Pentatricopeptide repeat-containing protein At4g14190
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14190 |
| fragaria_vesca | FvH4_4g12861 FvH4_4g12861 |
| malus_domestica | MD04G1021700.v1.1 |
| prunus_persica | Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1 |
| pyrus_communis | pycom04g01780 pycom07g00080 |
| rosa_chinensis | RchiOBHm_Chr4g0412521 |
| rosa_laevigata | RLG00000008282 RLG00000008292 |
| rosa_multiflora | Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740 |
| rosa_rugosa | Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200 |
| rosa_samantha | Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200 |
| rosa_wichuraiana | Rw4G014570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 413, 720, 896 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| AccBSI | CCGCTC | 1 cut(s) | 138 |
| AccII | CGCG | 3 cut(s) | 167, 382, 735 |
| AccIII | TCCGGA | 1 cut(s) | 1209 |
| AciI | CCGC | 3 cut(s) | 133, 136, 223 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AcuI | CTGAAG | 2 cut(s) | 68, 245 |
| AfaI | GTAC | 2 cut(s) | 1426, 1500 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 295, 750 |
| AflII | CTTAAG | 2 cut(s) | 674, 758 |
| AflIII | ACRYGT | 2 cut(s) | 881, 1219 |
| AgeI | ACCGGT | 1 cut(s) | 198 |
| AgsI | TTSAA | 7 cut(s) | 79, 516, 571, 629, 839, 866, 956 |
| AhlI | ACTAGT | 1 cut(s) | 1474 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 791, 823 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 545, 577 |
| Alw21I | GWGCWC | 1 cut(s) | 1209 |
| Alw26I | GTCTC | 5 cut(s) | 602, 967, 1043, 1422, 1425 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1395 |
| Ama87I | CYCGRG | 2 cut(s) | 744, 970 |
| Aor13HI | TCCGGA | 1 cut(s) | 1209 |
| AoxI | GGCC | 1 cut(s) | 297 |
| ApeKI | GCWGC | 1 cut(s) | 1364 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1336, 1368 |
| AsiGI | ACCGGT | 1 cut(s) | 198 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 450 |
| AspLEI | GCGC | 1 cut(s) | 22 |
| AspS9I | GGNCC | 1 cut(s) | 297 |
| AvaI | CYCGRG | 2 cut(s) | 744, 970 |
| BanII | GRGCYC | 1 cut(s) | 1209 |
| BauI | CACGAG | 2 cut(s) | 335, 1180 |
| BbsI | GAAGAC | 1 cut(s) | 1349 |
| Bbv12I | GWGCWC | 1 cut(s) | 1209 |
| BbvI | GCAGC | 1 cut(s) | 1351 |
| BccI | CCATC | 7 cut(s) | 263, 533, 611, 686, 865, 1096, 1162 |
| BceAI | ACGGC | 5 cut(s) | 33, 236, 269, 284, 1297 |
| BclI | TGATCA | 2 cut(s) | 478, 706 |
| BcoDI | GTCTC | 5 cut(s) | 602, 967, 1043, 1422, 1425 |
| BcuI | ACTAGT | 1 cut(s) | 1474 |
| BfaI | CTAG | 5 cut(s) | 117, 1008, 1113, 1272, 1475 |
| BfmI | CTRYAG | 1 cut(s) | 1242 |
| BfrI | CTTAAG | 2 cut(s) | 674, 758 |
