Rh6BG018900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003902
Physical Location & Seq
Forward (+)
2908355 .. 2913319
4965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG018900.1

Sequence Viewer

Length: 687 bp
ATGAGCTCCAATAAAACTCCGGTTGGGTTTAGGGTTTTGGGGCAGCGTTCACTTTCTTCATCATTTTCTTCTCGCTGTCAAATCCCTGTCAAGGTCGCAGACGATGATGCGGATAAGGTCTCACATGGGTCGCTCTCGGACATTTCAGAACAGAGGCTGAAGCACAATTCTCGAACACCCAAGACAGTTAAGGTGAAGTCGCGGCCATTCTCGTCGTTATTGGATCTGAAAGATCTAAGTGGGTCCACTGATGAGCAAATTGAGGCCAAGAAAGGAGGGGAAGCAGAGAAGAGTTCTGTAGCATTGGCATTTGAAAAATTTAAGCACACTGATATAGGAAAATGGCAATCTCAAGTTTCACAAATTGCTGGTGAAGTAGAATGTCCTGACAAAGATGATTTACCAGAATCAAGAAAAAGGAGACACCCTTGTAAAGATGGGGATGACAAACACACTGCGAGAAAGTATTTTGCAGTTCTTGGAGGTGATCAAAAACCCAAGCTAAAAAAGAGAAGGGCTGAGAGTCTCATAATCCAAGAGAAACCGGGACATGTTTATGATCACTATGAAAATGGTTGTGGCTGGTGGGACTGCAATATGGAGGGTATTGACAATGAAGAAGTTGGTGTCCATGAGGTGTGGGAAGGAGTGGGCTCAACCACATTGGGAGGAATAGAGTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.42

Weight (kDa)

