Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004773.1

Orthogroup ID

OG0003902

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2432

Gene Structure 2432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004773.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 347 bp

ttttatccctttttctttctttctcaatttcttatgtcttggtttataattctgacttctctacccctcctgcactttcaactgtcaactatttagatggggatgacaaacacactgcgagaaagtattttgcagttcttggaggtgatccaaaacccaagctaaaaaagagaagggctgatagtctcataagccaggagaaaccaggacatgtttatgatcactatgaaaatggttgtggctggtgggactgcaacatggagggtattgacaatgaagaagttggagtcaatgaggtgtgggaaggagtgggctcaaccacattgggaggaatagagtggcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.77

Weight (kDa)

4.89

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13690
fragaria_vesca	FvH4_4g00420
malus_domestica	MD04G1004500.v1.1
prunus_persica	Prupe.1G004200_v2.0.a1 Prupe.1G004200_v2.0.a1
pyrus_communis	pycom04g00460
rosa_chinensis	RchiOBHm_Chr4g0385541 RchiOBHm_Chr6g0244431
rosa_laevigata	RLG00000010211 RLG00000010214 RLG00000010217 RLG00000010226 RLG00000015361
rosa_multiflora	Rmu_co8490289.1_g000001 Rmu_sc0004773.1_g000001 Rmu_sc0004773.1_g000003 Rmu_sc0008728.1_g000011
rosa_roxburghii	Rroxscaffold_5G00333320 Rroxscaffold_5G00333430 Rroxscaffold_5G00333450 Rroxscaffold_7G00215830
rosa_rugosa	Rorug03G0301200 Rorug03G0301300 Rorug05G0508600
rosa_samantha	Rh4AG004600 Rh4AG005000 Rh4AG005800 Rh4AG006700 Rh4BG004200 Rh4CG007200 Rh4DG006100 Rh6AG023700 Rh6BG018900
rosa_wichuraiana	Rw4G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AclWI	GGATC	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	194, 204
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	316
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	2 cut(s)	196, 206
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	196, 206
BmrFI	CCNGG	2 cut(s)	196, 206
BseBI	CCWGG	2 cut(s)	196, 206
BseGI	GGATG	1 cut(s)	108
BsgI	GTGCAG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	147, 219
BspPI	GGATC	1 cut(s)	142
BssMI	GATC	2 cut(s)	147, 219
Bst2UI	CCWGG	2 cut(s)	196, 206
Bst4CI	ACNGT	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	150, 222
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	147, 219
BstNI	CCWGG	2 cut(s)	196, 206
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	194, 204
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
CviAII	CATG	2 cut(s)	211, 258
CviJI	RGCY	5 cut(s)	162, 178, 194, 242, 314
CviKI_1	RGCY	5 cut(s)	162, 178, 194, 242, 314
DpnI	GATC	2 cut(s)	149, 221
DpnII	GATC	2 cut(s)	147, 219
Eco24I	GRGCYC	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	194, 204
EcoT38I	GRGCYC	1 cut(s)	316
FaeI	CATG	2 cut(s)	214, 261
FaiI	YATR	7 cut(s)	35, 47, 190, 212, 218, 227, 259
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	2 cut(s)	210, 257
FbaI	TGATCA	1 cut(s)	219
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	214, 261
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	54
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	167, 298
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	73, 133, 254
Hsp92II	CATG	2 cut(s)	214, 261
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	147, 219
LpnPI	CCDG	6 cut(s)	83, 181, 191, 208, 218, 228
MalI	GATC	2 cut(s)	149, 221
MboI	GATC	2 cut(s)	147, 219
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	2 cut(s)	26, 48
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	77, 136, 255, 288, 322
MslI	CAYNNNNRTG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	196, 206
MvaI	CCWGG	2 cut(s)	196, 206
NdeII	GATC	2 cut(s)	147, 219
NlaIII	CATG	2 cut(s)	214, 261
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PscI	ACATGT	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	194, 204
PspGI	CCWGG	2 cut(s)	194, 204
RseI	CAYNNNNRTG	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	147, 219
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	196, 206
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	3 cut(s)	147, 164, 299
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	26, 48
StyD4I	CCNGG	2 cut(s)	194, 204
TaaI	ACNGT	1 cut(s)	84
TasI	AATT	2 cut(s)	26, 48
TscAI	CASTG	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	242, 290
TspRI	CASTG	1 cut(s)	120
XceI	RCATGY	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.