AT4G14190

Pentatricopeptide repeat-containing protein At4g14190

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
8183227 .. 8185202
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14190.1

Sequence Viewer

Length: 1506 bp
ATGGAGAATCTGACGACGGCGCAATTTCTCCACAGAGCGACGCTACTGAAGAAGCCACCTCCTCCTCCATGGAATTTGAACTCAAGCTTTCTCACATCTACCTCCTATTCGATACCTAGACCTTCTTCTCTCCGCCGCTCTTTGCCCTTGTCTATCAATGGCGACGCGACACAGCCCACCTCTCTTCTCCACCACCACCGGTTTCTCAGTTCATTGACACGGCGGCTCAGTCTTTCCGGTTCGTGTCCTCTACGGCTTCTTCAGGAGGATGGAGATTGGAGCAAAGACCATTTCTGGGCCGTTATTCGTTTTCTCCGTCAGTCCTCAAGACTCCACGAGATTCTTCCTGTTTTTGATACGTGGAAGAATCTTGAGCCTTCGCGAATAAGTGAGAACAATTACGAAAGGATTATAAGGTTTTTATGTGAGGAAAAATCGATGAGTGAAGCAATTCGAGCTTTTCGTAGTATGATTGATGATCATGAGCTAAGTCCGTCTTTAGAAATCTATAATTCAATCATACATAGTTATGCTGATGATGGGAAGTTTGAGGAAGCTATGTTCTACTTGAATCATATGAAGGAGAATGGTCTGTTACCGATAACGGAGACATACGATGGATTGATTGAAGCATATGGTAAATGGAAAATGTATGATGAGATTGTTTTGTGTCTTAAGAGAATGGAATCTGATGGTTGTGTGCGTGATCATGTTACTTATAATCTACTCATACGCGAGTTTTCCCGAGGAGGGTTGCTTAAGAGAATGGAGCAAATGTATCAGAGTTTGATGTCGAGGAAGATGACTTTGGAGCCTTCTACGTTGTTGTCTATGCTTGAAGCTTATGCAGAGTTTGGGCTAATTGAAAAGATGGAGGAAACGTGTAACAAGATTATAAGGTTTGGGATTTCTTTGGATGAGGGTTTAGTTAGGAAATTAGCTAATGTTTATATTGAAAACCTCATGTTCTCGAGACTTGATGATTTGGGTCGTGGCATTTCTGCTTCTAGAACCCGTAGGACTGAACTTGCTTGGTGTCTCAGGCTTCTGTGTCATGCCCGACTTGTGAGTCGGAAAGGTTTGGATTATGTTGTTAAAGAGATGGAAGAAGCTAGAGTTCCTTGGAATACAACTTTTGCCAATATCGCACTTTTAGCTTACTCAAAGATGGGAGATTTCACGAGCATTGAGCTGTTACTCTCTGAGCTCCGGATAAAACATGTGAAGCTTGATCTTGTAACTGTAGGAATTGTCTTTGACTTGAGTGAAGCTAGGTTCGACGGCACTGGAGTTTTTATGACTTGGAAAAAGATTGGGTTTCTTGATAAGCCTGTGGAAATGAAGACAGACCCTTTGGTTCATGCTGCTTTTGGTAAGGGGCAGTTTCTCAGGAGCTGTGAAGAAGTGAAGAACCAGTCTCTTGGTACGAGAGACGGAGAATCGAAGTCATGGACTTACCAGTATCTAATGGAACTAGTGGTTAAGAATCAGAAAACTGTACCTTAG

Protein Analysis

501

Amino Acids

57.9

Weight (kDa)

