Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003902

Physical Location & Seq

Genomic Coordinates Forward (+)

423366 .. 426305

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGTTGTCGTCAAAACCCATATTAATTTGCGTCCTTATACAATCATATATGTGACATTCACCCTCCGCCAAAACTTGAAACCTTGCCGCCAAAACTTCAAAAATAGGGTTTTTAAAGAATATCACTTTCCAAAGCTCCAATGCCGAACTAAGCAGAGGAAATCCCGAAGAAAGAAGATTAGCGTAGAAATGAGGTCAAAGAAAGCTCCGGTGGCATTTAGGGCGGCGGGGCAGCGCTCACTGCCTTCATTATTCTCGTCTTGCTCAAAAACGCCGGCCAATGTTGCAGAAGAAAATCCAGATAAAGGCTACACTGTGCCGCTTTCAGACTCTTCAGAGAAACAGCTGCGCCGGACTTCTGCAAAATCCACCATAGTAAAGGAAAGGTTAAGGCCCTTCTCATCTGTATTTGGGTCACGAGATTCAAGTGAGGCCGTTGACGAGCAAGTTGGGGCAAAGAAAGGAGGGGAAGCAGAGAAGAACCATGTTGCTGCTTTAGTGGCTCTCGAACTTTTCAACCATACTGATCTAGGAAAAGGACATTCTGTAGGTCCATCAACTGCTGGTGAAGTTGAAAGTTCTAATGAAGATGTAGTTCAAGAATCGAGAAAAAGGAGGAACCCTTTTGATGGTGGCGGTTACAAACCCATTGTAAGAAAGAATTTCACAGTGCTAGGAGGTGATCCAACGCCAAAACCGAACCAGAAAAGGAGAAGGGATGAGAGCTTGATCATAGGCAAGGAGAAACCAGGGCCTGCTTATAATCACTATGCAAGCGGGCGTGGGTGGTGGGACTGCGACCGGGAGGGGATTGACAACGAAGAAATAGGACTGAATGAGGTGTGGGAAGGAGTCGGATCTACCACATTGGGAGGAATAGAGTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.18

Weight (kDa)

