Rh4DG006100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003902
Physical Location & Seq
Forward (+)
1094739 .. 1100435
5697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG006100.1

Sequence Viewer

Length: 339 bp
ATGAGCTCCAAGAAAACTCCGGTTGGGTTTAGGGTCTTGGGGCAGCGCTCACTTTCTTCATCATTTTCTTCTCGCTGTAAAATCCCTGTCAAGGTTGCAGAAGATGATGCGGACAAGGGCTCGCATGGGTCGCTCTCGGACGTTTCAGAACAGAGGCTGAAGCACAATTCTGGAACACCCAAGACAGTAAAGGTGCTGCAGAGGGAGATTCAGTGTAGGCCATGCCGGGGTAGTGCTAGAGATGGTTCAAAGTCCAAAGACACTGAAACCGAGGGCGGAGTAGGGAATAGCAATCTGAACATATGTGGCCGAAGTCATTGTTGTCAACAGGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.04

Weight (kDa)

9.35

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 276
AcoI YGGCCR 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 179
AfeI AGCGCT 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 91, 227
AgsI TTSAA 1 cut(s) 249
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw21I GWGCWC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 157
Aor51HI AGCGCT 1 cut(s) 47
AoxI GGCC 2 cut(s) 218, 307
ApeKI GCWGC 2 cut(s) 43, 196
AspLEI GCGC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 227
BanII GRGCYC 2 cut(s) 8, 122
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 55, 183
BccI CCATC 1 cut(s) 236
BcnI CCSGG 1 cut(s) 227
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 49
BisI GCNGC 2 cut(s) 44, 197
BlsI GCNGC 2 cut(s) 45, 198
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 226, 270
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 227
BseDI CCNNGG 2 cut(s) 226, 270
BseLI CCNNNNNNNGG 2 cut(s) 91, 227
BseXI GCAGC 2 cut(s) 55, 183
BshFI GGCC 2 cut(s) 220, 309
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 20, 226
BslI CCNNNNNNNGG 2 cut(s) 91, 227
BsnI GGCC 2 cut(s) 220, 309
Bsp1286I GDGCHC 2 cut(s) 8, 122
BspACI CCGC 2 cut(s) 110, 276
BspANI GGCC 2 cut(s) 220, 309
BspMAI CTGCAG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 226, 270
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 55, 183
BsuRI GGCC 2 cut(s) 220, 309
BtsIMutI CAGTG 2 cut(s) 218, 261
Cac8I GCNNGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 1 cut(s) 48
CviAII CATG 2 cut(s) 125, 222
CviJI RGCY 5 cut(s) 6, 120, 157, 220, 309
CviKI_1 RGCY 5 cut(s) 6, 120, 157, 220, 309
EaeI YGGCCR 1 cut(s) 307
EciI GGCGGA 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 8, 122
Eco47III AGCGCT 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 8, 122
FaeI CATG 2 cut(s) 128, 225
FaiI YATR 5 cut(s) 126, 223, 302, 304, 337
FatI CATG 2 cut(s) 124, 221
FauNDI CATATG 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 44, 197
FriOI GRGCYC 2 cut(s) 8, 122
Fsp4HI GCNGC 2 cut(s) 44, 197
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 47
GluI GCNGC 2 cut(s) 44, 197
HaeII RGCGCY 1 cut(s) 49
HaeIII GGCC 2 cut(s) 220, 309
HapII CCGG 2 cut(s) 20, 226
HhaI GCGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 128, 225
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HinfI GANTC 2 cut(s) 208, 332
HpaII CCGG 2 cut(s) 20, 226
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 139, 148, 297
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 98, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 128, 225
HspAI GCGC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 5 cut(s) 33, 99, 156, 239, 314
Lsp1109I GCAGC 2 cut(s) 55, 183
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 141
MboII GAAGA 3 cut(s) 48, 60, 113
MhlI GDGCHC 2 cut(s) 8, 122
MluCI AATT 1 cut(s) 166
MnlI CCTC 3 cut(s) 147, 195, 265
MspI CCGG 2 cut(s) 20, 226
MspR9I CCNGG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 227
NdeI CATATG 1 cut(s) 302
NlaIII CATG 2 cut(s) 128, 225
PfeI GAWTC 2 cut(s) 208, 332
PkrI GCNGC 2 cut(s) 45, 198
Psp124BI GAGCTC 1 cut(s) 8
PstI CTGCAG 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 157
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 44, 197
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 8, 122
SetI ASST 4 cut(s) 8, 96, 144, 195
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 166
SsiI CCGC 2 cut(s) 110, 276
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 144
TasI AATT 1 cut(s) 166
TfiI GAWTC 2 cut(s) 208, 332
TscAI CASTG 2 cut(s) 218, 268
TseI GCWGC 2 cut(s) 43, 196
TspDTI ATGAA 2 cut(s) 48, 324
TspRI CASTG 2 cut(s) 218, 268
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.