Rorug05G0508600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003902
Physical Location & Seq
Forward (+)
69181750 .. 69183838
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0508600.1

Sequence Viewer

Length: 1155 bp
ATGTCGTGCTCCGTCGCGATGTCAAACTCGCCGGTATTTTCACCGCCGCCGTCTCTCTACTGCAACAAGACCTCCATGATCTCCTCGGCTCCCGAAACCCTAAACCTATCGCACCTGAAACAACAACCGTCGCAGCAATCTTCGTCTTCGCCGAATTCGGCTCCGCCGTCGCCGTCCCCGTCGTCGCCGTTCAGGCTTCGGATTCCGAAGTCTCTGAGCACGCTATCTGCGGTTCCCGGATCTTCGTCTCCGGTGACGCAATTGAAGAGGAAGCGACCGGCGAAGCTTTGCATTCCGATTGTATCGACTGGATTTGGGGCTGCTCAGGCGACGCCGTCTGCGGCGGCGTGGAGAGAGCTGGTGGAGGAAGATAGAGAAGGGTACTTCTCCGTGTATTGTAAGAAAGGGAGGAGAGAGGCTTTAGAGGATCGGTACTCAGCCACTCTTAATCTTCAAGGTGATCCCAAACAGGCGTTTTTCGGTGTATTTGATGGGCATGGAGGTGCAAAAGCTGCTGAATTTGCAGCTCAGAACTTGGGAAAAAACATTTTAGATGAAGTTGTGAGGAGGGACGATGACGATAAATTTGAGGAATCTGTCAAGCATGGTTACCTGAATACAGATTCTGATTTTCTTAAAGAGGATTTCAGCGGTGGATCATGCTGTGTGACAGCTATGATCAGGAACGGAACCCTTGTTGTGTCCAATGCTGGTGATTGCCGTGCTGTAATGAGCAGAGGAGGTGCTGCAGAGGCTCTCACATCTGATCATCGACCGGCAAGGGAAGATGAAAGGACCAGAATTGAGAACTTGGGTGGCTATGTTGATATGTGCCATGGTACTTGGAGGATTCAGGGTTGTCTAGCTGTATCGAGAGGAATTGGAGATGGGCACCTTAAAAAGTTTGTAACAGCAGAGCCAGAGAGTCGAGTCCTTAGACTCAAAACCGAGCATGAGTTCGTAATCATGGCTTCAGATGGATTATGGGATAAGGTTAGCAACCAAGAAGCAGTGGATATTGTTCGACCTTCATGCTTAGGCATTGATCGACAACAACCCCTTTTGGCGTGTAAAAAGTTGGTAGAACTGTCTGTATCACGAGGCTCGCGCGACGATATTAGTGTGATGGTAGTCCAATTGGGGCGCTACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

41.69

Weight (kDa)

7.97

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 132 - 373 3.1e-60 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 891
AccII CGCG 3 cut(s) 17, 1108, 1110
AciI CCGC 7 cut(s) 44, 47, 164, 230, 341, 344, 651
AclWI GGATC 4 cut(s) 247, 435, 455, 664
AcsI RAATTY 3 cut(s) 154, 518, 584
AcuI CTGAAG 1 cut(s) 957
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 3 cut(s) 383, 434, 841
AgsI TTSAA 2 cut(s) 265, 455
AluBI AGCT 6 cut(s) 286, 358, 512, 527, 674, 866
AluI AGCT 6 cut(s) 286, 358, 512, 527, 674, 866
Alw21I GWGCWC 2 cut(s) 11, 221
Alw26I GTCTC 3 cut(s) 57, 216, 252
AlwI GGATC 4 cut(s) 247, 435, 455, 664
AlwNI CAGNNNCTG 1 cut(s) 626
ApeKI GCWGC 5 cut(s) 133, 320, 512, 524, 746
ApoI RAATTY 3 cut(s) 154, 518, 584
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AspLEI GCGC 2 cut(s) 1110, 1146
AspS9I GGNCC 1 cut(s) 795
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 4 cut(s) 33, 265, 470, 725
AvaII GGWCC 1 cut(s) 795
BaeGI GKGCMC 1 cut(s) 894
BanI GGYRCC 1 cut(s) 891
BauI CACGAG 1 cut(s) 1098
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 11, 221
BbvI GCAGC 5 cut(s) 145, 307, 499, 536, 733
BccI CCATC 4 cut(s) 485, 881, 971, 1120
BceAI ACGGC 6 cut(s) 34, 151, 157, 172, 319, 705
BcgI CGANNNNNNTGC 2 cut(s) 1014, 1048
