Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003902

Physical Location & Seq

Genomic Coordinates Forward (+)

397518 .. 401636

Gene Structure 4119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGCTCCAAGAAAACTCCGGTTGGGTTTAGGGTTTTGGGGCAGCGCTCGCTTCCTTGTTCATTCTCTTGTCGCAATAAAATCCCTGCCAAGGTCGCAGAAGATAATGAGGGCTCGCTCGAGAGGCTCAACCACAATTCTGCAACACCCAAGACAGTAAAGGTGAAGTCGCAGCCATTTTCATCATTATTGGGTCTGAAAGTTCCAAATGGGTCCAGTGATGAACAAATTGAGGCCAAGAAAGGAGGGGTAGCAGAGCAGATTTCTGTAGCATTGGCATTTGAAAACTTTAAGCATACCGACATAGGAAAAGGGCAGTCTATAGTTTCACTAAGTGCTGGTGAAGTAGAGTGTTCTGACCAAGATGACTTACAAGAATTAAGAAAAAGGAGAAACCCTTGTGAAGATGGGGATGACAAACACACTGTGAGAAAGTATTTTGCAGTTCTTGGAGGTGATCCAAAACACAAACTGAAAAAGAGAAGGGCCGAGAGTCTCATAAGCCCAGTGAAACCAGGACATGTTTATGATCACTATGAAAATGGTTGTGGGTGGTGGGACGGTAATATGGAGGGTATTGACAATGAAGAAGTTGGTGTCAATGAGGTGTGGGAAGGAGTAGGCTCAACCACATTGGGAGGAATAGAGTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.93

Weight (kDa)

6.4

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13690
fragaria_vesca	FvH4_4g00420
malus_domestica	MD04G1004500.v1.1
prunus_persica	Prupe.1G004200_v2.0.a1 Prupe.1G004200_v2.0.a1
pyrus_communis	pycom04g00460
rosa_chinensis	RchiOBHm_Chr4g0385541 RchiOBHm_Chr6g0244431
rosa_laevigata	RLG00000010211 RLG00000010214 RLG00000010217 RLG00000010226 RLG00000015361
rosa_multiflora	Rmu_co8490289.1_g000001 Rmu_sc0004773.1_g000001 Rmu_sc0004773.1_g000003 Rmu_sc0008728.1_g000011
rosa_roxburghii	Rroxscaffold_5G00333320 Rroxscaffold_5G00333430 Rroxscaffold_5G00333450 Rroxscaffold_7G00215830
rosa_rugosa	Rorug03G0301200 Rorug03G0301300 Rorug05G0508600
rosa_samantha	Rh4AG004600 Rh4AG005000 Rh4AG005800 Rh4AG006700 Rh4BG004200 Rh4CG007200 Rh4DG006100 Rh6AG023700 Rh6BG018900
rosa_wichuraiana	Rw4G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	452
AdeI	CACNNNGTG	2 cut(s)	335, 427
AfeI	AGCGCT	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	119
Aor51HI	AGCGCT	1 cut(s)	47
AoxI	GGCC	2 cut(s)	234, 486
ApeKI	GCWGC	2 cut(s)	43, 172
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	213, 486
AsuHPI	GGTGA	3 cut(s)	175, 353, 467
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	8, 116
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	55, 184
BccI	CCATC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	267, 321
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	2 cut(s)	44, 173
BlsI	GCNGC	2 cut(s)	45, 174
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	213, 486
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	516
BmrI	ACTGGG	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	216, 506
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseNI	ACTGG	2 cut(s)	216, 506
BseXI	GCAGC	2 cut(s)	55, 184
BshFI	GGCC	2 cut(s)	236, 488
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	2 cut(s)	236, 488
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	8, 116
Bsp143I	GATC	2 cut(s)	457, 529
BspANI	GGCC	2 cut(s)	236, 488
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	216, 506
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	457, 529
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	3 cut(s)	157, 427, 563
BstC8I	GCNNGC	2 cut(s)	50, 116
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	460, 532
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	457, 529
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 95, 124
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	2 cut(s)	267, 321
BstV1I	GCAGC	2 cut(s)	55, 184
BsuRI	GGCC	2 cut(s)	236, 488
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	3 cut(s)	223, 423, 513
Cac8I	GCNNGC	2 cut(s)	50, 116
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	213, 486
CviAII	CATG	1 cut(s)	521
CviJI	RGCY	8 cut(s)	6, 114, 127, 175, 236, 488, 504, 624
CviKI_1	RGCY	8 cut(s)	6, 114, 127, 175, 236, 488, 504, 624
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	2 cut(s)	459, 531
DpnII	GATC	2 cut(s)	457, 529
DraIII	CACNNNGTG	2 cut(s)	335, 427
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	2 cut(s)	8, 116
Eco47I	GGWCC	1 cut(s)	213
Eco47III	AGCGCT	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	8, 116
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	524
FaiI	YATR	8 cut(s)	297, 305, 323, 500, 522, 528, 537, 569
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	44, 173
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	2 cut(s)	8, 116
Fsp4HI	GCNGC	2 cut(s)	44, 173
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	2 cut(s)	44, 173
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	2 cut(s)	236, 488
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	175, 353, 467
Hpy188I	TCNGA	2 cut(s)	198, 358
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	477, 608
HpyCH4III	ACNGT	3 cut(s)	157, 427, 563
HpyCH4V	TGCA	2 cut(s)	143, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 95, 124
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	457, 529
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	7 cut(s)	33, 99, 229, 324, 501, 519, 528
Lsp1109I	GCAGC	2 cut(s)	55, 184
MalI	GATC	2 cut(s)	459, 531
MboI	GATC	2 cut(s)	457, 529
MboII	GAAGA	3 cut(s)	113, 416, 599
MhlI	GDGCHC	2 cut(s)	8, 116
MluCI	AATT	3 cut(s)	136, 228, 377
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	8 cut(s)	103, 117, 226, 239, 446, 565, 598, 632
MseI	TTAA	2 cut(s)	291, 380
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	49, 95, 124
NdeII	GATC	2 cut(s)	457, 529
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	1 cut(s)	514
NspI	RCATGY	1 cut(s)	524
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	520
PkrI	GCNGC	2 cut(s)	45, 174
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PscI	ACATGT	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	213, 486
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	291, 380
SatI	GCNGC	2 cut(s)	44, 173
Sau3AI	GATC	2 cut(s)	457, 529
Sau96I	GGNCC	2 cut(s)	213, 486
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	2 cut(s)	8, 116
SetI	ASST	5 cut(s)	8, 96, 165, 457, 609
SfcI	CTRYAG	2 cut(s)	267, 321
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	136, 228, 377
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	157, 427, 563
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	136, 228, 377
Tru1I	TTAA	2 cut(s)	291, 380
Tru9I	TTAA	2 cut(s)	291, 380
TscAI	CASTG	3 cut(s)	223, 430, 513
TseI	GCWGC	2 cut(s)	43, 172
TspDTI	ATGAA	5 cut(s)	51, 171, 237, 552, 600
TspRI	CASTG	3 cut(s)	223, 430, 513
VpaK11BI	GGWCC	1 cut(s)	213
XceI	RCATGY	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.