| BisI | GCNGC | 3 cut(s) | 136, 224, 1365 |
| BlsI | GCNGC | 3 cut(s) | 137, 225, 1366 |
| BmeT110I | CYCGRG | 2 cut(s) | 744, 970 |
| BmgT120I | GGNCC | 1 cut(s) | 297 |
| BmiI | GGNNCC | 1 cut(s) | 813 |
| BpiI | GAAGAC | 1 cut(s) | 1349 |
| BpmI | CTGGAG | 1 cut(s) | 1308 |
| BpuEI | CTTGAG | 4 cut(s) | 67, 310, 392, 1282 |
| Bsa29I | ATCGAT | 1 cut(s) | 437 |
| BsaAI | YACGTR | 1 cut(s) | 360 |
| BsaJI | CCNNGG | 3 cut(s) | 68, 745, 1121 |
| BsaWI | WCCGGW | 3 cut(s) | 198, 236, 1209 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 761, 791, 866, 896 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 295, 750 |
| Bse118I | RCCGGY | 1 cut(s) | 198 |
| Bse1I | ACTGG | 3 cut(s) | 1291, 1414, 1459 |
| BseAI | TCCGGA | 1 cut(s) | 1209 |
| BseCI | ATCGAT | 1 cut(s) | 437 |
| BseDI | CCNNGG | 3 cut(s) | 68, 745, 1121 |
| BseGI | GGATG | 2 cut(s) | 274, 922 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 295, 750 |
| BseMII | CTCAG | 5 cut(s) | 220, 241, 1054, 1194, 1402 |
| BseNI | ACTGG | 3 cut(s) | 1291, 1414, 1459 |
| BseRI | GAGGAG | 3 cut(s) | 51, 54, 762 |
| BseXI | GCAGC | 1 cut(s) | 1351 |
| Bsh1236I | CGCG | 3 cut(s) | 167, 382, 735 |
| BshFI | GGCC | 1 cut(s) | 299 |
| BshTI | ACCGGT | 1 cut(s) | 198 |
| BshVI | ATCGAT | 1 cut(s) | 437 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1209 |
| BsiHKCI | CYCGRG | 2 cut(s) | 744, 970 |
| BsiSI | CCGG | 3 cut(s) | 199, 237, 1210 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 295, 750 |
| BsmAI | GTCTC | 5 cut(s) | 602, 967, 1043, 1422, 1425 |
| BsmBI | CGTCTC | 1 cut(s) | 1425 |
| BsnI | GGCC | 1 cut(s) | 299 |
| BsoBI | CYCGRG | 2 cut(s) | 744, 970 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1209 |
| Bsp13I | TCCGGA | 1 cut(s) | 1209 |
| Bsp143I | GATC | 3 cut(s) | 478, 706, 1231 |
| Bsp19I | CCATGG | 1 cut(s) | 68 |
| Bsp68I | TCGCGA | 1 cut(s) | 382 |
| BspACI | CCGC | 3 cut(s) | 133, 136, 223 |
| BspANI | GGCC | 1 cut(s) | 299 |
| BspCNI | CTCAG | 5 cut(s) | 219, 240, 1053, 1195, 1401 |
| BspDI | ATCGAT | 1 cut(s) | 437 |
| BspEI | TCCGGA | 1 cut(s) | 1209 |
| BspFNI | CGCG | 3 cut(s) | 167, 382, 735 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspLI | GGNNCC | 1 cut(s) | 813 |
| BspTI | CTTAAG | 2 cut(s) | 674, 758 |
| BsrBI | CCGCTC | 1 cut(s) | 138 |
| BsrFI | RCCGGY | 1 cut(s) | 198 |
| BsrI | ACTGG | 3 cut(s) | 1291, 1414, 1459 |
| BssAI | RCCGGY | 1 cut(s) | 198 |
| BssECI | CCNNGG | 3 cut(s) | 68, 745, 1121 |
| BssMI | GATC | 3 cut(s) | 478, 706, 1231 |
| BssSI | CACGAG | 2 cut(s) | 335, 1180 |
| BssT1I | CCWWGG | 2 cut(s) | 68, 1121 |
| Bst2BI | CACGAG | 2 cut(s) | 335, 1180 |
| Bst4CI | ACNGT | 2 cut(s) | 1243, 1498 |