8.02

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 159 - 214 9.5e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 166 - 213 2.5e-07 PPR repeat family
PPR PF01535 169 - 198 3.8e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 413, 720, 896
AasI GACNNNNNNGTC 1 cut(s) 1068
AccBSI CCGCTC 1 cut(s) 138
AccII CGCG 3 cut(s) 167, 382, 735
AccIII TCCGGA 1 cut(s) 1209
AciI CCGC 3 cut(s) 133, 136, 223
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 68, 245
AfaI GTAC 2 cut(s) 1426, 1500
AfiI CCNNNNNNNGG 2 cut(s) 295, 750
AflII CTTAAG 2 cut(s) 674, 758
AflIII ACRYGT 2 cut(s) 881, 1219
AgeI ACCGGT 1 cut(s) 198
AgsI TTSAA 7 cut(s) 79, 516, 571, 629, 839, 866, 956
AhlI ACTAGT 1 cut(s) 1474
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AloI GAACNNNNNNTCC 2 cut(s) 545, 577
Alw21I GWGCWC 1 cut(s) 1209
Alw26I GTCTC 5 cut(s) 602, 967, 1043, 1422, 1425
AlwNI CAGNNNCTG 1 cut(s) 1395
Ama87I CYCGRG 2 cut(s) 744, 970
Aor13HI TCCGGA 1 cut(s) 1209
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 1364
ApoI RAATTY 1 cut(s) 73
ArsI GACNNNNNNTTYG 2 cut(s) 1336, 1368
AsiGI ACCGGT 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 297
AvaI CYCGRG 2 cut(s) 744, 970
BanII GRGCYC 1 cut(s) 1209
BauI CACGAG 2 cut(s) 335, 1180
BbsI GAAGAC 1 cut(s) 1349
Bbv12I GWGCWC 1 cut(s) 1209
BbvI GCAGC 1 cut(s) 1351
BccI CCATC 7 cut(s) 263, 533, 611, 686, 865, 1096, 1162
BceAI ACGGC 5 cut(s) 33, 236, 269, 284, 1297
BclI TGATCA 2 cut(s) 478, 706
BcoDI GTCTC 5 cut(s) 602, 967, 1043, 1422, 1425
BcuI ACTAGT 1 cut(s) 1474
BfaI CTAG 5 cut(s) 117, 1008, 1113, 1272, 1475
BfmI CTRYAG 1 cut(s) 1242
BfrI CTTAAG 2 cut(s) 674, 758
BisI GCNGC 3 cut(s) 136, 224, 1365
BlsI GCNGC 3 cut(s) 137, 225, 1366
BmeT110I CYCGRG 2 cut(s) 744, 970
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 1349
BpmI CTGGAG 1 cut(s) 1308
BpuEI CTTGAG 4 cut(s) 67, 310, 392, 1282
Bsa29I ATCGAT 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 68, 745, 1121
BsaWI WCCGGW 3 cut(s) 198, 236, 1209
BsaXI ACNNNNNCTCC 4 cut(s) 761, 791, 866, 896
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 750
Bse118I RCCGGY 1 cut(s) 198
Bse1I ACTGG 3 cut(s) 1291, 1414, 1459
BseAI TCCGGA 1 cut(s) 1209
BseCI ATCGAT 1 cut(s) 437
BseDI CCNNGG 3 cut(s) 68, 745, 1121
BseGI GGATG 2 cut(s) 274, 922
BseLI CCNNNNNNNGG 2 cut(s) 295, 750
BseMII CTCAG 5 cut(s) 220, 241, 1054, 1194, 1402
BseNI ACTGG 3 cut(s) 1291, 1414, 1459
BseRI GAGGAG 3 cut(s) 51, 54, 762
BseXI GCAGC 1 cut(s) 1351
Bsh1236I CGCG 3 cut(s) 167, 382, 735
BshFI GGCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 1209
BsiHKCI CYCGRG 2 cut(s) 744, 970
BsiSI CCGG 3 cut(s) 199, 237, 1210
BslI CCNNNNNNNGG 2 cut(s) 295, 750
BsmAI GTCTC 5 cut(s) 602, 967, 1043, 1422, 1425
BsmBI CGTCTC 1 cut(s) 1425
BsnI GGCC 1 cut(s) 299
BsoBI CYCGRG 2 cut(s) 744, 970
Bsp1286I GDGCHC 1 cut(s) 1209
Bsp13I TCCGGA 1 cut(s) 1209
Bsp143I GATC 3 cut(s) 478, 706, 1231
Bsp19I CCATGG 1 cut(s) 68
Bsp68I TCGCGA 1 cut(s) 382
BspACI CCGC 3 cut(s) 133, 136, 223
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 5 cut(s) 219, 240, 1053, 1195, 1401
BspDI ATCGAT 1 cut(s) 437
BspEI TCCGGA 1 cut(s) 1209
BspFNI CGCG 3 cut(s) 167, 382, 735
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 813
BspTI CTTAAG 2 cut(s) 674, 758