BclI TGATCA 2 cut(s) 678, 766
BcnI CCSGG 1 cut(s) 237
BcoDI GTCTC 3 cut(s) 57, 216, 252
BfaI CTAG 1 cut(s) 863
BfmI CTRYAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 1147
BglI GCCNNNNNGGC 1 cut(s) 193
BisI GCNGC 8 cut(s) 47, 134, 321, 342, 345, 513, 525, 747
BlsI GCNGC 8 cut(s) 48, 135, 322, 343, 346, 514, 526, 748
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 5 cut(s) 90, 162, 234, 691, 893
BmrFI CCNGG 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 138
Bpu10I CCTNAGC 2 cut(s) 324, 1036
BpuMI CCSGG 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 84, 835
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 3 cut(s) 31, 277, 775
Bse1I ACTGG 1 cut(s) 313
BseDI CCNNGG 2 cut(s) 84, 835
BseMII CTCAG 4 cut(s) 206, 338, 450, 542
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 4 cut(s) 73, 424, 580, 753
BseSI GKGCMC 1 cut(s) 894
BseXI GCAGC 5 cut(s) 145, 307, 499, 536, 733
Bsh1236I CGCG 3 cut(s) 17, 1108, 1110
Bsh1285I CGRYCG 2 cut(s) 278, 776
BshNI GGYRCC 1 cut(s) 891
BsiEI CGRYCG 2 cut(s) 278, 776
BsiHKAI GWGCWC 2 cut(s) 11, 221
BsiSI CCGG 5 cut(s) 32, 237, 251, 278, 776
BslFI GGGAC 2 cut(s) 160, 584
BsmAI GTCTC 3 cut(s) 57, 216, 252
BsmBI CGTCTC 2 cut(s) 57, 252
BsmFI GGGAC 2 cut(s) 160, 584
BsmI GAATGC 1 cut(s) 291
Bsp1286I GDGCHC 3 cut(s) 11, 221, 894
Bsp143I GATC 8 cut(s) 78, 239, 427, 460, 656, 678, 766, 1045
Bsp19I CCATGG 1 cut(s) 835
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 7 cut(s) 44, 47, 164, 230, 341, 344, 651
BspCNI CTCAG 4 cut(s) 207, 337, 449, 541
BspFNI CGCG 3 cut(s) 17, 1108, 1110
BspLI GGNNCC 5 cut(s) 90, 162, 234, 691, 893
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 4 cut(s) 247, 435, 455, 664
BspT107I GGYRCC 1 cut(s) 891
BsrFI RCCGGY 3 cut(s) 31, 277, 775
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 3 cut(s) 31, 277, 775
BssECI CCNNGG 2 cut(s) 84, 835
BssMI GATC 8 cut(s) 78, 239, 427, 460, 656, 678, 766, 1045
BssNI GRCGYC 1 cut(s) 332
BssSI CACGAG 1 cut(s) 1098
BssT1I CCWWGG 1 cut(s) 835
Bst2BI CACGAG 1 cut(s) 1098
Bst4CI ACNGT 2 cut(s) 129, 1089
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 221, 1106
BstDEI CTNAG 6 cut(s) 215, 324, 436, 528, 935, 1036
BstDSI CCRYGG 1 cut(s) 835
BstEII GGTNACC 1 cut(s) 608
BstFNI CGCG 3 cut(s) 17, 1108, 1110
BstH2I RGCGCY 1 cut(s) 1147
BstHHI GCGC 2 cut(s) 1110, 1146
BstKTI GATC 8 cut(s) 81, 242, 430, 463, 659, 681, 769, 1048
BstMAI GTCTC 3 cut(s) 57, 216, 252
BstMBI GATC 8 cut(s) 78, 239, 427, 460, 656, 678, 766, 1045
BstMCI CGRYCG 2 cut(s) 278, 776
BstMWI GCNNNNNNNGC 5 cut(s) 193, 326, 512, 521, 752
BstPI GGTNACC 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 1 cut(s) 894
BstUI CGCG 3 cut(s) 17, 1108, 1110
BstV1I GCAGC 5 cut(s) 145, 307, 499, 536, 733
