Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14190 |
| fragaria_vesca | FvH4_4g12861 FvH4_4g12861 |
| malus_domestica | MD04G1021700.v1.1 |
| prunus_persica | Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1 |
| pyrus_communis | pycom04g01780 pycom07g00080 |
| rosa_chinensis | RchiOBHm_Chr4g0412521 |
| rosa_laevigata | RLG00000008282 RLG00000008292 |
| rosa_multiflora | Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740 |
| rosa_rugosa | Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200 |
| rosa_samantha | Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200 |
| rosa_wichuraiana | Rw4G014570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 179, 292 |
| AciI | CCGC | 1 cut(s) | 253 |
| AclWI | GGATC | 2 cut(s) | 35, 413 |
| AcsI | RAATTY | 2 cut(s) | 20, 318 |
| AcuI | CTGAAG | 1 cut(s) | 516 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 179, 292 |
| AgsI | TTSAA | 3 cut(s) | 67, 491, 550 |
| AluBI | AGCT | 1 cut(s) | 404 |
| AluI | AGCT | 1 cut(s) | 404 |
| Alw26I | GTCTC | 1 cut(s) | 215 |
| AlwI | GGATC | 2 cut(s) | 35, 413 |
| Ama87I | CYCGRG | 1 cut(s) | 70 |
| ApeKI | GCWGC | 2 cut(s) | 401, 473 |
| ApoI | RAATTY | 2 cut(s) | 20, 318 |
| AspS9I | GGNCC | 1 cut(s) | 580 |
| AsuHPI | GGTGA | 2 cut(s) | 162, 241 |
| AvaI | CYCGRG | 1 cut(s) | 70 |
| AvaII | GGWCC | 1 cut(s) | 580 |
| BanII | GRGCYC | 1 cut(s) | 300 |
| BbsI | GAAGAC | 1 cut(s) | 96 |
| BbvI | GCAGC | 2 cut(s) | 413, 485 |
| BccI | CCATC | 2 cut(s) | 34, 344 |
| BcoDI | GTCTC | 1 cut(s) | 215 |
| BglII | AGATCT | 1 cut(s) | 529 |
| BisI | GCNGC | 2 cut(s) | 402, 474 |
| BlsI | GCNGC | 2 cut(s) | 403, 475 |
| Bme18I | GGWCC | 1 cut(s) | 580 |
| BmeT110I | CYCGRG | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 580 |
| BmiI | GGNNCC | 2 cut(s) | 297, 581 |
| BmsI | GCATC | 3 cut(s) | 319, 358, 369 |
| BpiI | GAAGAC | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 1 cut(s) | 286 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 179, 292 |
| BseDI | CCNNGG | 1 cut(s) | 286 |
| BseGI | GGATG | 1 cut(s) | 384 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 179, 292 |
| BseMII | CTCAG | 2 cut(s) | 248, 583 |
| BseRI | GAGGAG | 1 cut(s) | 472 |
| BseXI | GCAGC | 2 cut(s) | 413, 485 |
| BsiHKCI | CYCGRG | 1 cut(s) | 70 |
| BslFI | GGGAC | 1 cut(s) | 593 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 179, 292 |
| BsmAI | GTCTC | 1 cut(s) | 215 |
| BsmBI | CGTCTC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 1 cut(s) | 593 |
| BsoBI | CYCGRG | 1 cut(s) | 70 |
| Bsp1286I | GDGCHC | 1 cut(s) | 300 |
| Bsp143I | GATC | 5 cut(s) | 27, 163, 190, 418, 529 |
