Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003902

Physical Location & Seq

Genomic Coordinates Forward (+)

396639 .. 400357

Gene Structure 3719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G004200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGCTCAAAGAAAACTCCGCCAAGGTTTAGGGCTGTAGGGCAGCGCTCACTTCCTTCATTATTCTCGTCTTGCTCAAAAAAGTCTGTCAAGGCTGTAGAAGAAGATCCTGATGGGGGCTCGCATGTGCCGCTCTCGGAACGGAAGCCGCACCAGACTGCTGGAAAACCCACGACAGTAAAGGCAAGGTTGAGGCCCTTCTCGTCAATTTTTGGTCTGAGAGATTTAAGTGAGTGCATTGATCATGATGAGCAAATTGAGGCCAAGAAAGGAGGGGAAGCAGAGAAGAATCATGTTGCTGCTTTATTGGCTTTTGAACAATTCAAGCATACTGATCTAGGAAAAGGACATTCTTTATGTCCATCCACAGATGGTGGACGAGAAAGTTCTAACGGAGATGTTGTAGAAGAATCAAGAAAAAGGAGGAACCCTTTTGAAGCTGGGGTTGACAAGCACATTGCAAGAAAGCATTTCACAACACTTGGAGGTGATTCAGAACCCAGCCAGACAAGAAGGAATGAGAGTTTTATAAGCAAGGAGAAACCAGGACCTGTTTATAACTACAGTGGAGGTGGCAAACACACTGTAAGAAAACATTTCACAGTGCTTGGAGGTGATCCAAAACCAAAACCACAAGCCTACCAGAAAAGGAGAAGGAATGAGAGTTTTGTAATCAAGGAGAAAGCAGGACCTGTTTATAATCACTATGCAAATGGCTGTGGCTGGTGGGACTGCGACAGGGAAGGCATTGACAATGAAGAAGTAGGCCTCAATGAGATATGGGAAGGAGTGGGCTCTACCACATTGGGAGGAATAGAATGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

30.45

Weight (kDa)