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 835
BtgZI GCGATG 1 cut(s) 32
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 1 cut(s) 1017
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 221, 1106
CaiI CAGNNNCTG 1 cut(s) 626
CfoI GCGC 2 cut(s) 1110, 1146
Cfr10I RCCGGY 3 cut(s) 31, 277, 775
Cfr13I GGNCC 1 cut(s) 795
CseI GACGC 2 cut(s) 265, 340
Csp6I GTAC 3 cut(s) 382, 433, 840
CviAII CATG 8 cut(s) 76, 497, 605, 660, 836, 953, 967, 1032
CviQI GTAC 3 cut(s) 382, 433, 840
DdeI CTNAG 6 cut(s) 215, 324, 436, 528, 935, 1036
DpnI GATC 8 cut(s) 80, 241, 429, 462, 658, 680, 768, 1047
DpnII GATC 8 cut(s) 78, 239, 427, 460, 656, 678, 766, 1045
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 835
Eco47I GGWCC 1 cut(s) 795
Eco57I CTGAAG 1 cut(s) 957
Eco91I GGTNACC 1 cut(s) 608
EcoO65I GGTNACC 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 835
ErhI CCWWGG 1 cut(s) 835
Esp3I CGTCTC 2 cut(s) 57, 252
FaeI CATG 8 cut(s) 79, 500, 608, 663, 839, 956, 970, 1035
FaqI GGGAC 2 cut(s) 160, 584
FatI CATG 8 cut(s) 75, 496, 604, 659, 835, 952, 966, 1031
FauNDI CATATG 1 cut(s) 1151
FbaI TGATCA 2 cut(s) 678, 766
Fnu4HI GCNGC 8 cut(s) 47, 134, 321, 342, 345, 513, 525, 747
Fsp4HI GCNGC 8 cut(s) 47, 134, 321, 342, 345, 513, 525, 747
FspBI CTAG 1 cut(s) 863
GlaI GCGC 2 cut(s) 1109, 1145
GluI GCNGC 8 cut(s) 47, 134, 321, 342, 345, 513, 525, 747
HaeII RGCGCY 1 cut(s) 1147
HapII CCGG 5 cut(s) 32, 237, 251, 278, 776
HgaI GACGC 2 cut(s) 265, 340
HhaI GCGC 2 cut(s) 1110, 1146
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 8 cut(s) 79, 500, 608, 663, 839, 956, 970, 1035
Hin6I GCGC 2 cut(s) 1108, 1144
HinP1I GCGC 2 cut(s) 1108, 1144
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 7 cut(s) 202, 593, 623, 850, 925, 930, 939
HpaII CCGG 5 cut(s) 32, 237, 251, 278, 776
HphI GGTGA 4 cut(s) 33, 265, 470, 725
Hpy188I TCNGA 8 cut(s) 201, 207, 216, 297, 531, 628, 766, 976
Hpy188III TCNNGA 5 cut(s) 16, 92, 682, 873, 1098
Hpy99I CGWCG 7 cut(s) 17, 133, 172, 184, 187, 334, 1115
HpyAV CCTTC 2 cut(s) 371, 1038
HpyCH4III ACNGT 2 cut(s) 129, 1089
HpyCH4V TGCA 5 cut(s) 63, 291, 506, 524, 749
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 326, 512, 521, 752
HpyF3I CTNAG 6 cut(s) 215, 324, 436, 528, 935, 1036
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 8 cut(s) 79, 500, 608, 663, 839, 956, 970, 1035
HspAI GCGC 2 cut(s) 1108, 1144
Ksp22I TGATCA 2 cut(s) 678, 766
Kzo9I GATC 8 cut(s) 78, 239, 427, 460, 656, 678, 766, 1045
LmnI GCTCC 3 cut(s) 14, 94, 166
Lsp1109I GCAGC 5 cut(s) 145, 307, 499, 536, 733
MaeI CTAG 1 cut(s) 863
MaeIII GTNAC 4 cut(s) 253, 608, 667, 907
MalI GATC 8 cut(s) 80, 241, 429, 462, 658, 680, 768, 1047
MboI GATC 8 cut(s) 78, 239, 427, 460, 656, 678, 766, 1045