BsrBI CCGCTC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 198
BsrI ACTGG 3 cut(s) 1291, 1414, 1459
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 68, 745, 1121
BssMI GATC 3 cut(s) 478, 706, 1231
BssSI CACGAG 2 cut(s) 335, 1180
BssT1I CCWWGG 2 cut(s) 68, 1121
Bst2BI CACGAG 2 cut(s) 335, 1180
Bst4CI ACNGT 2 cut(s) 1243, 1498
Bst6I CTCTTC 1 cut(s) 189
BstAFI CTTAAG 2 cut(s) 674, 758
BstBAI YACGTR 1 cut(s) 360
BstDEI CTNAG 7 cut(s) 206, 227, 488, 1040, 1203, 1388, 1503
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 274, 922
BstFNI CGCG 3 cut(s) 167, 382, 735
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 481, 709, 1234
BstMAI GTCTC 5 cut(s) 602, 967, 1043, 1422, 1425
BstMBI GATC 3 cut(s) 478, 706, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 455, 1145, 1154
BstNSI RCATGY 1 cut(s) 1223
BstSFI CTRYAG 1 cut(s) 1242
BstUI CGCG 3 cut(s) 167, 382, 735
BstV1I GCAGC 1 cut(s) 1351
BstV2I GAAGAC 1 cut(s) 1349
BstXI CCANNNNNNTGG 1 cut(s) 1421
Bsu15I ATCGAT 1 cut(s) 437
BsuRI GGCC 1 cut(s) 299
BsuTUI ATCGAT 1 cut(s) 437
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 274, 922
BtsIMutI CAGTG 1 cut(s) 1284
BtuMI TCGCGA 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 1395
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 297
ClaI ATCGAT 1 cut(s) 437
CseI GACGC 2 cut(s) 49, 173
Csp6I GTAC 2 cut(s) 1425, 1499
CspAI ACCGGT 1 cut(s) 198
CviAII CATG 8 cut(s) 69, 482, 710, 964, 1055, 1220, 1361, 1449
CviQI GTAC 2 cut(s) 1425, 1499
DdeI CTNAG 7 cut(s) 206, 227, 488, 1040, 1203, 1388, 1503
DpnI GATC 3 cut(s) 480, 708, 1233
DpnII GATC 3 cut(s) 478, 706, 1231
DrdI GACNNNNNNGTC 1 cut(s) 1068
DseDI GACNNNNNNGTC 1 cut(s) 1068
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 1207
Eco130I CCWWGG 2 cut(s) 68, 1121
Eco24I GRGCYC 1 cut(s) 1209
Eco53kI GAGCTC 1 cut(s) 1207
Eco57I CTGAAG 2 cut(s) 68, 245
Eco88I CYCGRG 2 cut(s) 744, 970
EcoICRI GAGCTC 1 cut(s) 1207
EcoT14I CCWWGG 2 cut(s) 68, 1121
EcoT38I GRGCYC 1 cut(s) 1209
ErhI CCWWGG 2 cut(s) 68, 1121
Esp3I CGTCTC 1 cut(s) 1425
FaeI CATG 8 cut(s) 72, 485, 713, 967, 1058, 1223, 1364, 1452
FalI AAGNNNNNCTT 2 cut(s) 481, 513
FatI CATG 8 cut(s) 68, 481, 709, 963, 1054, 1219, 1360, 1448
FauNDI CATATG 2 cut(s) 576, 634
FbaI TGATCA 2 cut(s) 478, 706
Fnu4HI GCNGC 3 cut(s) 136, 224, 1365
FokI GGATG 2 cut(s) 281, 929
FriOI GRGCYC 1 cut(s) 1209
Fsp4HI GCNGC 3 cut(s) 136, 224, 1365
FspBI CTAG 5 cut(s) 117, 1008, 1113, 1272, 1475
GlaI GCGC 1 cut(s) 21
GluI GCNGC 3 cut(s) 136, 224, 1365
GsuI CTGGAG 1 cut(s) 1308
HaeIII GGCC 1 cut(s) 299
HapII CCGG 3 cut(s) 199, 237, 1210
HgaI GACGC 2 cut(s) 49, 173
HhaI GCGC 1 cut(s) 22
Hin1II CATG 8 cut(s) 72, 485, 713, 967, 1058, 1223, 1364, 1452
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HindIII AAGCTT 3 cut(s) 85, 840, 1226
HinfI GANTC 9 cut(s) 7, 330, 340, 367, 571, 686, 1069, 1439, 1486
HpaII CCGG 3 cut(s) 199, 237, 1210
Hpy188I TCNGA 6 cut(s) 12, 691, 783, 1074, 1204, 1491
Hpy99I CGWCG 4 cut(s) 19, 43, 167, 1283
HpyAV CCTTC 4 cut(s) 132, 387, 574, 825
HpyCH4III ACNGT 2 cut(s) 1243, 1498
HpyCH4IV ACGT 3 cut(s) 359, 821, 881
HpyCH4V TGCA 1 cut(s) 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 1145, 1154
HpyF3I CTNAG 7 cut(s) 206, 227, 488, 1040, 1203, 1388, 1503
HpySE526I ACGT 3 cut(s) 359, 821, 881