6.76

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 202
AciI CCGC 2 cut(s) 110, 202
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 1 cut(s) 314
AluBI AGCT 2 cut(s) 6, 502
AluI AGCT 2 cut(s) 6, 502
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 124, 415, 530
AlwI GGATC 1 cut(s) 231
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 203, 264
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 243
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 3 cut(s) 205, 383, 497
AvaII GGWCC 1 cut(s) 243
BanII GRGCYC 2 cut(s) 8, 656
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 431
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BclI TGATCA 2 cut(s) 487, 559
BcnI CCSGG 1 cut(s) 546
BcoDI GTCTC 3 cut(s) 124, 415, 530
BfmI CTRYAG 1 cut(s) 297
BglII AGATCT 1 cut(s) 232
BisI GCNGC 2 cut(s) 44, 203
BlsI GCNGC 2 cut(s) 45, 204
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 205, 266
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 20, 545
BslFI GGGAC 2 cut(s) 561, 602
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 3 cut(s) 124, 415, 530
BsmFI GGGAC 2 cut(s) 561, 602
BsnI GGCC 2 cut(s) 205, 266
Bso31I GGTCTC 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 8, 656
Bsp143I GATC 4 cut(s) 223, 232, 487, 559
BspACI CCGC 2 cut(s) 110, 202
BspANI GGCC 2 cut(s) 205, 266
BspCNI CTCAG 1 cut(s) 511
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 231
BspTNI GGTCTC 1 cut(s) 124
BssMI GATC 4 cut(s) 223, 232, 487, 559
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 236, 519
BstF5I GGATG 1 cut(s) 448
BstFNI CGCG 1 cut(s) 202
BstKTI GATC 4 cut(s) 226, 235, 490, 562
BstMAI GTCTC 3 cut(s) 124, 415, 530
BstMBI GATC 4 cut(s) 223, 232, 487, 559
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 544
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 223, 232
BstYI RGATCY 2 cut(s) 223, 232
BsuRI GGCC 2 cut(s) 205, 266
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 246, 327, 453
CaiI CAGNNNCTG 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 243
CviAII CATG 3 cut(s) 125, 551, 632
CviJI RGCY 8 cut(s) 6, 157, 205, 266, 502, 518, 582, 654
CviKI_1 RGCY 8 cut(s) 6, 157, 205, 266, 502, 518, 582, 654
DdeI CTNAG 2 cut(s) 236, 519
DpnI GATC 4 cut(s) 225, 234, 489, 561
DpnII GATC 4 cut(s) 223, 232, 487, 559
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 8, 656
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 8, 656
FaeI CATG 3 cut(s) 128, 554, 635
FaiI YATR 8 cut(s) 126, 335, 530, 552, 558, 567, 599, 633
FaqI GGGAC 2 cut(s) 561, 602
FatI CATG 3 cut(s) 124, 550, 631
FbaI TGATCA 2 cut(s) 487, 559
Fnu4HI GCNGC 2 cut(s) 44, 203
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 2 cut(s) 8, 656
Fsp4HI GCNGC 2 cut(s) 44, 203
GluI GCNGC 2 cut(s) 44, 203
HaeIII GGCC 2 cut(s) 205, 266
HapII CCGG 2 cut(s) 20, 545
Hin1II CATG 3 cut(s) 128, 554, 635
HinfI GANTC 2 cut(s) 407, 523
HpaII CCGG 2 cut(s) 20, 545
HphI GGTGA 3 cut(s) 205, 383, 497
Hpy166II GTNNAC 2 cut(s) 50, 246
Hpy188I TCNGA 3 cut(s) 139, 148, 228
Hpy188III TCNNGA 3 cut(s) 171, 386, 411
Hpy8I GTNNAC 2 cut(s) 50, 246
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 507, 638
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 473, 594
HpyF3I CTNAG 2 cut(s) 236, 519
Hsp92II CATG 3 cut(s) 128, 554, 635
Ksp22I TGATCA 2 cut(s) 487, 559
Kzo9I GATC 4 cut(s) 223, 232, 487, 559
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 7 cut(s) 33, 99, 354, 399, 417, 558, 568
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 97
MalI GATC 4 cut(s) 225, 234, 489, 561
MboI GATC 4 cut(s) 223, 232, 487, 559
MboII GAAGA 4 cut(s) 48, 60, 301, 629
MflI RGATCY 2 cut(s) 223, 232
MhlI GDGCHC 2 cut(s) 8, 656
MluCI AATT 4 cut(s) 166, 258, 317, 363
MlyI GAGTC 1 cut(s) 532
MnlI CCTC 7 cut(s) 147, 256, 269, 476, 595, 628, 662
MseI TTAA 2 cut(s) 189, 321
MslI CAYNNNNRTG 1 cut(s) 555
MspI CCGG 2 cut(s) 20, 545
MspR9I CCNGG 1 cut(s) 546
MvnI CGCG 1 cut(s) 202
NciI CCSGG 1 cut(s) 546
NdeII GATC 4 cut(s) 223, 232, 487, 559
NlaIII CATG 3 cut(s) 128, 554, 635
NlaIV GGNNCC 1 cut(s) 244
NspI RCATGY 1 cut(s) 554
PciI ACATGT 1 cut(s) 550
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 2 cut(s) 45, 204
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
PscI ACATGT 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 223, 232
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 189, 321
SatI GCNGC 2 cut(s) 44, 203
Sau3AI GATC 4 cut(s) 223, 232, 487, 559
Sau96I GGNCC 1 cut(s) 243
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 546
SduI GDGCHC 2 cut(s) 8, 656
SetI ASST 7 cut(s) 8, 96, 120, 195, 487, 504, 639
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 4 cut(s) 166, 258, 317, 363
SsiI CCGC 2 cut(s) 110, 202
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 172
TasI AATT 4 cut(s) 166, 258, 317, 363
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 2 cut(s) 189, 321
Tru9I TTAA 2 cut(s) 189, 321
TscAI CASTG 3 cut(s) 253, 334, 460
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 48, 582, 630
TspRI CASTG 3 cut(s) 253, 334, 460
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.