| Bsp19I | CCATGG | 1 cut(s) | 286 |
| BspACI | CCGC | 1 cut(s) | 253 |
| BspCNI | CTCAG | 2 cut(s) | 249, 582 |
| BspLI | GGNNCC | 2 cut(s) | 297, 581 |
| BspPI | GGATC | 2 cut(s) | 35, 413 |
| BssECI | CCNNGG | 1 cut(s) | 286 |
| BssMI | GATC | 5 cut(s) | 27, 163, 190, 418, 529 |
| BssT1I | CCWWGG | 1 cut(s) | 286 |
| Bst4CI | ACNGT | 2 cut(s) | 313, 467 |
| Bst6I | CTCTTC | 1 cut(s) | 52 |
| BstDEI | CTNAG | 3 cut(s) | 239, 257, 569 |
| BstDSI | CCRYGG | 1 cut(s) | 286 |
| BstF5I | GGATG | 1 cut(s) | 384 |
| BstKTI | GATC | 5 cut(s) | 30, 166, 193, 421, 532 |
| BstMAI | GTCTC | 1 cut(s) | 215 |
| BstMBI | GATC | 5 cut(s) | 27, 163, 190, 418, 529 |
| BstV1I | GCAGC | 2 cut(s) | 413, 485 |
| BstV2I | GAAGAC | 1 cut(s) | 96 |
| BstX2I | RGATCY | 2 cut(s) | 27, 529 |
| BstYI | RGATCY | 2 cut(s) | 27, 529 |
| BtgI | CCRYGG | 1 cut(s) | 286 |
| BtsCI | GGATG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 4 cut(s) | 309, 414, 549, 566 |
| Cfr13I | GGNCC | 1 cut(s) | 580 |
| CseI | GACGC | 1 cut(s) | 197 |
| CviAII | CATG | 4 cut(s) | 221, 287, 372, 516 |
| CviJI | RGCY | 3 cut(s) | 298, 345, 404 |
| CviKI_1 | RGCY | 3 cut(s) | 298, 345, 404 |
| DdeI | CTNAG | 3 cut(s) | 239, 257, 569 |
| DpnI | GATC | 5 cut(s) | 29, 165, 192, 420, 531 |
| DpnII | GATC | 5 cut(s) | 27, 163, 190, 418, 529 |
| DraI | TTTAAA | 1 cut(s) | 84 |
| Eam1104I | CTCTTC | 1 cut(s) | 52 |
| EarI | CTCTTC | 1 cut(s) | 52 |
| Eco130I | CCWWGG | 1 cut(s) | 286 |
| Eco24I | GRGCYC | 1 cut(s) | 300 |
| Eco47I | GGWCC | 1 cut(s) | 580 |
| Eco57I | CTGAAG | 1 cut(s) | 516 |
| Eco88I | CYCGRG | 1 cut(s) | 70 |
| EcoRI | GAATTC | 1 cut(s) | 318 |
| EcoT14I | CCWWGG | 1 cut(s) | 286 |
| EcoT22I | ATGCAT | 1 cut(s) | 373 |
| EcoT38I | GRGCYC | 1 cut(s) | 300 |
| ErhI | CCWWGG | 1 cut(s) | 286 |
| Esp3I | CGTCTC | 1 cut(s) | 215 |
| FaeI | CATG | 4 cut(s) | 224, 290, 375, 519 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 77, 109 |
| FaqI | GGGAC | 1 cut(s) | 593 |
| FatI | CATG | 4 cut(s) | 220, 286, 371, 515 |
| FauI | CCCGC | 1 cut(s) | 260 |
| Fnu4HI | GCNGC | 2 cut(s) | 402, 474 |
| FokI | GGATG | 1 cut(s) | 391 |
| FriOI | GRGCYC | 1 cut(s) | 300 |
| Fsp4HI | GCNGC | 2 cut(s) | 402, 474 |
| GluI | GCNGC | 2 cut(s) | 402, 474 |
| HgaI | GACGC | 1 cut(s) | 197 |
| Hin1II | CATG | 4 cut(s) | 224, 290, 375, 519 |
| HinfI | GANTC | 2 cut(s) | 235, 539 |
| HphI | GGTGA | 2 cut(s) | 162, 241 |
| Hpy188I | TCNGA | 1 cut(s) | 186 |
| Hpy188III | TCNNGA | 4 cut(s) | 72, 141, 488, 594 |
| HpyCH4III | ACNGT | 2 cut(s) | 313, 467 |
| HpyCH4V | TGCA | 5 cut(s) | 17, 110, 332, 371, 382 |
| HpyF3I | CTNAG | 3 cut(s) | 239, 257, 569 |
