Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003902

Physical Location & Seq

Genomic Coordinates Forward (+)

2770275 .. 2775707

Gene Structure 5433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAAACCAGTGGGCGATGTGGAGACAAATCAACTTGTTGGGCATCATTGTGGTGTGTCAAGGTCGCAAACGATGATGCGGATAAGGTCTCACATGGGTCGCTCTCGGACATTTCAGAACAGAGGCTGAAGCACAATTCTGGAACACCCAAGACAGTTAAGGTGAAGTCACGGCCATTCTCATCGTTATTGGATCTGAAAGATCTAAGTGGGTCCACTGATGAGCAAATTGAGGCCAAGAAAGGAGGGGAAGCAGAGAAGAGTTCTGTAGCATTGGCATTTGAAAAATTTAAGCACACTGATATAGGAAAATGCCAATCCAAAGTTTCACAAATTGCTGGTGAAGTAGAATGTCCTGACAAAGATGATTTACCAGAATCAAGAAAAAGGAGACACCCTTGTAAAGATGGGGATGACAAACACACTGCGAGAAAGTATTTTGCAGTTCTTGGAGGTGATCAAAAACCCAAGCTAAAAAAGAGAAGGGCTGAGAGTCTCATAATCCAAGAGAAACCGGGACATGTTTATGATCACTATGAAAATGGTTGTGGCTGGTGGGACTGCAATATGGAGGGTATTGACAATGAAGAAGTTGGTGTCCATGAGGTGTGGGAAGGAGTGGGCTCAACGACATTGGGAGGAATAGAGTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.2

Weight (kDa)

6.15

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13690
fragaria_vesca	FvH4_4g00420
malus_domestica	MD04G1004500.v1.1
prunus_persica	Prupe.1G004200_v2.0.a1 Prupe.1G004200_v2.0.a1
pyrus_communis	pycom04g00460
rosa_chinensis	RchiOBHm_Chr4g0385541 RchiOBHm_Chr6g0244431
rosa_laevigata	RLG00000010211 RLG00000010214 RLG00000010217 RLG00000010226 RLG00000015361
rosa_multiflora	Rmu_co8490289.1_g000001 Rmu_sc0004773.1_g000001 Rmu_sc0004773.1_g000003 Rmu_sc0008728.1_g000011
rosa_roxburghii	Rroxscaffold_5G00333320 Rroxscaffold_5G00333430 Rroxscaffold_5G00333450 Rroxscaffold_7G00215830
rosa_rugosa	Rorug03G0301200 Rorug03G0301300 Rorug05G0508600
rosa_samantha	Rh4AG004600 Rh4AG005000 Rh4AG005800 Rh4AG006700 Rh4BG004200 Rh4CG007200 Rh4DG006100 Rh6AG023700 Rh6BG018900
rosa_wichuraiana	Rw4G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	284
AluBI	AGCT	1 cut(s)	472
AluI	AGCT	1 cut(s)	472
Alw26I	GTCTC	4 cut(s)	18, 94, 385, 500
AlwI	GGATC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	173, 234
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	3 cut(s)	175, 353, 467
AvaII	GGWCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	626
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	188
BclI	TGATCA	2 cut(s)	457, 529
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	4 cut(s)	18, 94, 385, 500
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	53, 67
BpuMI	CCSGG	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	175, 236
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	2 cut(s)	531, 572
BsmAI	GTCTC	4 cut(s)	18, 94, 385, 500
BsmFI	GGGAC	2 cut(s)	531, 572
BsnI	GGCC	2 cut(s)	175, 236
Bso31I	GGTCTC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	4 cut(s)	193, 202, 457, 529
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	2 cut(s)	175, 236
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	9
BssMI	GATC	4 cut(s)	193, 202, 457, 529
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	206, 489
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	4 cut(s)	196, 205, 460, 532
BstMAI	GTCTC	4 cut(s)	18, 94, 385, 500
BstMBI	GATC	4 cut(s)	193, 202, 457, 529
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	193, 202
BstYI	RGATCY	2 cut(s)	193, 202
BsuRI	GGCC	2 cut(s)	175, 236
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	4 cut(s)	16, 216, 297, 423
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	213
CviAII	CATG	3 cut(s)	95, 521, 602
CviJI	RGCY	7 cut(s)	127, 175, 236, 472, 488, 552, 624
CviKI_1	RGCY	7 cut(s)	127, 175, 236, 472, 488, 552, 624
DdeI	CTNAG	2 cut(s)	206, 489
DpnI	GATC	4 cut(s)	195, 204, 459, 531
DpnII	GATC	4 cut(s)	193, 202, 457, 529
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	626
FaeI	CATG	3 cut(s)	98, 524, 605
FaiI	YATR	8 cut(s)	96, 305, 500, 522, 528, 537, 569, 603
FaqI	GGGAC	2 cut(s)	531, 572
FatI	CATG	3 cut(s)	94, 520, 601
FbaI	TGATCA	2 cut(s)	457, 529
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	626
HaeIII	GGCC	2 cut(s)	175, 236
HapII	CCGG	1 cut(s)	515
Hin1II	CATG	3 cut(s)	98, 524, 605
HinfI	GANTC	2 cut(s)	377, 493
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	3 cut(s)	175, 353, 467
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	109, 118, 198
Hpy188III	TCNNGA	3 cut(s)	141, 356, 381
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	2 cut(s)	477, 608
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	443, 564
HpyF3I	CTNAG	2 cut(s)	206, 489
Hsp92II	CATG	3 cut(s)	98, 524, 605
Ksp22I	TGATCA	2 cut(s)	457, 529
Kzo9I	GATC	4 cut(s)	193, 202, 457, 529
LpnPI	CCDG	7 cut(s)	22, 126, 324, 369, 387, 528, 538
LweI	GCATC	2 cut(s)	53, 67
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	4 cut(s)	195, 204, 459, 531
MboI	GATC	4 cut(s)	193, 202, 457, 529
MboII	GAAGA	2 cut(s)	271, 599
MflI	RGATCY	2 cut(s)	193, 202
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	4 cut(s)	136, 228, 287, 333
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	7 cut(s)	117, 226, 239, 446, 565, 598, 632
MseI	TTAA	2 cut(s)	159, 291
MslI	CAYNNNNRTG	3 cut(s)	49, 52, 525
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	516
NciI	CCSGG	1 cut(s)	516
NdeII	GATC	4 cut(s)	193, 202, 457, 529
NlaIII	CATG	3 cut(s)	98, 524, 605
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	524
PciI	ACATGT	1 cut(s)	520
PfeI	GAWTC	1 cut(s)	377
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PscI	ACATGT	1 cut(s)	520
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	193, 202
RseI	CAYNNNNRTG	3 cut(s)	49, 52, 525
SaqAI	TTAA	2 cut(s)	159, 291
Sau3AI	GATC	4 cut(s)	193, 202, 457, 529
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	1 cut(s)	626
SetI	ASST	6 cut(s)	66, 90, 165, 457, 474, 609
SfaNI	GCATC	2 cut(s)	53, 67
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	3 cut(s)	49, 52, 525
Sse9I	AATT	4 cut(s)	136, 228, 287, 333
SsiI	CCGC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	514
TaaI	ACNGT	1 cut(s)	157
TasI	AATT	4 cut(s)	136, 228, 287, 333
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	159, 291
Tru9I	TTAA	2 cut(s)	159, 291
TscAI	CASTG	4 cut(s)	16, 223, 304, 430
TseFI	GTSAC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	552, 600
TspRI	CASTG	4 cut(s)	16, 223, 304, 430
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.