Hsp92II CATG 8 cut(s) 72, 485, 713, 967, 1058, 1223, 1364, 1452
HspAI GCGC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 1209
Ksp22I TGATCA 2 cut(s) 478, 706
Kzo9I GATC 3 cut(s) 478, 706, 1231
LmnI GCTCC 5 cut(s) 279, 769, 811, 1212, 1392
Lsp1109I GCAGC 1 cut(s) 1351
MaeI CTAG 5 cut(s) 117, 1008, 1113, 1272, 1475
MaeII ACGT 3 cut(s) 359, 821, 881
MaeIII GTNAC 5 cut(s) 594, 712, 884, 1194, 1237
MalI GATC 3 cut(s) 480, 708, 1233
MbiI CCGCTC 1 cut(s) 138
MboI GATC 3 cut(s) 478, 706, 1231
MhlI GDGCHC 1 cut(s) 1209
MluCI AATT 8 cut(s) 23, 73, 397, 450, 511, 861, 935, 1248
MlyI GAGTC 2 cut(s) 324, 1078
MmeI TCCRAC 1 cut(s) 1052
MroI TCCGGA 1 cut(s) 1209
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 4 cut(s) 675, 759, 1095, 1482
MslI CAYNNNNRTG 1 cut(s) 528
MspCI CTTAAG 2 cut(s) 674, 758
MspI CCGG 3 cut(s) 199, 237, 1210
MvnI CGCG 3 cut(s) 167, 382, 735
MwoI GCNNNNNNNGC 3 cut(s) 455, 1145, 1154
NcoI CCATGG 1 cut(s) 68
NdeI CATATG 2 cut(s) 576, 634
NdeII GATC 3 cut(s) 478, 706, 1231
NlaIII CATG 8 cut(s) 72, 485, 713, 967, 1058, 1223, 1364, 1452
NlaIV GGNNCC 1 cut(s) 813
NruI TCGCGA 1 cut(s) 382
NspI RCATGY 1 cut(s) 1223
PaeR7I CTCGAG 1 cut(s) 970
PagI TCATGA 1 cut(s) 481
PciI ACATGT 1 cut(s) 1219
PcsI WCGNNNNNNNCGW 2 cut(s) 313, 460
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 7 cut(s) 7, 340, 367, 571, 686, 1439, 1486
PinAI ACCGGT 1 cut(s) 198
PkrI GCNGC 3 cut(s) 137, 225, 1366
PleI GAGTC 2 cut(s) 324, 1077
PpsI GAGTC 2 cut(s) 324, 1077
Ppu21I YACGTR 1 cut(s) 360
PscI ACATGT 1 cut(s) 1219
PsiI TTATAA 3 cut(s) 413, 720, 896
Psp124BI GAGCTC 1 cut(s) 1209
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 1395
RruI TCGCGA 1 cut(s) 382
RsaI GTAC 2 cut(s) 1426, 1500
RsaNI GTAC 2 cut(s) 1425, 1499
RseI CAYNNNNRTG 1 cut(s) 528
SacI GAGCTC 1 cut(s) 1209
SaqAI TTAA 4 cut(s) 675, 759, 1095, 1482
SatI GCNGC 3 cut(s) 136, 224, 1365
Sau3AI GATC 3 cut(s) 478, 706, 1231
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 2 cut(s) 324, 1078
SduI GDGCHC 1 cut(s) 1209
SfcI CTRYAG 1 cut(s) 1242
Sfr274I CTCGAG 1 cut(s) 970
SlaI CTCGAG 1 cut(s) 970
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 7 cut(s) 82, 325, 371, 674, 758, 970, 1261
SmoI CTYRAG 7 cut(s) 82, 325, 371, 674, 758, 970, 1261
SpeI ACTAGT 1 cut(s) 1474
Sse9I AATT 8 cut(s) 23, 73, 397, 450, 511, 861, 935, 1248
SsiI CCGC 3 cut(s) 133, 136, 223
SspMI CTAG 5 cut(s) 117, 1008, 1113, 1272, 1475
SstI GAGCTC 1 cut(s) 1209
StyI CCWWGG 2 cut(s) 68, 1121
TaaI ACNGT 2 cut(s) 1243, 1498
TaiI ACGT 3 cut(s) 362, 824, 884
TaqI TCGA 7 cut(s) 110, 437, 454, 794, 971, 1278, 1442
TasI AATT 8 cut(s) 23, 73, 397, 450, 511, 861, 935, 1248
TauI GCSGC 2 cut(s) 138, 226
TfiI GAWTC 7 cut(s) 7, 340, 367, 571, 686, 1439, 1486
Tru1I TTAA 4 cut(s) 675, 759, 1095, 1482
Tru9I TTAA 4 cut(s) 675, 759, 1095, 1482
TscAI CASTG 1 cut(s) 1291
TseI GCWGC 1 cut(s) 1364
TspDTI ATGAA 4 cut(s) 201, 593, 1349, 1355
TspGWI ACGGA 4 cut(s) 305, 483, 620, 1449
TspRI CASTG 1 cut(s) 1291
Vha464I CTTAAG 2 cut(s) 674, 758
XapI RAATTY 1 cut(s) 73
XbaI TCTAGA 1 cut(s) 1007
XceI RCATGY 1 cut(s) 1223
XhoI CTCGAG 1 cut(s) 970
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 5 cut(s) 117, 1008, 1113, 1272, 1475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.