| Hsp92II | CATG | 4 cut(s) | 224, 290, 375, 519 |
| Kzo9I | GATC | 5 cut(s) | 27, 163, 190, 418, 529 |
| LmnI | GCTCC | 1 cut(s) | 295 |
| LpnPI | CCDG | 5 cut(s) | 154, 210, 269, 368, 507 |
| Lsp1109I | GCAGC | 2 cut(s) | 413, 485 |
| LweI | GCATC | 3 cut(s) | 319, 358, 369 |
| MaeIII | GTNAC | 1 cut(s) | 563 |
| MalI | GATC | 5 cut(s) | 29, 165, 192, 420, 531 |
| MboI | GATC | 5 cut(s) | 27, 163, 190, 418, 529 |
| MboII | GAAGA | 3 cut(s) | 49, 69, 101 |
| MflI | RGATCY | 2 cut(s) | 27, 529 |
| MhlI | GDGCHC | 1 cut(s) | 300 |
| MluCI | AATT | 4 cut(s) | 20, 78, 261, 318 |
| MlyI | GAGTC | 1 cut(s) | 244 |
| MmeI | TCCRAC | 1 cut(s) | 295 |
| MnlI | CCTC | 6 cut(s) | 369, 432, 467, 493, 570, 578 |
| Mph1103I | ATGCAT | 1 cut(s) | 373 |
| MseI | TTAA | 2 cut(s) | 83, 99 |
| MspA1I | CMGCKG | 1 cut(s) | 404 |
| NcoI | CCATGG | 1 cut(s) | 286 |
| NdeII | GATC | 5 cut(s) | 27, 163, 190, 418, 529 |
| NlaIII | CATG | 4 cut(s) | 224, 290, 375, 519 |
| NlaIV | GGNNCC | 2 cut(s) | 297, 581 |
| NsiI | ATGCAT | 1 cut(s) | 373 |
| PaeR7I | CTCGAG | 1 cut(s) | 70 |
| PfeI | GAWTC | 1 cut(s) | 539 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 179, 292 |
| PkrI | GCNGC | 2 cut(s) | 403, 475 |
| PleI | GAGTC | 1 cut(s) | 243 |
| PpsI | GAGTC | 1 cut(s) | 243 |
| PspN4I | GGNNCC | 2 cut(s) | 297, 581 |
| PspPI | GGNCC | 1 cut(s) | 580 |
| PsuI | RGATCY | 2 cut(s) | 27, 529 |
| PvuII | CAGCTG | 1 cut(s) | 404 |
| SaqAI | TTAA | 2 cut(s) | 83, 99 |
| SatI | GCNGC | 2 cut(s) | 402, 474 |
| Sau3AI | GATC | 5 cut(s) | 27, 163, 190, 418, 529 |
| Sau96I | GGNCC | 1 cut(s) | 580 |
| SchI | GAGTC | 1 cut(s) | 244 |
| SduI | GDGCHC | 1 cut(s) | 300 |
| SetI | ASST | 3 cut(s) | 406, 496, 570 |
| SfaNI | GCATC | 3 cut(s) | 319, 358, 369 |
| Sfr274I | CTCGAG | 1 cut(s) | 70 |
| SinI | GGWCC | 1 cut(s) | 580 |
| SlaI | CTCGAG | 1 cut(s) | 70 |
| SmlI | CTYRAG | 1 cut(s) | 70 |
| SmoI | CTYRAG | 1 cut(s) | 70 |
| Sse9I | AATT | 4 cut(s) | 20, 78, 261, 318 |
| SsiI | CCGC | 1 cut(s) | 253 |
| StyI | CCWWGG | 1 cut(s) | 286 |
| TaaI | ACNGT | 2 cut(s) | 313, 467 |
| TaqI | TCGA | 1 cut(s) | 71 |
| TasI | AATT | 4 cut(s) | 20, 78, 261, 318 |
| TfiI | GAWTC | 1 cut(s) | 539 |
| Tru1I | TTAA | 2 cut(s) | 83, 99 |
| Tru9I | TTAA | 2 cut(s) | 83, 99 |
| TscAI | CASTG | 4 cut(s) | 316, 421, 549, 566 |
| TseI | GCWGC | 2 cut(s) | 401, 473 |
| TspDTI | ATGAA | 1 cut(s) | 425 |
| TspRI | CASTG | 4 cut(s) | 316, 421, 549, 566 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 179, 292 |
| VpaK11BI | GGWCC | 1 cut(s) | 580 |
| XapI | RAATTY | 2 cut(s) | 20, 318 |
| XhoI | CTCGAG | 1 cut(s) | 70 |
| Zsp2I | ATGCAT | 1 cut(s) | 373 |