8.97

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13690
fragaria_vesca	FvH4_4g00420
malus_domestica	MD04G1004500.v1.1
prunus_persica	Prupe.1G004200_v2.0.a1 Prupe.1G004200_v2.0.a1
pyrus_communis	pycom04g00460
rosa_chinensis	RchiOBHm_Chr4g0385541 RchiOBHm_Chr6g0244431
rosa_laevigata	RLG00000010211 RLG00000010214 RLG00000010217 RLG00000010226 RLG00000015361
rosa_multiflora	Rmu_co8490289.1_g000001 Rmu_sc0004773.1_g000001 Rmu_sc0004773.1_g000003 Rmu_sc0008728.1_g000011
rosa_roxburghii	Rroxscaffold_5G00333320 Rroxscaffold_5G00333430 Rroxscaffold_5G00333450 Rroxscaffold_7G00215830
rosa_rugosa	Rorug03G0301200 Rorug03G0301300 Rorug05G0508600
rosa_samantha	Rh4AG004600 Rh4AG005000 Rh4AG005800 Rh4AG006700 Rh4BG004200 Rh4CG007200 Rh4DG006100 Rh6AG023700 Rh6BG018900
rosa_wichuraiana	Rw4G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	530, 558, 699
AccBSI	CCGCTC	1 cut(s)	133
AciI	CCGC	3 cut(s)	20, 131, 149
AclWI	GGATC	2 cut(s)	101, 611
AfeI	AGCGCT	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	317, 325, 437
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	2 cut(s)	6, 440
AluI	AGCT	2 cut(s)	6, 440
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	101, 611
AlwNI	CAGNNNCTG	2 cut(s)	551, 692
Aor51HI	AGCGCT	1 cut(s)	47
AoxI	GGCC	3 cut(s)	194, 261, 766
ApeKI	GCWGC	2 cut(s)	43, 299
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	195, 548, 689
AsuHPI	GGTGA	2 cut(s)	500, 626
AvaII	GGWCC	2 cut(s)	548, 689
BanII	GRGCYC	3 cut(s)	8, 122, 797
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	55, 286
BccI	CCATC	3 cut(s)	107, 365, 370
BciT130I	CCWGG	1 cut(s)	546
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	3 cut(s)	36, 96, 562
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	4 cut(s)	44, 131, 149, 300
BlsI	GCNGC	4 cut(s)	45, 132, 150, 301
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	2 cut(s)	548, 689
BmgT120I	GGNCC	3 cut(s)	195, 548, 689
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	55, 286
BseYI	CCCAGC	2 cut(s)	440, 500
BshFI	GGCC	3 cut(s)	196, 263, 768
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	743
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	743
BsnI	GGCC	3 cut(s)	196, 263, 768
Bsp1286I	GDGCHC	3 cut(s)	8, 122, 797
Bsp143I	GATC	4 cut(s)	106, 241, 334, 616
BspACI	CCGC	3 cut(s)	20, 131, 149
BspANI	GGCC	3 cut(s)	196, 263, 768
BspCNI	CTCAG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	101, 611
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	4 cut(s)	106, 241, 334, 616
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	4 cut(s)	178, 566, 586, 604
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	362
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	4 cut(s)	109, 244, 337, 619
BstMBI	GATC	4 cut(s)	106, 241, 334, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 308
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	3 cut(s)	36, 96, 562
BstV1I	GCAGC	2 cut(s)	55, 286
BstX2I	RGATCY	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	196, 263, 768
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	3 cut(s)	571, 582, 609
Cac8I	GCNNGC	1 cut(s)	122
CaiI	CAGNNNCTG	2 cut(s)	551, 692
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	195, 548, 689
CviAII	CATG	3 cut(s)	125, 245, 293
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	4 cut(s)	108, 243, 336, 618
DpnII	GATC	4 cut(s)	106, 241, 334, 616
EciI	GGCGGA	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	23
Eco147I	AGGCCT	1 cut(s)	768
Eco24I	GRGCYC	3 cut(s)	8, 122, 797
Eco47I	GGWCC	2 cut(s)	548, 689
Eco47III	AGCGCT	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	3 cut(s)	195, 548, 689
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	3 cut(s)	8, 122, 797
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	3 cut(s)	128, 248, 296
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	3 cut(s)	124, 244, 292
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	44, 131, 149, 300
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	3 cut(s)	8, 122, 797
Fsp4HI	GCNGC	4 cut(s)	44, 131, 149, 300
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	4 cut(s)	44, 131, 149, 300
GsaI	CCCAGC	2 cut(s)	444, 504
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	196, 263, 768
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	128, 248, 296
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	289, 410, 491
HphI	GGTGA	2 cut(s)	500, 626
Hpy166II	GTNNAC	2 cut(s)	377, 448
Hpy188I	TCNGA	3 cut(s)	139, 219, 496
Hpy188III	TCNNGA	3 cut(s)	110, 245, 414
Hpy8I	GTNNAC	2 cut(s)	377, 448
HpyAV	CCTTC	6 cut(s)	66, 208, 507, 648, 737, 779
HpyCH4III	ACNGT	4 cut(s)	178, 566, 586, 604
HpyCH4V	TGCA	3 cut(s)	237, 461, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 308
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	128, 248, 296
HspAI	GCGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	106, 241, 334, 616
Lsp1109I	GCAGC	2 cut(s)	55, 286
MaeI	CTAG	1 cut(s)	338
MalI	GATC	4 cut(s)	108, 243, 336, 618
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	4 cut(s)	106, 241, 334, 616
MboII	GAAGA	5 cut(s)	113, 116, 298, 419, 770
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	3 cut(s)	8, 122, 797
MluCI	AATT	3 cut(s)	207, 255, 320
MnlI	CCTC	9 cut(s)	186, 253, 266, 417, 479, 563, 605, 779, 803
MseI	TTAA	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	2 cut(s)	130, 308
NdeII	GATC	4 cut(s)	106, 241, 334, 616
NlaIII	CATG	3 cut(s)	128, 248, 296
NlaIV	GGNNCC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	128
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	768
PfeI	GAWTC	3 cut(s)	289, 410, 491
PkrI	GCNGC	4 cut(s)	45, 132, 150, 301
PpuMI	RGGWCCY	2 cut(s)	548, 689
PsiI	TTATAA	3 cut(s)	530, 558, 699
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	2 cut(s)	548, 689
Psp6I	CCWGG	1 cut(s)	544
PspFI	CCCAGC	2 cut(s)	440, 500
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	3 cut(s)	195, 548, 689
PspPPI	RGGWCCY	2 cut(s)	548, 689
PstNI	CAGNNNCTG	2 cut(s)	551, 692
PsuI	RGATCY	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	4 cut(s)	44, 131, 149, 300
Sau3AI	GATC	4 cut(s)	106, 241, 334, 616
Sau96I	GGNCC	3 cut(s)	195, 548, 689
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	3 cut(s)	8, 122, 797
SetI	ASST	9 cut(s)	8, 29, 191, 442, 490, 553, 574, 616, 694
SfcI	CTRYAG	3 cut(s)	36, 96, 562
SinI	GGWCC	2 cut(s)	548, 689
Sse9I	AATT	3 cut(s)	207, 255, 320
SseBI	AGGCCT	1 cut(s)	768
SsiI	CCGC	3 cut(s)	20, 131, 149
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	768
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	4 cut(s)	178, 566, 586, 604
TasI	AATT	3 cut(s)	207, 255, 320
TauI	GCSGC	2 cut(s)	133, 151
TfiI	GAWTC	3 cut(s)	289, 410, 491
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	3 cut(s)	571, 589, 609
TseI	GCWGC	2 cut(s)	43, 299
TspDTI	ATGAA	2 cut(s)	48, 771
TspGWI	ACGGA	2 cut(s)	157, 408
TspRI	CASTG	3 cut(s)	571, 589, 609
VpaK11BI	GGWCC	2 cut(s)	548, 689
XceI	RCATGY	1 cut(s)	128
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.