MboII GAAGA 7 cut(s) 132, 138, 234, 277, 380, 443, 797
MfeI CAATTG 2 cut(s) 260, 1136
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 3 cut(s) 11, 221, 894
MluCI AATT 7 cut(s) 154, 260, 518, 584, 801, 879, 1136
MlyI GAGTC 3 cut(s) 933, 934, 939
MseI TTAA 3 cut(s) 447, 636, 897
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 5 cut(s) 32, 237, 251, 278, 776
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 2 cut(s) 260, 1136
Mva1269I GAATGC 1 cut(s) 291
MvnI CGCG 3 cut(s) 17, 1108, 1110
MwoI GCNNNNNNNGC 5 cut(s) 193, 326, 512, 521, 752
NciI CCSGG 1 cut(s) 237
NcoI CCATGG 1 cut(s) 835
NdeI CATATG 1 cut(s) 1151
NdeII GATC 8 cut(s) 78, 239, 427, 460, 656, 678, 766, 1045
NlaIII CATG 8 cut(s) 79, 500, 608, 663, 839, 956, 970, 1035
NlaIV GGNNCC 5 cut(s) 90, 162, 234, 691, 893
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 253, 667
NruI TCGCGA 1 cut(s) 17
PcsI WCGNNNNNNNCGW 3 cut(s) 149, 164, 176
PctI GAATGC 1 cut(s) 291
PfeI GAWTC 4 cut(s) 202, 593, 623, 850
PflFI GACNNNGTC 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 235
PkrI GCNGC 8 cut(s) 48, 135, 322, 343, 346, 514, 526, 748
PleI GAGTC 3 cut(s) 933, 933, 938
PpsI GAGTC 3 cut(s) 933, 933, 938
PspEI GGTNACC 1 cut(s) 608
PspN4I GGNNCC 5 cut(s) 90, 162, 234, 691, 893
PspPI GGNCC 1 cut(s) 795
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 626
PsuI RGATCY 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 334
RruI TCGCGA 1 cut(s) 17
RsaI GTAC 3 cut(s) 383, 434, 841
RsaNI GTAC 3 cut(s) 382, 433, 840
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 3 cut(s) 447, 636, 897
SatI GCNGC 8 cut(s) 47, 134, 321, 342, 345, 513, 525, 747
Sau3AI GATC 8 cut(s) 78, 239, 427, 460, 656, 678, 766, 1045
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 3 cut(s) 933, 934, 939
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 3 cut(s) 11, 221, 894
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 7 cut(s) 154, 260, 518, 584, 801, 879, 1136
SsiI CCGC 7 cut(s) 44, 47, 164, 230, 341, 344, 651
SspMI CTAG 1 cut(s) 863
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 2 cut(s) 129, 1089
TaqI TCGA 6 cut(s) 305, 772, 872, 928, 1024, 1048
TasI AATT 7 cut(s) 154, 260, 518, 584, 801, 879, 1136
TauI GCSGC 3 cut(s) 49, 344, 347
TfiI GAWTC 4 cut(s) 202, 593, 623, 850
Tru1I TTAA 3 cut(s) 447, 636, 897
Tru9I TTAA 3 cut(s) 447, 636, 897
TscAI CASTG 1 cut(s) 1017
TseFI GTSAC 2 cut(s) 253, 667
TseI GCWGC 5 cut(s) 133, 320, 512, 524, 746
Tsp45I GTSAC 2 cut(s) 253, 667
TspDTI ATGAA 3 cut(s) 570, 804, 1020
TspGWI ACGGA 2 cut(s) 379, 702
TspRI CASTG 1 cut(s) 1017
Tth111I GACNNNGTC 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 795
XapI RAATTY 3 cut(s) 154, 518, 584
XspI CTAG 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.