Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008728.1

Orthogroup ID

OG0003902

Physical Location & Seq

Genomic Coordinates Reverse (-)

83605 .. 84064

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008728.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtctttggtttataattctgacttctctacccctcctgctctttcaaatgtcaactatttagatggggatgacaaacacactgcgagaaagtattttgcagttcttggaggtgaaccaaaacccaagctaaaaaagagaagggctgagagtctcataagccaagagaaaccaggacatgtttatgatcactatgaaaatggttgtggctggtgggactgcaatatggagggtattattgacaatgaagaagttggtgtcaatgatgtgtgggaaggattgggctcaaccacattgggaggaatagagtggcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.8

Weight (kDa)

4.92

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13690
fragaria_vesca	FvH4_4g00420
malus_domestica	MD04G1004500.v1.1
prunus_persica	Prupe.1G004200_v2.0.a1 Prupe.1G004200_v2.0.a1
pyrus_communis	pycom04g00460
rosa_chinensis	RchiOBHm_Chr4g0385541 RchiOBHm_Chr6g0244431
rosa_laevigata	RLG00000010211 RLG00000010214 RLG00000010217 RLG00000010226 RLG00000015361
rosa_multiflora	Rmu_co8490289.1_g000001 Rmu_sc0004773.1_g000001 Rmu_sc0004773.1_g000003 Rmu_sc0008728.1_g000011
rosa_roxburghii	Rroxscaffold_5G00333320 Rroxscaffold_5G00333430 Rroxscaffold_5G00333450 Rroxscaffold_7G00215830
rosa_rugosa	Rorug03G0301200 Rorug03G0301300 Rorug05G0508600
rosa_samantha	Rh4AG004600 Rh4AG005000 Rh4AG005800 Rh4AG006700 Rh4BG004200 Rh4CG007200 Rh4DG006100 Rh6AG023700 Rh6BG018900
rosa_wichuraiana	Rw4G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	287
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	174
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	139
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	5 cut(s)	130, 146, 162, 210, 285
CviKI_1	RGCY	5 cut(s)	130, 146, 162, 210, 285
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	1 cut(s)	182
FaiI	YATR	6 cut(s)	15, 158, 180, 186, 195, 227
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	187
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	55, 116
Hpy188I	TCNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	55, 116
HpyAV	CCTTC	2 cut(s)	135, 269
HpyCH4V	TGCA	2 cut(s)	101, 222
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	51, 159, 186, 196
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	45, 104, 223, 293
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	182
NspI	RCATGY	1 cut(s)	182
PciI	ACATGT	1 cut(s)	178
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PscI	ACATGT	1 cut(s)	178
PsiI	TTATAA	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	2 cut(s)	115, 132
SgeI	CNNG	9 cut(s)	50, 99, 119, 139, 176, 185, 186, 191, 223
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	172
TasI	AATT	1 cut(s)	16
TscAI	CASTG	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	210, 261
TspRI	CASTG	1 cut(s)	88
XceI	RCATGY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.