| Bst6I | CTCTTC | 1 cut(s) | 189 |
| BstAFI | CTTAAG | 2 cut(s) | 674, 758 |
| BstBAI | YACGTR | 1 cut(s) | 360 |
| BstDEI | CTNAG | 7 cut(s) | 206, 227, 488, 1040, 1203, 1388, 1503 |
| BstDSI | CCRYGG | 1 cut(s) | 68 |
| BstF5I | GGATG | 2 cut(s) | 274, 922 |
| BstFNI | CGCG | 3 cut(s) | 167, 382, 735 |
| BstHHI | GCGC | 1 cut(s) | 22 |
| BstKTI | GATC | 3 cut(s) | 481, 709, 1234 |
| BstMAI | GTCTC | 5 cut(s) | 602, 967, 1043, 1422, 1425 |
| BstMBI | GATC | 3 cut(s) | 478, 706, 1231 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 455, 1145, 1154 |
| BstNSI | RCATGY | 1 cut(s) | 1223 |
| BstSFI | CTRYAG | 1 cut(s) | 1242 |
| BstUI | CGCG | 3 cut(s) | 167, 382, 735 |
| BstV1I | GCAGC | 1 cut(s) | 1351 |
| BstV2I | GAAGAC | 1 cut(s) | 1349 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1421 |
| Bsu15I | ATCGAT | 1 cut(s) | 437 |
| BsuRI | GGCC | 1 cut(s) | 299 |
| BsuTUI | ATCGAT | 1 cut(s) | 437 |
| BtgI | CCRYGG | 1 cut(s) | 68 |
| BtsCI | GGATG | 2 cut(s) | 274, 922 |
| BtsIMutI | CAGTG | 1 cut(s) | 1284 |
| BtuMI | TCGCGA | 1 cut(s) | 382 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1395 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 1 cut(s) | 22 |
| Cfr10I | RCCGGY | 1 cut(s) | 198 |
| Cfr13I | GGNCC | 1 cut(s) | 297 |
| ClaI | ATCGAT | 1 cut(s) | 437 |
| CseI | GACGC | 2 cut(s) | 49, 173 |
| Csp6I | GTAC | 2 cut(s) | 1425, 1499 |
| CspAI | ACCGGT | 1 cut(s) | 198 |
| CviAII | CATG | 8 cut(s) | 69, 482, 710, 964, 1055, 1220, 1361, 1449 |
| CviQI | GTAC | 2 cut(s) | 1425, 1499 |
| DdeI | CTNAG | 7 cut(s) | 206, 227, 488, 1040, 1203, 1388, 1503 |
| DpnI | GATC | 3 cut(s) | 480, 708, 1233 |
| DpnII | GATC | 3 cut(s) | 478, 706, 1231 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| Eam1104I | CTCTTC | 1 cut(s) | 189 |
| EarI | CTCTTC | 1 cut(s) | 189 |
| EciI | GGCGGA | 1 cut(s) | 122 |
| Ecl136II | GAGCTC | 1 cut(s) | 1207 |
| Eco130I | CCWWGG | 2 cut(s) | 68, 1121 |
| Eco24I | GRGCYC | 1 cut(s) | 1209 |
| Eco53kI | GAGCTC | 1 cut(s) | 1207 |
| Eco57I | CTGAAG | 2 cut(s) | 68, 245 |
| Eco88I | CYCGRG | 2 cut(s) | 744, 970 |
| EcoICRI | GAGCTC | 1 cut(s) | 1207 |
| EcoT14I | CCWWGG | 2 cut(s) | 68, 1121 |
| EcoT38I | GRGCYC | 1 cut(s) | 1209 |
| ErhI | CCWWGG | 2 cut(s) | 68, 1121 |
| Esp3I | CGTCTC | 1 cut(s) | 1425 |
| FaeI | CATG | 8 cut(s) | 72, 485, 713, 967, 1058, 1223, 1364, 1452 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 481, 513 |
| FatI | CATG | 8 cut(s) | 68, 481, 709, 963, 1054, 1219, 1360, 1448 |
| FauNDI | CATATG | 2 cut(s) | 576, 634 |
| FbaI | TGATCA | 2 cut(s) | 478, 706 |
| Fnu4HI | GCNGC | 3 cut(s) | 136, 224, 1365 |
| FokI | GGATG | 2 cut(s) | 281, 929 |