9.76

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13690
fragaria_vesca	FvH4_4g00420
malus_domestica	MD04G1004500.v1.1
prunus_persica	Prupe.1G004200_v2.0.a1 Prupe.1G004200_v2.0.a1
pyrus_communis	pycom04g00460
rosa_chinensis	RchiOBHm_Chr4g0385541 RchiOBHm_Chr6g0244431
rosa_laevigata	RLG00000010211 RLG00000010214 RLG00000010217 RLG00000010226 RLG00000015361
rosa_multiflora	Rmu_co8490289.1_g000001 Rmu_sc0004773.1_g000001 Rmu_sc0004773.1_g000003 Rmu_sc0008728.1_g000011
rosa_roxburghii	Rroxscaffold_5G00333320 Rroxscaffold_5G00333430 Rroxscaffold_5G00333450 Rroxscaffold_7G00215830
rosa_rugosa	Rorug03G0301200 Rorug03G0301300 Rorug05G0508600
rosa_samantha	Rh4AG004600 Rh4AG005000 Rh4AG005800 Rh4AG006700 Rh4BG004200 Rh4CG007200 Rh4DG006100 Rh6AG023700 Rh6BG018900
rosa_wichuraiana	Rw4G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AciI	CCGC	7 cut(s)	67, 88, 224, 227, 320, 636, 777
AclWI	GGATC	2 cut(s)	677, 865
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	1 cut(s)	318
AfeI	AGCGCT	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	305, 629
AgsI	TTSAA	6 cut(s)	79, 100, 426, 517, 575, 599
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	4 cut(s)	136, 206, 346, 726
AluI	AGCT	4 cut(s)	136, 206, 346, 726
AlwI	GGATC	2 cut(s)	677, 865
AlwNI	CAGNNNCTG	1 cut(s)	755
Aor51HI	AGCGCT	1 cut(s)	236
AoxI	GGCC	4 cut(s)	276, 392, 432, 752
ApeKI	GCWGC	3 cut(s)	232, 346, 491
ApoI	RAATTY	1 cut(s)	661
AseI	ATTAAT	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	237, 351
AspS9I	GGNCC	3 cut(s)	393, 551, 752
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	3 cut(s)	52, 578, 692
AvaII	GGWCC	1 cut(s)	551
BauI	CACGAG	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	244, 333, 478
BccI	CCATC	2 cut(s)	562, 623
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	1 cut(s)	750
BclI	TGATCA	1 cut(s)	729
BcnI	CCSGG	1 cut(s)	803
BfaI	CTAG	2 cut(s)	530, 674
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	238
BisI	GCNGC	6 cut(s)	88, 225, 233, 320, 347, 492
BlsI	GCNGC	6 cut(s)	89, 226, 234, 321, 348, 493
Bme1390I	CCNGG	2 cut(s)	750, 803
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	3 cut(s)	393, 551, 752
BmiI	GGNNCC	1 cut(s)	620
BmrFI	CCNGG	2 cut(s)	750, 803
BpuMI	CCSGG	1 cut(s)	803
BsaJI	CCNNGG	1 cut(s)	749
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 629
Bse118I	RCCGGY	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	749
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	2 cut(s)	305, 629
BseXI	GCAGC	3 cut(s)	244, 333, 478
Bsh1285I	CGRYCG	1 cut(s)	802
BshFI	GGCC	4 cut(s)	278, 394, 434, 754
BsiEI	CGRYCG	1 cut(s)	802
BsiSI	CCGG	4 cut(s)	209, 275, 352, 802
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	2 cut(s)	305, 629
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	4 cut(s)	278, 394, 434, 754
Bsp143I	GATC	4 cut(s)	526, 682, 729, 857
BspACI	CCGC	7 cut(s)	67, 88, 224, 227, 320, 636, 777
BspANI	GGCC	4 cut(s)	278, 394, 434, 754
BspLI	GGNNCC	1 cut(s)	620
BspPI	GGATC	2 cut(s)	677, 865
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	749
BssMI	GATC	4 cut(s)	526, 682, 729, 857
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	316, 670
Bst6I	CTCTTC	1 cut(s)	337
BstC8I	GCNNGC	4 cut(s)	276, 756, 775, 779
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	724
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	237, 351
BstKTI	GATC	4 cut(s)	529, 685, 732, 860
BstMBI	GATC	4 cut(s)	526, 682, 729, 857
BstMCI	CGRYCG	1 cut(s)	802
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 221, 241, 284, 500
BstNI	CCWGG	1 cut(s)	750
BstSCI	CCNGG	2 cut(s)	748, 801
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	244, 333, 478
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BsuRI	GGCC	4 cut(s)	278, 394, 434, 754
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	3 cut(s)	239, 312, 675
Cac8I	GCNNGC	4 cut(s)	276, 756, 775, 779
CaiI	CAGNNNCTG	1 cut(s)	755
CfoI	GCGC	2 cut(s)	237, 351
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	3 cut(s)	393, 551, 752
