTTACCAGAATCAAGAAAAAGGAGACACCCTTGTAAAGATGGGGATGACAAACACACTGCGAGAAAGTATTTTGCAGTTCTTGGAGGTGATCAAAAACCCAAGCTAAAAAAGAGAAGGGCTGAGAGTCTCATAATCCAAGAGAAACCGGGACATGTTTATGATCACTATGAAAATGGTTGTGGCTGGTGGGACTGCAATATGGAGGGTATTGACAATGAAGAAGTTGGTGTCCATGAGGTGTGGGAAGGAGTGGGCTCAACCACATTGGGAGGAATAGAGTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.25

Weight (kDa)

7.08

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 170
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 1 cut(s) 281
AluBI AGCT 2 cut(s) 6, 469
AluI AGCT 2 cut(s) 6, 469
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 382, 497
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 2 cut(s) 170, 231
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 3 cut(s) 172, 350, 464
AvaII GGWCC 1 cut(s) 210
BanII GRGCYC 2 cut(s) 8, 623
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 398
BclI TGATCA 2 cut(s) 454, 526
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 2 cut(s) 382, 497
BfmI CTRYAG 1 cut(s) 264
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 44, 170
BlsI GCNGC 2 cut(s) 45, 171
Bme1390I CCNGG 1 cut(s) 513
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 513
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 477
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 172, 233
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 20, 512
BslFI GGGAC 2 cut(s) 528, 569
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 382, 497
BsmFI GGGAC 2 cut(s) 528, 569
BsnI GGCC 2 cut(s) 172, 233
Bsp1286I GDGCHC 2 cut(s) 8, 623
Bsp143I GATC 4 cut(s) 190, 199, 454, 526
BspACI CCGC 1 cut(s) 169
BspANI GGCC 2 cut(s) 172, 233
BspCNI CTCAG 1 cut(s) 478
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 198
BssMI GATC 4 cut(s) 190, 199, 454, 526
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 203, 486
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 4 cut(s) 193, 202, 457, 529
BstMAI GTCTC 2 cut(s) 382, 497
BstMBI GATC 4 cut(s) 190, 199, 454, 526
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 511
BstSFI CTRYAG 1 cut(s) 264
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 190, 199
BstYI RGATCY 2 cut(s) 190, 199
BsuRI GGCC 2 cut(s) 172, 233
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 213, 294, 420
CaiI CAGNNNCTG 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 1 cut(s) 35
CviAII CATG 2 cut(s) 518, 599
CviJI RGCY 8 cut(s) 6, 124, 172, 233, 469, 485, 549, 621
CviKI_1 RGCY 8 cut(s) 6, 124, 172, 233, 469, 485, 549, 621
DdeI CTNAG 2 cut(s) 203, 486
DpnI GATC 4 cut(s) 192, 201, 456, 528
DpnII GATC 4 cut(s) 190, 199, 454, 526
EaeI YGGCCR 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 8, 623
Eco47I GGWCC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 8, 623
FaeI CATG 2 cut(s) 521, 602
FaiI YATR 7 cut(s) 302, 497, 519, 525, 534, 566, 600
FaqI GGGAC 2 cut(s) 528, 569
FatI CATG 2 cut(s) 517, 598
FbaI TGATCA 2 cut(s) 454, 526
Fnu4HI GCNGC 2 cut(s) 44, 170
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 2 cut(s) 8, 623
Fsp4HI GCNGC 2 cut(s) 44, 170
GluI GCNGC 2 cut(s) 44, 170
HaeIII GGCC 2 cut(s) 172, 233
HapII CCGG 2 cut(s) 20, 512
HgaI GACGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 521, 602
HinfI GANTC 2 cut(s) 374, 490
HpaII CCGG 2 cut(s) 20, 512
HphI GGTGA 3 cut(s) 172, 350, 464
Hpy166II GTNNAC 2 cut(s) 50, 213
Hpy188I TCNGA 2 cut(s) 115, 195
Hpy188III TCNNGA 3 cut(s) 138, 353, 378
Hpy8I GTNNAC 2 cut(s) 50, 213
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 474, 605
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 440, 561
HpyF3I CTNAG 2 cut(s) 203, 486
Hsp92II CATG 2 cut(s) 521, 602
Ksp22I TGATCA 2 cut(s) 454, 526
Kzo9I GATC 4 cut(s) 190, 199, 454, 526
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 8 cut(s) 33, 99, 123, 321, 366, 384, 525, 535
Lsp1109I GCAGC 1 cut(s) 55
MalI GATC 4 cut(s) 192, 201, 456, 528
MboI GATC 4 cut(s) 190, 199, 454, 526
MboII GAAGA 5 cut(s) 48, 60, 268, 374, 596
MflI RGATCY 2 cut(s) 190, 199
MhlI GDGCHC 2 cut(s) 8, 623
MluCI AATT 4 cut(s) 133, 225, 284, 330
MlyI GAGTC 1 cut(s) 499
MnlI CCTC 7 cut(s) 114, 223, 236, 443, 562, 595, 629
MseI TTAA 2 cut(s) 156, 288
MslI CAYNNNNRTG 1 cut(s) 522
MspI CCGG 2 cut(s) 20, 512
MspR9I CCNGG 1 cut(s) 513
MvnI CGCG 1 cut(s) 169
NciI CCSGG 1 cut(s) 513
NdeII GATC 4 cut(s) 190, 199, 454, 526
NlaIII CATG 2 cut(s) 521, 602
NlaIV GGNNCC 1 cut(s) 211
NspI RCATGY 1 cut(s) 521
PciI ACATGT 1 cut(s) 517
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 45, 171
PleI GAGTC 1 cut(s) 498
PpsI GAGTC 1 cut(s) 498
PscI ACATGT 1 cut(s) 517
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 190, 199
RseI CAYNNNNRTG 1 cut(s) 522
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 156, 288
SatI GCNGC 2 cut(s) 44, 170
Sau3AI GATC 4 cut(s) 190, 199, 454, 526
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 1 cut(s) 499
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 2 cut(s) 8, 623
SetI ASST 6 cut(s) 8, 96, 162, 454, 471, 606
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 522
Sse9I AATT 4 cut(s) 133, 225, 284, 330
SsiI CCGC 1 cut(s) 169
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 511
TaaI ACNGT 1 cut(s) 154
TasI AATT 4 cut(s) 133, 225, 284, 330
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 156, 288
Tru9I TTAA 2 cut(s) 156, 288
TscAI CASTG 3 cut(s) 220, 301, 427
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 48, 549, 597
TspRI CASTG 3 cut(s) 220, 301, 427
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.