| FriOI | GRGCYC | 1 cut(s) | 1209 |
| Fsp4HI | GCNGC | 3 cut(s) | 136, 224, 1365 |
| FspBI | CTAG | 5 cut(s) | 117, 1008, 1113, 1272, 1475 |
| GlaI | GCGC | 1 cut(s) | 21 |
| GluI | GCNGC | 3 cut(s) | 136, 224, 1365 |
| GsuI | CTGGAG | 1 cut(s) | 1308 |
| HaeIII | GGCC | 1 cut(s) | 299 |
| HapII | CCGG | 3 cut(s) | 199, 237, 1210 |
| HgaI | GACGC | 2 cut(s) | 49, 173 |
| HhaI | GCGC | 1 cut(s) | 22 |
| Hin1II | CATG | 8 cut(s) | 72, 485, 713, 967, 1058, 1223, 1364, 1452 |
| Hin6I | GCGC | 1 cut(s) | 20 |
| HinP1I | GCGC | 1 cut(s) | 20 |
| HindIII | AAGCTT | 3 cut(s) | 85, 840, 1226 |
| HinfI | GANTC | 9 cut(s) | 7, 330, 340, 367, 571, 686, 1069, 1439, 1486 |
| HpaII | CCGG | 3 cut(s) | 199, 237, 1210 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 691, 783, 1074, 1204, 1491 |
| Hpy99I | CGWCG | 4 cut(s) | 19, 43, 167, 1283 |
| HpyAV | CCTTC | 4 cut(s) | 132, 387, 574, 825 |
| HpyCH4III | ACNGT | 2 cut(s) | 1243, 1498 |
| HpyCH4IV | ACGT | 3 cut(s) | 359, 821, 881 |
| HpyCH4V | TGCA | 1 cut(s) | 848 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 455, 1145, 1154 |
| HpyF3I | CTNAG | 7 cut(s) | 206, 227, 488, 1040, 1203, 1388, 1503 |
| HpySE526I | ACGT | 3 cut(s) | 359, 821, 881 |
| Hsp92II | CATG | 8 cut(s) | 72, 485, 713, 967, 1058, 1223, 1364, 1452 |
| HspAI | GCGC | 1 cut(s) | 20 |
| Kpn2I | TCCGGA | 1 cut(s) | 1209 |
| Ksp22I | TGATCA | 2 cut(s) | 478, 706 |
| Kzo9I | GATC | 3 cut(s) | 478, 706, 1231 |
| LmnI | GCTCC | 5 cut(s) | 279, 769, 811, 1212, 1392 |
| Lsp1109I | GCAGC | 1 cut(s) | 1351 |
| MaeI | CTAG | 5 cut(s) | 117, 1008, 1113, 1272, 1475 |
| MaeII | ACGT | 3 cut(s) | 359, 821, 881 |
| MaeIII | GTNAC | 5 cut(s) | 594, 712, 884, 1194, 1237 |
| MalI | GATC | 3 cut(s) | 480, 708, 1233 |
| MbiI | CCGCTC | 1 cut(s) | 138 |
| MboI | GATC | 3 cut(s) | 478, 706, 1231 |
| MhlI | GDGCHC | 1 cut(s) | 1209 |
| MluCI | AATT | 8 cut(s) | 23, 73, 397, 450, 511, 861, 935, 1248 |
| MlyI | GAGTC | 2 cut(s) | 324, 1078 |
| MmeI | TCCRAC | 1 cut(s) | 1052 |
| MroI | TCCGGA | 1 cut(s) | 1209 |
| MroXI | GAANNNNTTC | 1 cut(s) | 450 |
| MseI | TTAA | 4 cut(s) | 675, 759, 1095, 1482 |
| MslI | CAYNNNNRTG | 1 cut(s) | 528 |
| MspCI | CTTAAG | 2 cut(s) | 674, 758 |
| MspI | CCGG | 3 cut(s) | 199, 237, 1210 |
| MvnI | CGCG | 3 cut(s) | 167, 382, 735 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 455, 1145, 1154 |
| NcoI | CCATGG | 1 cut(s) | 68 |
| NdeI | CATATG | 2 cut(s) | 576, 634 |
| NdeII | GATC | 3 cut(s) | 478, 706, 1231 |
| NlaIII | CATG | 8 cut(s) | 72, 485, 713, 967, 1058, 1223, 1364, 1452 |
| NlaIV | GGNNCC | 1 cut(s) | 813 |
| NruI | TCGCGA | 1 cut(s) | 382 |
| NspI | RCATGY | 1 cut(s) | 1223 |