CseI	GACGC	1 cut(s)	20
CviAII	CATG	1 cut(s)	485
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	4 cut(s)	528, 684, 731, 859
DpnII	GATC	4 cut(s)	526, 682, 729, 857
DraI	TTTAAA	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
EciI	GGCGGA	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	551
Eco47III	AGCGCT	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	318
EcoO109I	RGGNCCY	2 cut(s)	393, 752
EcoRII	CCWGG	1 cut(s)	748
FaeI	CATG	1 cut(s)	488
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	1 cut(s)	484
FauI	CCCGC	2 cut(s)	220, 770
FbaI	TGATCA	1 cut(s)	729
Fnu4HI	GCNGC	6 cut(s)	88, 225, 233, 320, 347, 492
FokI	GGATG	1 cut(s)	731
Fsp4HI	GCNGC	6 cut(s)	88, 225, 233, 320, 347, 492
FspBI	CTAG	2 cut(s)	530, 674
GlaI	GCGC	2 cut(s)	236, 350
GluI	GCNGC	6 cut(s)	88, 225, 233, 320, 347, 492
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	4 cut(s)	278, 394, 434, 754
HapII	CCGG	4 cut(s)	209, 275, 352, 802
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	237, 351
Hin1II	CATG	1 cut(s)	488
Hin6I	GCGC	2 cut(s)	235, 349
HinP1I	GCGC	2 cut(s)	235, 349
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	4 cut(s)	329, 422, 602, 852
HpaII	CCGG	4 cut(s)	209, 275, 352, 802
HphI	GGTGA	3 cut(s)	52, 578, 692
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	3 cut(s)	328, 337, 857
Hpy188III	TCNNGA	6 cut(s)	165, 299, 417, 506, 599, 606
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	4 cut(s)	255, 406, 708, 842
HpyCH4III	ACNGT	2 cut(s)	316, 670
HpyCH4V	TGCA	3 cut(s)	287, 362, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 221, 241, 284, 500
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	488
HspAI	GCGC	2 cut(s)	235, 349
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	4 cut(s)	526, 682, 729, 857
LmnI	GCTCC	2 cut(s)	141, 211
Lsp1109I	GCAGC	3 cut(s)	244, 333, 478
MaeI	CTAG	2 cut(s)	530, 674
MaeIII	GTNAC	3 cut(s)	52, 414, 638
MalI	GATC	4 cut(s)	528, 684, 731, 859
MboI	GATC	4 cut(s)	526, 682, 729, 857
MboII	GAAGA	7 cut(s)	180, 187, 302, 324, 490, 599, 833
MflI	RGATCY	1 cut(s)	857
MluCI	AATT	2 cut(s)	25, 661
MlyI	GAGTC	2 cut(s)	323, 861
MmeI	TCCRAC	2 cut(s)	710, 835
MroNI	GCCGGC	1 cut(s)	274
MseI	TTAA	3 cut(s)	24, 114, 389
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	4 cut(s)	209, 275, 352, 802
MspR9I	CCNGG	2 cut(s)	750, 803
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	5 cut(s)	212, 221, 241, 284, 500
NaeI	GCCGGC	1 cut(s)	276
NciI	CCSGG	1 cut(s)	803
NdeII	GATC	4 cut(s)	526, 682, 729, 857
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	1 cut(s)	620
NmuCI	GTSAC	2 cut(s)	52, 414
PcsI	WCGNNNNNNNCGW	1 cut(s)	695
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	422, 602
PkrI	GCNGC	6 cut(s)	89, 226, 234, 321, 348, 493
PleI	GAGTC	2 cut(s)	323, 860
PpsI	GAGTC	2 cut(s)	323, 860
PshBI	ATTAAT	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	620
PspPI	GGNCC	3 cut(s)	393, 551, 752
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	857
PvuII	CAGCTG	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	24, 114, 389
SatI	GCNGC	6 cut(s)	88, 225, 233, 320, 347, 492
Sau3AI	GATC	4 cut(s)	526, 682, 729, 857
Sau96I	GGNCC	3 cut(s)	393, 551, 752
SchI	GAGTC	2 cut(s)	323, 861
ScrFI	CCNGG	2 cut(s)	750, 803
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	25, 661
SsiI	CCGC	7 cut(s)	67, 88, 224, 227, 320, 636, 777
SspMI	CTAG	2 cut(s)	530, 674
StyD4I	CCNGG	2 cut(s)	748, 801
TaaI	ACNGT	2 cut(s)	316, 670
TaqI	TCGA	2 cut(s)	507, 605
TasI	AATT	2 cut(s)	25, 661
TauI	GCSGC	3 cut(s)	90, 227, 322
TfiI	GAWTC	2 cut(s)	422, 602
Tru1I	TTAA	3 cut(s)	24, 114, 389
Tru9I	TTAA	3 cut(s)	24, 114, 389
TscAI	CASTG	3 cut(s)	246, 319, 675
TseFI	GTSAC	2 cut(s)	52, 414
TseI	GCWGC	3 cut(s)	232, 346, 491
Tsp45I	GTSAC	2 cut(s)	52, 414
TspDTI	ATGAA	2 cut(s)	237, 600
TspRI	CASTG	3 cut(s)	246, 319, 675
VpaK11BI	GGWCC	1 cut(s)	551
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	1 cut(s)	661
XspI	CTAG	2 cut(s)	530, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.