| PaeR7I | CTCGAG | 1 cut(s) | 970 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PciI | ACATGT | 1 cut(s) | 1219 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 313, 460 |
| PdmI | GAANNNNTTC | 1 cut(s) | 450 |
| PfeI | GAWTC | 7 cut(s) | 7, 340, 367, 571, 686, 1439, 1486 |
| PinAI | ACCGGT | 1 cut(s) | 198 |
| PkrI | GCNGC | 3 cut(s) | 137, 225, 1366 |
| PleI | GAGTC | 2 cut(s) | 324, 1077 |
| PpsI | GAGTC | 2 cut(s) | 324, 1077 |
| Ppu21I | YACGTR | 1 cut(s) | 360 |
| PscI | ACATGT | 1 cut(s) | 1219 |
| PsiI | TTATAA | 3 cut(s) | 413, 720, 896 |
| Psp124BI | GAGCTC | 1 cut(s) | 1209 |
| PspN4I | GGNNCC | 1 cut(s) | 813 |
| PspPI | GGNCC | 1 cut(s) | 297 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1395 |
| RruI | TCGCGA | 1 cut(s) | 382 |
| RsaI | GTAC | 2 cut(s) | 1426, 1500 |
| RsaNI | GTAC | 2 cut(s) | 1425, 1499 |
| RseI | CAYNNNNRTG | 1 cut(s) | 528 |
| SacI | GAGCTC | 1 cut(s) | 1209 |
| SaqAI | TTAA | 4 cut(s) | 675, 759, 1095, 1482 |
| SatI | GCNGC | 3 cut(s) | 136, 224, 1365 |
| Sau3AI | GATC | 3 cut(s) | 478, 706, 1231 |
| Sau96I | GGNCC | 1 cut(s) | 297 |
| SchI | GAGTC | 2 cut(s) | 324, 1078 |
| SduI | GDGCHC | 1 cut(s) | 1209 |
| SfcI | CTRYAG | 1 cut(s) | 1242 |
| Sfr274I | CTCGAG | 1 cut(s) | 970 |
| SlaI | CTCGAG | 1 cut(s) | 970 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 528 |
| SmlI | CTYRAG | 7 cut(s) | 82, 325, 371, 674, 758, 970, 1261 |
| SmoI | CTYRAG | 7 cut(s) | 82, 325, 371, 674, 758, 970, 1261 |
| SpeI | ACTAGT | 1 cut(s) | 1474 |
| Sse9I | AATT | 8 cut(s) | 23, 73, 397, 450, 511, 861, 935, 1248 |
| SsiI | CCGC | 3 cut(s) | 133, 136, 223 |
| SspMI | CTAG | 5 cut(s) | 117, 1008, 1113, 1272, 1475 |
| SstI | GAGCTC | 1 cut(s) | 1209 |
| StyI | CCWWGG | 2 cut(s) | 68, 1121 |
| TaaI | ACNGT | 2 cut(s) | 1243, 1498 |
| TaiI | ACGT | 3 cut(s) | 362, 824, 884 |
| TaqI | TCGA | 7 cut(s) | 110, 437, 454, 794, 971, 1278, 1442 |
| TasI | AATT | 8 cut(s) | 23, 73, 397, 450, 511, 861, 935, 1248 |
| TauI | GCSGC | 2 cut(s) | 138, 226 |
| TfiI | GAWTC | 7 cut(s) | 7, 340, 367, 571, 686, 1439, 1486 |
| Tru1I | TTAA | 4 cut(s) | 675, 759, 1095, 1482 |
| Tru9I | TTAA | 4 cut(s) | 675, 759, 1095, 1482 |
| TscAI | CASTG | 1 cut(s) | 1291 |
| TseI | GCWGC | 1 cut(s) | 1364 |
| TspDTI | ATGAA | 4 cut(s) | 201, 593, 1349, 1355 |
| TspGWI | ACGGA | 4 cut(s) | 305, 483, 620, 1449 |
| TspRI | CASTG | 1 cut(s) | 1291 |
| Vha464I | CTTAAG | 2 cut(s) | 674, 758 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XbaI | TCTAGA | 1 cut(s) | 1007 |
| XceI | RCATGY | 1 cut(s) | 1223 |
| XhoI | CTCGAG | 1 cut(s) | 970 |
| XmnI | GAANNNNTTC | 1 cut(s) | 450 |
| XspI | CTAG | 5 cut(s) | 117, 1008, 1113, 1272, 1475 |